List of works - Julien Bobe

A S100 homologue mRNA isolated by differential display PCR is down-regulated in the brook trout (Salvelinus fontinalis) post-ovulatory ovary.

scientific article

A comparison between egg trancriptomes of cod and salmon reveals species-specific traits in eggs for each species

scientific article

A novel, functional, and highly divergent sex hormone-binding globulin that may participate in the local control of ovarian functions in salmonids.

scientific article published on 13 March 2008

A tumor necrosis factor decoy receptor homologue is up-regulated in the brook trout (Salvelinus fontinalis) ovary at the completion of ovulation.

scientific article

Agonistic effect of imidazole and triazole fungicides on in vitro oocyte maturation in rainbow trout (Oncorhynchus mykiss).

scientific article

Aromatase expression in Xenopus oocytes: a three cell-type model for the ovarian estradiol synthesis.

scientific article published on 7 September 2011

Aromatase is expressed and active in the rainbow trout oocyte during final oocyte maturation.

scientific article published on 8 June 2011

CMA restricted to mammals and birds: myth or reality?

scientific article published in 2018

Cellular and molecular evidence for a role of tumor necrosis factor alpha in the ovulatory mechanism of trout.

scientific article

Characterization of goldfish fin cells in culture: some evidence of an epithelial cell profile.

scientific article

Characterization of rainbow trout egg quality: a case study using four different breeding protocols, with emphasis on the incidence of embryonic malformations

scientific article published on 21 November 2006

Characterization of rainbow trout gonad, brain and gill deep cDNA repertoires using a Roche 454-Titanium sequencing approach

scientific article

Compacting and correcting Trinity and Oases RNA-Seq de novo assemblies

scientific article published on 16 February 2017

Compacting and correcting Trinity and Oases RNA-Seq de novo assemblies

scholarly article published 12 July 2016

Comparative transcriptomic analysis of follicle-enclosed oocyte maturational and developmental competence acquisition in two non-mammalian vertebrates

scientific article

Connectivity of vertebrate genomes: Paired-related homeobox (Prrx) genes in spotted gar, basal teleosts, and tetrapods

scientific article

Conservation of death receptor-6 in avian and piscine vertebrates

scientific article published on 01 June 2001

Correction: Nme Gene Family Evolutionary History Reveals Pre-Metazoan Origins and High Conservation between Humans and the Sea Anemone, Nematostella vectensis

scientific article published on 17 November 2010

Corrigendum: The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons.

scientific article published in May 2016

Do not put all teleosts in one net: focus on the sox2 and pou2 genes.

scientific article published on 8 November 2012

Domestication is associated with differential expression of pikeperch egg proteins involved in metabolism, immune response and protein folding

scientific article published on 11 June 2020

Double maternal-effect: duplicated nucleoplasmin 2 genes, npm2a and npm2b, with essential but distinct functions are shared by fish and tetrapods

article

Effects of the anti-androgen cyproterone acetate (CPA) on oocyte meiotic maturation in rainbow trout (Oncorhynchus mykiss).

scientific article

Egg and sperm quality in fish

scientific article published on 09 March 2009

Embryonic muscle development in rainbow trout (Oncorhynchus mykiss): a scanning electron microscopy and immunohistological study

scientific article published on 01 March 2000

Evolution after Whole-Genome Duplication: Teleost MicroRNAs

scientific article published on 01 July 2021

Evolution of gene expression after whole-genome duplication: New insights from the spotted gar genome.

scientific article

Evolutionary history of c‐myc in teleosts and characterization of the duplicated c‐myca genes in goldfish embryos ⬇️

scientific article published on December 28, 2011

Evolutionary history of glucose-6-phosphatase encoding genes in vertebrate lineages: towards a better understanding of the functions of multiple duplicates.

scientific article

Foxl2 and Its Relatives Are Evolutionary Conserved Players in Gonadal Sex Differentiation

scientific article

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database

scientific article

Genome-wide identification of novel ovarian-predominant miRNAs: new insights from the medaka (Oryzias latipes)

scientific article published on 10 January 2017

Hydration of rainbow trout oocyte during meiotic maturation and in vitro regulation by 17,20{beta}-dihydroxy-4-pregnen-3-one and cortisol.

