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List of works by Manolo Gouy

A mixture model and a hidden markov model to simultaneously detect recombination breakpoints and reconstruct phylogenies.

scientific article published on 25 June 2009

A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history

scientific article

Accounting for horizontal gene transfers explains conflicting hypotheses regarding the position of aquificales in the phylogeny of Bacteria

scientific article

Adaptation to environmental temperature is a major determinant of molecular evolutionary rates in archaea

scientific article published on 15 April 2011

Automatic RNA secondary structure prediction with a comparative approach

scientific article published on 01 July 2002

Automatic identification of large collections of protein-coding or rRNA sequences

scientific article published on 2 September 2007

Bio++: efficient extensible libraries and tools for computational molecular evolution.

scientific article

Clinical and environmental isolates of Legionella pneumophila serogroup 1 cannot be distinguished by sequence analysis of two surface protein genes and three housekeeping genes.

scientific article

Databases of homologous gene families for comparative genomics

scientific article

Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests

scientific article

Efficient likelihood computations with nonreversible models of evolution

scientific article published in October 2006

Evolutionary biology: ancient bacteria liked it hot.

scientific article

Extreme halophilic archaea derive from two distinct methanogen Class II lineages.

scientific article published on 20 April 2018

Functional and evolutionary analysis of a eukaryotic parasitic genome

scientific article

Gene Acquisitions from Bacteria at the Origins of Major Archaeal Clades Are Vastly Overestimated

scientific article published on 4 November 2015

Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi

scientific article

Genome-scale coestimation of species and gene trees.

scientific article published on 6 November 2012

HoSeqI: automated homologous sequence identification in gene family databases

scientific article

Horizontal transfer of two operons coding for hydrogenases between bacteria and archaea

scientific article published on 01 May 2005

In Retrospect: Lamarck's treatise at 200

scientific article published in Nature

In silico whole-genome scanning of cancer-associated nonsynonymous SNPs and molecular characterization of a dynein light chain tumour variant.

scientific article

Integrated databanks access and sequence/structure analysis services at the PBIL.

scientific article

Invertebrate data predict an early emergence of vertebrate fibrillar collagen clades and an anti-incest model

scientific article

Lateral gene transfer as a support for the tree of life

scientific article

Molecular phylogeny of Myricaceae: a reexamination of host-symbiont specificity

scientific article

Origin and molecular evolution of receptor tyrosine kinases with immunoglobulin-like domains

scientific article published on 21 March 2006

Origins of major archaeal clades do not correspond to gene acquisitions from bacteria

article

Parallel adaptations to high temperatures in the Archaean eon.

scientific article

Phylogenetic analysis of the complete genome sequence of Encephalitozoon cuniculi supports the fungal origin of microsporidia and reveals a high frequency of fast-evolving genes

scientific article published in December 2004

Phylogenetic study and identification of Vibrio splendidus-related strains based on gyrB gene sequences

scientific article published in March 2004

Phylogenomic test of the hypotheses for the evolutionary origin of eukaryotes

scientific article published on 07 January 2014

Phylogenomics of life-or-death switches in multicellular animals: Bcl-2, BH3-Only, and BNip families of apoptotic regulators

scientific article published on 10 August 2005

Polymorphism of the Staphylococcus aureus Panton-Valentine leukocidin genes and its possible link with the fitness of community-associated methicillin-resistant S. aureus.

scientific article published in September 2008

Recombination rate and the distribution of transposable elements in the Drosophila melanogaster genome

scientific article published in March 2002

Remote access to ACNUC nucleotide and protein sequence databases at PBIL.

scientific article

RiboDB Database: A Comprehensive Resource for Prokaryotic Systematics.

scientific article published on 5 May 2016

Seaview Version 5: A Multiplatform Software for Multiple Sequence Alignment, Molecular Phylogenetic Analyses, and Tree Reconciliation

scientific article published on 01 January 2021

Sequence of the Small Subunit Ribosomal RNA Gene of Perkinsus atlanticus-like Isolated from Carpet Shell Clam in Galicia, Spain.

scientific article published in September 2000

The molecular signal for the adaptation to cold temperature during early life on Earth

scientific article (publication date: 23 October 2013)

Toward more accurate ancestral protein genotype-phenotype reconstructions with the use of species tree-aware gene trees

scientific article

Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases

scientific article

Treerecs: an integrated phylogenetic tool, from sequences to reconciliations

scientific article published on 16 July 2020

leBIBIQBPP: a set of databases and a webtool for automatic phylogenetic analysis of prokaryotic sequences

scientific article published on 12 August 2015

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