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List of works by Paul A Haynes

A Combination of Immobilised pH Gradients Improves Membrane Proteomics

scientific article published on 07 October 2008

A Simplified Gradient Solvent Delivery System for Capillary Liquid Chromatography–Electrospray Ionization Mass Spectrometry

scientific article published on 01 December 1998

A fresh look at the male-specific region of the human Y chromosome

scientific article published on 20 December 2012

A proteomic analysis of the effects of metal contamination on Sydney Rock Oyster (Saccostrea glomerata) haemolymph.

scientific article published on 17 March 2011

A web site for the rat serum protein study group

scientific article published on 01 December 1999

Age-related neurodegenerative disease associated pathways identified in retinal and vitreous proteome from human glaucoma eyes.

scientific article published on 4 October 2017

Amino acid analysis using derivatisation with 9-fluorenylmethyl chloroformate and reversed-phase high-performance liquid chromatography

article

Amyloid β Induces Early Changes in the Ribosomal Machinery, Cytoskeletal Organization and Oxidative Phosphorylation in Retinal Photoreceptor Cells

scientific article published on 22 February 2019

Analysis of rice proteins using SDS-PAGE shotgun proteomics

scientific article published in January 2014

Analysis of secreted proteins from Aspergillus flavus.

scientific article published in August 2005

Analytical biotechnology: applications for downstream processing

scientific article published on 01 April 1991

Applications of automated amino acid analysis using 9-fluorenylmethyl chloroformate

article

Characterisation of oligosaccharides from a glycoprotein variant of human serum albumin (albumin Casebrook) using high-performance anion-exchange chromatography and nuclear magnetic resonance spectroscopy

scientific article published on 01 October 1992

Characterization of the Trypanosoma brucei homologue of a Trypanosoma cruzi flagellum-adhesion glycoprotein.

scientific article published in November 1996

Characterization of the rat liver membrane proteome using peptide immobilized pH gradient isoelectric focusing.

scientific article published on 23 January 2008

Comparative Protein Expression in Different Strains of the Bloom-forming Cyanobacterium Microcystis aeruginosa ⬇️

scientific article published on May 24, 2011

Comparative proteomic analysis of a sea urchin (Heliocidaris erythrogramma) antibacterial response revealed the involvement of apextrin and calreticulin ⬇️

scientific article published on September 25, 2010

Comprehensive proteomics in yeast using chromatographic fractionation, gas phase fractionation, protein gel electrophoresis, and isoelectric focusing.

scientific article published in May 2005

Conservation of the lipooligosaccharide synthesis locus lgt among strains of Neisseria gonorrhoeae: requirement for lgtE in synthesis of the 2C7 epitope and of the beta chain of strain 15253.

scientific article published on October 1996

Correction to "Statistics in Proteomics: A Meta-analysis of 100 Proteomics Papers Published in 2019"

scientific article published on 22 July 2020

Crystal structure of Lsm3 octamer from Saccharomyces cerevisiae: implications for Lsm ring organisation and recruitment

scientific article

Current perspectives in proteomic analysis of abiotic stress in Grapevines.

scientific article published on 8 December 2014

DDX3Y, a Male-Specific Region of Y Chromosome Gene, May Modulate Neuronal Differentiation

scientific article

Data from a proteomic baseline study of Assemblage A in Giardia duodenalis

scientific article

Data quality issues in proteomics - there are many paths to enlightenment

scientific article published on 01 September 2016

Degradation of white wine haze proteins by Aspergillopepsin I and II during juice flash pasteurization

scientific article published on 17 May 2012

Development of a system for the study of protein-protein interactions in planta: characterization of a TATA-box binding protein complex in Oryza sativa

scientific article published in September 2003

Differential glycosylation of epitope-tagged glycoprotein Gp72 during the Trypanosoma cruzi life cycle.

scientific article published in December 1996

Differential metabolic response of cultured rice (Oryza sativa) cells exposed to high- and low-temperature stress

scientific article

Differential protein expression and post-translational modifications in metronidazole-resistant Giardia duodenalis.

