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Authors whose works are in public domain in at least one jurisdiction

List of works by Geoffrey J. Barton

14-3-3-Pred: improved methods to predict 14-3-3-binding phosphopeptides

scientific article

3Dee: a database of protein structural domains

scientific article (publication date: February 2001)

A Dictyostelium SH2 adaptor protein required for correct DIF-1 signaling and pattern formation

scientific article published on 21 March 2011

A comparison of SCOP and CATH with respect to domain-domain interactions

scientific article published on 01 January 2008

A new family of transcription factors

scientific article

A normalised scale for structural genomics target ranking: the OB-Score

scientific article published on 16 June 2006

A role for Snf2-related nucleosome-spacing enzymes in genome-wide nucleosome organization

scientific article published on September 2011

A structural analysis of phosphate and sulphate binding sites in proteins. Estimation of propensities for binding and conservation of phosphate binding sites

scientific article published on September 1994

A study of the structural properties of sites modified by the O-linked 6-N-acetylglucosamine transferase

A unified analysis of evolutionary and population constraint in protein domains highlights structural features and pathogenic sites

scientific article published in 2024

AlmostSignificant: Simplifying quality control of high-throughput sequencing data

scholarly article published 16 May 2016

Amino acid sequence analysis of the annexin super-gene family of proteins

scientific article published on June 1991

An SH2-SH3 domain hybrid.

scientific article

An efficient algorithm to locate all locally optimal alignments between two sequences allowing for gaps.

scientific article published in December 1993

Analysis of human small nucleolar RNAs (snoRNA) and the development of snoRNA modulator of gene expression vectors

scientific article

Ankyrin repeats in context with human population variation

scientific article published on 24 August 2021

Biological Units and their Effect upon the Properties and Prediction of Protein–Protein Interactions

scientific article published on 22 September 2006

Characterization and prediction of protein nucleolar localization sequences.

scientific article published on 26 July 2010

Chromosome evolution and the genetic basis of agronomically important traits in greater yam

scientific article published on 14 April 2022

Classification and functional annotation of eukaryotic protein kinases

scientific article

Classification of likely functional class for ligand binding sites identified from fragment screening

scientific article published in 2024

Computational approaches to selecting and optimising targets for structural biology

scientific article

Computer speed and sequence comparison

scientific article published in Science

Conservation analysis and structure prediction of the SH2 family of phosphotyrosine binding domains

scientific article (publication date: 8 June 1992)

Conservation analysis and structure prediction of the protein serine/threonine phosphatases. Sequence similarity with diadenosine tetraphosphatase from Escherichia coli suggests homology to the protein phosphatases

scientific article

Conservation of amino acids in multiple alignments: aspartic acid has unexpected conservation

article

Continuous and discontinuous domains: an algorithm for the automatic generation of reliable protein domain definitions

scientific article

Creation and analysis of protein multiple sequence alignments

scientific article published on 01 January 2001

Deposition of Macromolecular Structures

scientific article published on 01 November 1998

Detection and Mitigation of Spurious Antisense RNA-seq Reads with RoSA

scholarly article published 26 September 2018

Direct sequencing of Arabidopsis thaliana RNA reveals patterns of cleavage and polyadenylation.

scientific article published on 22 July 2012

Distinct donor and acceptor specificities of Trypanosoma brucei oligosaccharyltransferases

scientific article published on 23 July 2009

Draft genome of the filarial nematode parasite Brugia malayi

scientific article

Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis

scientific article

E-MSD: an integrated data resource for bioinformatics.

scientific article

Elevated O-GlcNAc levels activate epigenetically repressed genes and delay mouse ESC differentiation without affecting naïve to primed cell transition.

scientific article published on October 2014

Emerging roles of pseudokinases

scientific article

Estimation of P-values for global alignments of protein sequences

scientific article published in December 2001

Evaluation and improvement of multiple sequence methods for protein secondary structure prediction.

scientific article

Evaluation and improvements in the automatic alignment of protein sequences

scientific article published in February 1987

Expression, purification, crystallization, data collection and preliminary biochemical characterization of methicillin-resistant Staphylococcus aureus Sar2028, an aspartate/tyrosine/phenylalanine pyridoxal-5'-phosphate-dependent aminotransferase

scientific article

Filaggrin-stratified transcriptomic analysis of pediatric skin identifies mechanistic pathways in patients with atopic dermatitis

scientific article

Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs

scientific article

Flexible protein sequence patterns

scientific article published on 01 March 1990

GOtcha: a new method for prediction of protein function assessed by the annotation of seven genomes

scientific article

Genome analysis of the unicellular green alga Chlamydomonas reinhardtii Indicates an ancient evolutionary origin for key pattern recognition and cell-signaling protein families

scientific article published on May 2008

Global network analysis of drug tolerance, mode of action and virulence in methicillin-resistant S. aureus

scientific article

Haploinsufficiency for AAGAB causes clinically heterogeneous forms of punctate palmoplantar keratoderma.