scientific article published in March 2006

Identification and characterization of a catechol-o-methyltransferase cDNA in the catfish Heteropneustes fossilis: Tissue, sex and seasonal variations, and effects of gonadotropin and 2-hydroxyestradiol-17β on mRNA expression.

scientific article published on 8 December 2016

Identification of new participants in the rainbow trout (Oncorhynchus mykiss) oocyte maturation and ovulation processes using cDNA microarrays

scientific article

Identification of the master sex determining gene in Northern pike (Esox lucius) reveals restricted sex chromosome differentiation

scientific article published on 22 August 2019

In silico identification and molecular characterization of genes predominantly expressed in the fish oocyte

scientific article

Inhibition of zygotic DNA repair: transcriptome analysis of the offspring in trout (Oncorhynchus mykiss).

scientific article published in January 2015

Insulin-like growth factor-binding protein (IGFBP)-1, -2, -3, -4, -5, and -6 and IGFBP-related protein 1 during rainbow trout postvitellogenesis and oocyte maturation: molecular characterization, expression profiles, and hormonal regulation.

scientific article published on 26 January 2006

Large scale real-time PCR analysis of mRNA abundance in rainbow trout eggs in relationship with egg quality and post-ovulatory ageing

scientific article published in November 2005

Lighting chaperone-mediated autophagy (CMA) evolution with an ancient LAMP: the existence of a functional CMA activity in fish

scientific article published on 10 August 2020

Maternally inherited npm2 mRNA is crucial for egg developmental competence in zebrafish.

scientific article published on 9 July 2014

MiR-202 controls female fecundity by regulating medaka oogenesis

scholarly article by Stéphanie Gay published in September 2018

Microarray-based analysis of fish egg quality after natural or controlled ovulation

scientific article

Molecular cloning and expression of a TNF receptor and two TNF ligands in the fish ovary.

scientific article published in June 2001

Multiple vitellogenins in zebrafish (Danio rerio): quantitative inventory of genes, transcripts and proteins, and relation to egg quality

scientific article published on 07 June 2018

Nme gene family evolutionary history reveals pre-metazoan origins and high conservation between humans and the sea anemone, Nematostella vectensis

scientific article

Nme protein family evolutionary history, a vertebrate perspective

scientific article

Oocyte-somatic cells interactions, lessons from evolution.

scientific article

Oogenesis in teleosts: how eggs are formed.

scientific article published on 06 June 2009

Ovarian function of the trout preovulatory ovary: new insights from recent gene expression studies.

scientific article

Post-ovulatory ageing and egg quality: a proteomic analysis of rainbow trout coelomic fluid

scientific article

Prochloraz-induced oocyte maturation in rainbow trout (Oncorhynchus mykiss), a molecular and functional analysis.

scientific article published on 30 August 2010

Reply to: 'Subfunctionalization versus neofunctionalization after whole-genome duplication'

scientific article published on 01 July 2018

Scrambled eggs: Proteomic portraits and novel biomarkers of egg quality in zebrafish (Danio rerio).

scientific article published on 16 November 2017

Sex hormone-binding globulins characterization and gonadal gene expression during sex differentiation in the rainbow trout, Oncorhynchus mykiss.

scientific article

Sexually dimorphic gene expressions in eels: useful markers for early sex assessment in a conservation context

scientific article published on 23 September 2016

Targeted gene expression profiling in the rainbow trout (Oncorhynchus mykiss) ovary during maturational competence acquisition and oocyte maturation.

scientific article published on 25 February 2004

The NME gene family in zebrafish oogenesis and early development.

scientific article published on 11 March 2011

The Nme gene family in fish.

scientific article published on 08 April 2012

The advantage of channeling nucleotides for very processive functions

scientific article

The ovarian reserve in mammals: a functional and evolutionary perspective.

scientific article published on 05 August 2011

The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates

scientific article

The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons

scientific article

Transcriptomic Profiling of Egg Quality in Sea Bass (Dicentrarchus labrax) Sheds Light on Genes Involved in Ubiquitination and Translation

scientific article published on 08 February 2017

Transfection of isolated rainbow trout, Oncorhynchus mykiss, granulosa cells through chemical transfection and electroporation at 12°C.