scientific article published in April 2018

Differential proteomic response of rice (Oryza sativa) leaves exposed to high- and low-temperature stress

scientific article

Differential regulation of aquaporins, small GTPases and V‐ATPases proteins in rice leaves subjected to drought stress and recovery ⬇️

scientific article published on March 1, 2012

Discovery of Novel Cell Surface Markers for Purification of Embryonic Dopamine Progenitors for Transplantation in Parkinson's Disease Animal Models

scientific article published on 29 May 2018

Effects of low temperature on tropical and temperate isolates of marine Synechococcus

scientific article published on 23 October 2015

Evidence for local adaptation to extreme heat across populations of a widespread tree from quantitative proteomics

scientific article published in 2018

Extended exposure to sugar and/or caffeine produces distinct behavioral and neurochemical profiles in the orbitofrontal cortex of rats: Implications for neural function.

scientific article published on 2 September 2016

Genome-Wide Expression Analysis of Root Tips in Contrasting Rice Genotypes Revealed Novel Candidate Genes for Water Stress Adaptation

scientific article published on 21 February 2022

Grape and wine proteins: their fractionation by hydrophobic interaction chromatography and identification by chromatographic and proteomic analysis.

scientific article published on 8 April 2009

High-throughput functional affinity purification of mannose binding proteins from Oryza sativa

scientific article published in July 2003

Identification of gel-separated proteins by liquid chromatography-electrospray tandem mass spectrometry: comparison of methods and their limitations.

scientific article

Identification of proteins from 4200-year-old skin and muscle tissue biopsies from ancient Egyptian mummies of the first intermediate period shows evidence of acute inflammation and severe immune response.

scientific article published on October 2016

Identification of proteins from a cell wall fraction of the diatom Thalassiosira pseudonana: insights into silica structure formation.

scientific article published on 5 October 2005

Induction of cachexia in mice by systemically administered myostatin.

scientific article

Induction of virulence factors in Giardia duodenalis independent of host attachment

scientific article published on 12 February 2016

Investigative proteomics: identification of an unknown plant virus from infected plants using mass spectrometry.

scientific article published in July 2003

Label-Free Quantitative Shotgun Proteomics Using Normalized Spectral Abundance Factors ⬇️

scientific article published on January 1, 2013

Label-free and isobaric tandem mass tag (TMT) multiplexed quantitative proteomic data of two contrasting rice cultivars exposed to drought stress and recovery

Less label, more free: approaches in label-free quantitative mass spectrometry.

scientific article published on 17 January 2011

Liver membrane proteome glycosylation changes in mice bearing an extra-hepatic tumor.

scientific article published on 18 February 2010

Low Focal Adhesion Signaling Promotes Ground State Pluripotency of Mouse Embryonic Stem Cells.

scientific article published on 29 August 2017

Manipulating root water supply elicits major shifts in the shoot proteome.

scientific article

Mass spectrometric analysis of the editosome and other multiprotein complexes in Trypanosoma brucei.

scientific article published in July 2003

Methamphetamine-induced sensitization is associated with alterations to the proteome of the prefrontal cortex: implications for the maintenance of psychotic disorders

scientific article published on 17 October 2014

Multiple testing corrections in quantitative proteomics: A useful but blunt tool

scientific article published on 27 July 2016

NF45 and NF90 regulate HS4-dependent interleukin-13 transcription in T cells

scientific article

PeptideWitch-A Software Package to Produce High-Stringency Proteomics Data Visualizations from Label-Free Shotgun Proteomics Data

scientific article published on 21 August 2020

Phosphoglycosylation: a new structural class of glycosylation?

scientific article published on January 1998

Physiological and molecular changes in Oryza meridionalis Ng., a heat-tolerant species of wild rice

scientific article published on January 2010

Plant Proteogenomics: From Protein Extraction to Improved Gene Predictions ⬇️

scientific article published on January 1, 2013

Plant Proteomics

article

Plant-Microbe Symbiosis: What Has Proteomics Taught Us?

scientific article published on 01 August 2019

PlantPReS: A database for plant proteome response to stress

scientific article published on 03 March 2016

PloGO: plotting gene ontology annotation and abundance in multi-condition proteomics experiments.

scientific article published on 18 January 2012

Post-translational modifications of the Dictyostelium discoideum glycoprotein PsA. Glycosylphosphatidylinositol membrane anchor and composition of O-linked oligosaccharides

article

Post-translational processing targets functionally diverse proteins in Mycoplasma hyopneumoniae.