scientific article published on 14 October 2012

High-resolution whole-genome sequencing reveals that specific chromatin domains from most human chromosomes associate with nucleoli

scientific article

How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use?

scientific article

How well do RNA-Seq differential gene expression tools perform in a complex eukaryote? A case study in Arabidopsis thaliana

article

How well do RNA-Seq differential gene expression tools perform in a eukaryote with a complex transcriptome?

article

Human Missense Variation is Constrained by Domain Structure and Highlights Functional and Pathogenic Residues

scholarly article published 12 April 2017

Human box C/D snoRNA processing conservation across multiple cell types

scientific article published on 22 December 2011

Human miRNA precursors with box H/ACA snoRNA features

scientific article

Human platelet-derived endothelial cell growth factor is homologous to Escherichia coli thymidine phosphorylase

scientific article published on May 1992

Identification of a glycosylphosphatidylinositol anchor-modifying beta1-3 N-acetylglucosaminyl transferase in Trypanosoma brucei

scientific article

Identification of human miRNA precursors that resemble box C/D snoRNAs

scientific article

Identification of multiple distinct Snf2 subfamilies with conserved structural motifs.

scientific article published on 31 May 2006

Identifying differential isoform abundance with RATs: a universal tool and a warning

Improved annotation of 3' untranslated regions and complex loci by combination of strand-specific direct RNA sequencing, RNA-Seq and ESTs.

scientific article

Increased coverage obtained by combination of methods for protein sequence database searching

scientific article

JABAWS 2.2 Distributed Web Services for Bioinformatics: Protein Disorder, Conservation and RNA Secondary Structure

scientific article published on 30 January 2018

JPred4: a protein secondary structure prediction server

scientific article

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

scientific article

Java bioinformatics analysis web services for multiple sequence alignment--JABAWS:MSA

scientific article (publication date: 15 July 2011)

Kinomer v. 1.0: a database of systematically classified eukaryotic protein kinases

scientific article

Live imaging of nascent RNA dynamics reveals distinct types of transcriptional pulse regulation

scientific article

MACSIMS: multiple alignment of complete sequences information management system

scientific article published on 23 June 2006

Major transcriptome re-organisation and abrupt changes in signalling, cell cycle and chromatin regulation at neural differentiation in vivo

scientific article

Mast cell tryptases: examination of unusual characteristics by multiple sequence alignment and molecular modeling

scientific article published on March 1992

Missense variants in ACE2 are predicted to encourage and inhibit interaction with SARS-CoV-2 Spike and contribute to genetic risk in COVID-19

scientific article published on 05 May 2020

Missense variants in human ACE2 strongly affect binding to SARS-CoV-2 Spike providing a mechanism for ACE2 mediated genetic risk in Covid-19: A case study in affinity predictions of interface variants

scientific article published on 02 March 2022

Multiple protein sequence alignment from tertiary structure comparison: assignment of global and residue confidence levels

scientific article (publication date: October 1992)

Mutational analysis of human papillomavirus E4 proteins: identification of structural features important in the formation of cytoplasmic E4/cytokeratin networks in epithelial cells ⬇️

scientific article published on October 1, 1994

Nanopore direct RNA sequencing maps the complexity of Arabidopsis mRNA processing and mA modification

scientific article published on 14 January 2020

NoD: a Nucleolar localization sequence detector for eukaryotic and viral proteins

scientific article

OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy

scientific article

PGE(2) induces macrophage IL-10 production and a regulatory-like phenotype via a protein kinase A-SIK-CRTC3 pathway.

scientific article published on 14 December 2012

PIMS sequencing extension: a laboratory information management system for DNA sequencing facilities

scientific article

PIPs: human protein-protein interaction prediction database

scientific article

PNAC: a protein nucleolar association classifier.

scientific article

PTEN protein phosphatase activity correlates with control of gene expression and invasion, a tumor-suppressing phenotype, but not with AKT activity

scientific article

ParCrys: a Parzen window density estimation approach to protein crystallization propensity prediction

scientific article

Prediction of antigenic determinants and secondary structures of the major AIDS virus proteins.