scientific article published on 6 May 2015

Two unrelated putative membrane-bound progestin receptors, progesterone membrane receptor component 1 (PGMRC1) and membrane progestin receptor (mPR) beta, are expressed in the rainbow trout oocyte and exhibit similar ovarian expression patterns

scientific article

VisEgg: a robust phenotyping tool to assess rainbow trout egg features and viability

scientific article published on 30 June 2020

What makes a bad egg? Egg transcriptome reveals dysregulation of translational machinery and novel fertility genes important for fertilization

scientific article published on 15 July 2019

X-Linked Retinitis Pigmentosa 2 Is a Novel Maternal-Effect Gene Required for Left-Right Asymmetry in Zebrafish

scientific article published in July 2015

is a novel maternal-effect gene in fish that is required for early embryonic success

article

nanog 5′-upstream sequence, DNA methylation, and expression in gametes and early embryo reveal striking differences between teleosts and mammals ⬇️

scientific article published on October 20, 2011

List of works by Julien Bobe

A S100 homologue mRNA isolated by differential display PCR is down-regulated in the brook trout (Salvelinus fontinalis) post-ovulatory ovary.

A comparison between egg trancriptomes of cod and salmon reveals species-specific traits in eggs for each species

A novel, functional, and highly divergent sex hormone-binding globulin that may participate in the local control of ovarian functions in salmonids.

A tumor necrosis factor decoy receptor homologue is up-regulated in the brook trout (Salvelinus fontinalis) ovary at the completion of ovulation.

Agonistic effect of imidazole and triazole fungicides on in vitro oocyte maturation in rainbow trout (Oncorhynchus mykiss).

Aromatase expression in Xenopus oocytes: a three cell-type model for the ovarian estradiol synthesis.

Aromatase is expressed and active in the rainbow trout oocyte during final oocyte maturation.

CMA restricted to mammals and birds: myth or reality?

Cellular and molecular evidence for a role of tumor necrosis factor alpha in the ovulatory mechanism of trout.

Characterization of goldfish fin cells in culture: some evidence of an epithelial cell profile.

Characterization of rainbow trout egg quality: a case study using four different breeding protocols, with emphasis on the incidence of embryonic malformations

Characterization of rainbow trout gonad, brain and gill deep cDNA repertoires using a Roche 454-Titanium sequencing approach

Compacting and correcting Trinity and Oases RNA-Seq de novo assemblies

Compacting and correcting Trinity and Oases RNA-Seq de novo assemblies

Comparative transcriptomic analysis of follicle-enclosed oocyte maturational and developmental competence acquisition in two non-mammalian vertebrates

Connectivity of vertebrate genomes: Paired-related homeobox (Prrx) genes in spotted gar, basal teleosts, and tetrapods

Conservation of death receptor-6 in avian and piscine vertebrates

Correction: Nme Gene Family Evolutionary History Reveals Pre-Metazoan Origins and High Conservation between Humans and the Sea Anemone, Nematostella vectensis

Corrigendum: The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons.

Do not put all teleosts in one net: focus on the sox2 and pou2 genes.

Domestication is associated with differential expression of pikeperch egg proteins involved in metabolism, immune response and protein folding

Double maternal-effect: duplicated nucleoplasmin 2 genes, npm2a and npm2b, with essential but distinct functions are shared by fish and tetrapods

Effects of the anti-androgen cyproterone acetate (CPA) on oocyte meiotic maturation in rainbow trout (Oncorhynchus mykiss).

Egg and sperm quality in fish

Embryonic muscle development in rainbow trout (Oncorhynchus mykiss): a scanning electron microscopy and immunohistological study

Evolution after Whole-Genome Duplication: Teleost MicroRNAs

Evolution of gene expression after whole-genome duplication: New insights from the spotted gar genome.

Evolutionary history of c‐myc in teleosts and characterization of the duplicated c‐myca genes in goldfish embryos ⬇️

Evolutionary history of glucose-6-phosphatase encoding genes in vertebrate lineages: towards a better understanding of the functions of multiple duplicates.

Foxl2 and Its Relatives Are Evolutionary Conserved Players in Gonadal Sex Differentiation

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database

Genome-wide identification of novel ovarian-predominant miRNAs: new insights from the medaka (Oryzias latipes)

Hydration of rainbow trout oocyte during meiotic maturation and in vitro regulation by 17,20{beta}-dihydroxy-4-pregnen-3-one and cortisol.