scientific article

Promoting agriculture proteome research activities in the Asia and Oceania region

scientific article

Prospective Isolation of ISL1+ Cardiac Progenitors from Human ESCs for Myocardial Infarction Therapy.

scientific article published on 23 February 2018

Protein expression profiling of Coccidioides posadasii by two-dimensional differential in-gel electrophoresis and evaluation of a newly recognized peroxisomal matrix protein as a recombinant vaccine candidate.

scientific article

Protein identification and quantification from riverbank grape, Vitis riparia: Comparing SDS-PAGE and FASP-GPF techniques for shotgun proteomic analysis.

scientific article published on May 2015

Proteins of rat serum: I. Establishing a reference two-dimensional electrophoresis map by immunodetection and microbore high performance liquid chromatography-electrospray mass spectrometry.

scientific article

Proteins of rat serum: II. Influence of some biological parameters of the two-dimensional electrophoresis pattern.

scientific article published in June 1998

Proteins of rat serum: III. Gender-related differences in protein concentration under baseline conditions and upon experimental inflammation as evaluated by two-dimensional electrophoresis

scientific article published on 01 April 1999

Proteome Analysis of Ground State Pluripotency.

scientific article

Proteome analysis: biological assay or data archive?

scientific article

Proteomes of Leaf-Growing Zones in Rice Genotypes with Contrasting Drought Tolerance

scientific article published on 18 April 2019

Proteomic Analysis of Shade-Avoidance Response in Tomato Leaves

article

Proteomic Responses to Drought Vary Widely Among Eight Diverse Genotypes of Rice (Oryza sativa)

scientific article published on 06 January 2020

Proteomic analysis in Giardia duodenalis yields insights into strain virulence and antigenic variation.

scientific article published on November 2014

Proteomic analysis of Drosophila mojavensis male accessory glands suggests novel classes of seminal fluid proteins

scientific article published on 28 March 2009

Proteomic analysis of temperature stress in plants.

scientific article published on February 2010

Proteomic analysis of the dorsal and ventral hippocampus of rats maintained on a high fat and refined sugar diet.

scientific article published on 18 September 2013

Proteomic characterization of the Chlamydomonas reinhardtii chloroplast ribosome. Identification of proteins unique to th e70 S ribosome.

scientific article published on 24 June 2003

Proteomic characterization of wheat amyloplasts using identification of proteins by tandem mass spectrometry

scientific article published on 01 September 2002

Proteomic discovery of biomarkers of metal contamination in Sydney Rock oysters (Saccostrea glomerata).

scientific article published on 5 October 2011

Proteomic survey of metabolic pathways in rice

scientific article

Proteomics dataset from 26th Dynasty Egyptian mummified remains sampled using minimally invasive skin sampling tape strips

scientific article published in 2022

Proteomics of Important Food Crops in the Asia Oceania Region: Current Status and Future Perspectives

scientific article

Quantitative Proteomic Analysis of the Orbital Frontal Cortex in Rats Following Extended Exposure to Caffeine Reveals Extensive Changes to Protein Expression: Implications for Neurological Disease

scientific article

Quantitative proteomic analysis of Giardia duodenalis assemblage A: A baseline for host, assemblage, and isolate variation

scientific article published on 30 March 2015

Quantitative proteomic analysis of cabernet sauvignon grape cells exposed to thermal stresses reveals alterations in sugar and phenylpropanoid metabolism.

scientific article published on 09 May 2015

Quantitative proteomic analysis of cold-responsive proteins in rice

scientific article

Quantitative proteomic analysis of human testis reveals system-wide molecular and cellular pathways associated with non-obstructive azoospermia.

scientific article published on 14 February 2017

Quantitative proteomic analysis of two different rice varieties reveals that drought tolerance is correlated with reduced abundance of photosynthetic machinery and increased abundance of ClpD1 protease

scientific article published on 16 May 2016

Quantitative proteomics in Giardia duodenalis-Achievements and challenges.

scientific article published on 19 July 2016

Quantitative proteomics of heavy metal stress responses in Sydney rock oysters

scientific article published in March 2012

Quantitative shotgun proteomics reveals extensive changes to the proteome of the orbitofrontal cortex in rats that are hyperactive following withdrawal from a high sugar diet

scientific article published in December 2015

Realizing the potential of agricultural and environmental proteomics

scientific article published in November 2013

Recent Advances in Proteomics Applied to Elucidate the Role of Environmental Impacts on Human Health and Organismal Function

article

Relative quantification of phosphoproteomic changes in grapevine (Vitis vinifera L.) leaves in response to abscisic acid.