scientific article

Prediction of domain organisation and secondary structure of thyroid peroxidase, a human autoantigen involved in destructive thyroiditis

scientific article published on 01 June 1990

Probabilistic prediction and ranking of human protein-protein interactions

scientific article published on 5 July 2007

ProtEST: protein multiple sequence alignments from expressed sequence tags

scientific article published in February 2000

Protein fold recognition by mapping predicted secondary structures.

scientific article

Protein secondary structure prediction ⬇️

scientific article published on 01 June 1995

Protein sequence alignment techniques

scientific article published in November 1998

Protein sequence alignments: a strategy for the hierarchical analysis of residue conservation

scientific article published in December 1993

Protein structural domains: Analysis of the 3Dee domains database

article

Protein structure prediction

scientific article published in Nature

Proteotoxic stress reprograms the chromatin landscape of SUMO modification.

scientific article published on 7 July 2015

Proteus: an R package for downstream analysis of MaxQuant output

article

Purification, crystallization and data collection of methicillin-resistant Staphylococcus aureus Sar2676, a pantothenate synthetase

scientific article

Quantification of the variation in percentage identity for protein sequence alignments.

scientific article published on 19 September 2006

Quantitative proteomics in resected renal cancer tissue for biomarker discovery and profiling.

scientific article published on 18 February 2014

Re: Letter to the Editor Regarding Deposition of 3D Structural Studies of Biological Macromolecules

scientific article published on 01 April 1998

Regulation of the miR-212/132 locus by MSK1 and CREB in response to neurotrophins

scientific article

Relative Abundance of Transcripts ( ): Identifying differential isoform abundance from RNA-seq

scientific article published on 24 February 2019

SCANPS: a web server for iterative protein sequence database searching by dynamic programing, with display in a hierarchical SCOP browser

scientific article published on 24 May 2008

SNAPPI-DB: a database and API of Structures, iNterfaces and Alignments for Protein-Protein Interactions.

scientific article published in January 2007

Scanning protein sequence databanks using a distributed processing workstation network.

scientific article

Secondary structure prediction for modelling by homology

scientific article published in April 1993

Secondary structure prediction from multiple sequence data: blood clotting factor XIII and Yersinia protein-tyrosine phosphatase.

scientific article

Sequence alignment for molecular replacement

scientific article published on 05 December 2007

Statistical models for RNA-seq data derived from a two-condition 48-replicate experiment

scientific article published on 23 July 2015

Structural features can be unconserved in proteins with similar folds. An analysis of side-chain to side-chain contacts secondary structure and accessibility.

scientific article

Structural similarity between the p17 matrix protein of HIV-1 and interferon-γ

scientific article published in Nature

System-wide changes to SUMO modifications in response to heat shock

scientific article

TarO: a target optimisation system for structural biology

scientific article

The AMPS package for multiple protein sequence alignment

scientific article published in January 1994

The Dundee Resource for Sequence Analysis and Structure Prediction

scientific article published on 28 November 2019

The Jalview Java alignment editor

scientific article (publication date: 12 February 2004)

The RNA-binding protein FPA regulates flg22-triggered defense responses and transcription factor activity by alternative polyadenylation

scientific article

The SWI/SNF complex acts to constrain distribution of the centromeric histone variant Cse4.

scientific article published on 19 April 2011

The Scottish Structural Proteomics Facility: targets, methods and outputs

scientific article

The complement of protein kinases of the microsporidium Encephalitozoon cuniculi in relation to those of Saccharomyces cerevisiae and Schizosaccharomyces pombe

scientific article

The contrasting properties of conservation and correlated phylogeny in protein functional residue prediction

scientific article

The kinomes of apicomplexan parasites

scientific article published on 26 April 2012

The limits of protein secondary structure prediction accuracy from multiple sequence alignment.

scientific article

The structure of serine palmitoyltransferase; gateway to sphingolipid biosynthesis

scientific article

Tmem79/Matt is the matted mouse gene and is a predisposing gene for atopic dermatitis in human subjects

scientific journal article

Transcription termination and chimeric RNA formation controlled by Arabidopsis thaliana FPA.

scientific article

Visual representation of database search results: the RHIMS Plot.

scientific article published in May 2003

Visualization of multiple alignments, phylogenies and gene family evolution

scientific article published on March 2010

Widespread premature transcription termination of Arabidopsis thaliana NLR genes by the spen protein FPA

scientific article published on 27 April 2021

XANNpred: neural nets that predict the propensity of a protein to yield diffraction-quality crystals

scientific article

[25] Protein multiple sequence alignment and flexible pattern matching

scientific article published on 01 January 1990

[29] Identification of functional residues and secondary structure from protein multiple sequence alignment

scientific article published on 01 January 1996

scop: structural classification of proteins

scientific article published on 01 December 1994

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