Identification and characterization of a catechol-o-methyltransferase cDNA in the catfish Heteropneustes fossilis: Tissue, sex and seasonal variations, and effects of gonadotropin and 2-hydroxyestradiol-17β on mRNA expression.

Identification of new participants in the rainbow trout (Oncorhynchus mykiss) oocyte maturation and ovulation processes using cDNA microarrays

Identification of the master sex determining gene in Northern pike (Esox lucius) reveals restricted sex chromosome differentiation

In silico identification and molecular characterization of genes predominantly expressed in the fish oocyte

Inhibition of zygotic DNA repair: transcriptome analysis of the offspring in trout (Oncorhynchus mykiss).

Insulin-like growth factor-binding protein (IGFBP)-1, -2, -3, -4, -5, and -6 and IGFBP-related protein 1 during rainbow trout postvitellogenesis and oocyte maturation: molecular characterization, expression profiles, and hormonal regulation.

Large scale real-time PCR analysis of mRNA abundance in rainbow trout eggs in relationship with egg quality and post-ovulatory ageing

Lighting chaperone-mediated autophagy (CMA) evolution with an ancient LAMP: the existence of a functional CMA activity in fish

Maternally inherited npm2 mRNA is crucial for egg developmental competence in zebrafish.

MiR-202 controls female fecundity by regulating medaka oogenesis

Microarray-based analysis of fish egg quality after natural or controlled ovulation

Molecular cloning and expression of a TNF receptor and two TNF ligands in the fish ovary.

Multiple vitellogenins in zebrafish (Danio rerio): quantitative inventory of genes, transcripts and proteins, and relation to egg quality

Nme gene family evolutionary history reveals pre-metazoan origins and high conservation between humans and the sea anemone, Nematostella vectensis

Nme protein family evolutionary history, a vertebrate perspective

Oocyte-somatic cells interactions, lessons from evolution.

Oogenesis in teleosts: how eggs are formed.

Ovarian function of the trout preovulatory ovary: new insights from recent gene expression studies.

Post-ovulatory ageing and egg quality: a proteomic analysis of rainbow trout coelomic fluid

Prochloraz-induced oocyte maturation in rainbow trout (Oncorhynchus mykiss), a molecular and functional analysis.

Reply to: 'Subfunctionalization versus neofunctionalization after whole-genome duplication'

Scrambled eggs: Proteomic portraits and novel biomarkers of egg quality in zebrafish (Danio rerio).

Sex hormone-binding globulins characterization and gonadal gene expression during sex differentiation in the rainbow trout, Oncorhynchus mykiss.

Sexually dimorphic gene expressions in eels: useful markers for early sex assessment in a conservation context

Targeted gene expression profiling in the rainbow trout (Oncorhynchus mykiss) ovary during maturational competence acquisition and oocyte maturation.

The NME gene family in zebrafish oogenesis and early development.

The Nme gene family in fish.

The advantage of channeling nucleotides for very processive functions

The ovarian reserve in mammals: a functional and evolutionary perspective.

The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates

The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons

Transcriptomic Profiling of Egg Quality in Sea Bass (Dicentrarchus labrax) Sheds Light on Genes Involved in Ubiquitination and Translation

Transfection of isolated rainbow trout, Oncorhynchus mykiss, granulosa cells through chemical transfection and electroporation at 12°C.

Two unrelated putative membrane-bound progestin receptors, progesterone membrane receptor component 1 (PGMRC1) and membrane progestin receptor (mPR) beta, are expressed in the rainbow trout oocyte and exhibit similar ovarian expression patterns

VisEgg: a robust phenotyping tool to assess rainbow trout egg features and viability

What makes a bad egg? Egg transcriptome reveals dysregulation of translational machinery and novel fertility genes important for fertilization

X-Linked Retinitis Pigmentosa 2 Is a Novel Maternal-Effect Gene Required for Left-Right Asymmetry in Zebrafish

is a novel maternal-effect gene in fish that is required for early embryonic success

nanog 5′-upstream sequence, DNA methylation, and expression in gametes and early embryo reveal striking differences between teleosts and mammals ⬇️