scientific article published on 22 June 2016

Roles of grape thaumatin-like protein and chitinase in white wine haze formation

scientific article

Shotgun label-free quantitative proteomics of water-deficit-stressed midmature peanut (Arachis hypogaea L.) seed

scientific article published on 14 October 2013

Shotgun proteomic analysis of long-distance drought signaling in rice roots.

scientific article

Shotgun proteomic analysis of photoperiod regulated dormancy induction in grapevine

scientific article published on 29 May 2018

Shotgun proteomic analysis of the Mexican lime tree infected with "CandidatusPhytoplasma aurantifolia".

scientific article published on 7 January 2013

Shotgun proteomic profiling of five species of New Zealand Pachycladon

article

Simultaneous Detection and Identification of O-GlcNAc-Modified Glycoproteins Using Liquid Chromatography−Tandem Mass Spectrometry

scientific article published on 01 November 2000

Smooth muscle cell phenotypic transition associated with calcification: upregulation of Cbfa1 and downregulation of smooth muscle lineage markers.

scientific article published in December 2001

Structural characterization of novel oligosaccharides of cell-surface glycoproteins of Trypanosoma cruzi

scientific article published on 01 December 1996

Subcellular localization of Trypanosoma cruzi glycoprotein Gp72.

scientific article published on December 1996

Surface markers of human embryonic stem cells: a meta analysis of membrane proteomics reports

scientific article published on 29 October 2018

TMT One-Stop Shop: From Reliable Sample Preparation to Computational Analysis Platform

2017 scientific article

The Art of validating quantitative proteomics data

scientific article published on 25 November 2018

The Hsp90 inhibitor SNX-7081 is synergistic with fludarabine nucleoside via DNA damage and repair mechanisms in human, p53-negative chronic lymphocytic leukemia

scientific article published on 6 November 2015

The Quest for Missing Proteins in Rice

scientific article published on 11 December 2018

The biology of environmental stress: molecular biomarkers in Sydney rock oysters (Saccostrea glomerata).

scientific article

The functional proteomics toolbox: methods and applications.

scientific article

The generation gap: Proteome changes and strain variation during encystation in Giardia duodenalis.

scientific article

The influence of signals from chilled roots on the proteome of shoot tissues in rice seedlings

scientific article published on 6 June 2013

The wildcat toolbox: a set of perl script utilities for use in peptide mass spectral database searching and proteomics experiments

scientific article published on April 2006

Time course proteomic profiling of cellular responses to immunological challenge in the sea urchin, Heliocidaris erythrogramma

article

Time to articulate a vision for the future of plant proteomics - A global perspective: An initiative for establishing the International Plant Proteomics Organization (INPPO).

scientific article

Towards an integrated analytical technology for the generation of multidimensional protein expression maps

scientific article published on August 1, 1998

Transcript and protein profiling identify candidate gene sets of potential adaptive significance in New Zealand Pachycladon

scientific article

Two Splice Variants of Y Chromosome-Located Lysine-Specific Demethylase 5D Have Distinct Function in Prostate Cancer Cell Line (DU-145).

scientific article published on 28 July 2015

Two-Dimensional Differential In-Gel Electrophoresis (DIGE) of Leaf and Roots of Lycopersicon esculentum

scientific article published on 01 January 2007

Two-Dimensional Nanoflow Liquid Chromatography-Tandem Mass Spectrometry of Proteins Extracted from Rice Leaves and Roots

scientific article published on 01 January 2007

Two-step purification of pathogenesis-related proteins from grape juice and crystallization of thaumatin-like proteins.

scientific article published in December 2009

Upregulation of Proteolytic Pathways and Altered Protein Biosynthesis Underlie Retinal Pathology in a Mouse Model of Alzheimer's Disease

scientific article published on 01 February 2019

Verification of single-peptide protein identifications by the application of complementary database search algorithms.

scientific article published on December 2006

Wild and Cultivated Species of Rice Have Distinctive Proteomic Responses to Drought

scientific article published on 19 August 2020

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