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List of works by Robert Kofler

A first survey of the rye (Secale cereale) genome composition through BAC end sequencing of the short arm of chromosome 1R.

scientific article

A guide for the design of evolve and resequencing studies

scientific article

Adaptation of Drosophila to a novel laboratory environment reveals temporally heterogeneous trajectories of selected alleles

scientific article

Benchmarking software tools for detecting and quantifying selection in evolve and resequencing studies

scientific article published on 15 August 2019

Combining experimental evolution with next-generation sequencing: a powerful tool to study adaptation from standing genetic variation

scientific article

Development of microsatellite markers specific for the short arm of rye (Secale cereale L.) chromosome 1.

scientific article

Evolutionary genomics can improve prediction of species' responses to climate change

scientific article published on 14 January 2020

Exploring the gonad transcriptome of two extreme male pigs with RNA-seq

scientific article

Genome-wide patterns of latitudinal differentiation among populations of Drosophila melanogaster from North America

scientific article

Genome-wide patterns of natural variation reveal strong selective sweeps and ongoing genomic conflict in Drosophila mauritiana

scientific article

Gowinda: unbiased analysis of gene set enrichment for genome-wide association studies

scientific article

Massive habitat-specific genomic response in D. melanogaster populations during experimental evolution in hot and cold environments

scientific article

Microarray and deep sequencing cross-platform analysis of the mirRNome and isomiR variation in response to epidermal growth factor

scientific article

MimicrEE2: Genome-wide forward simulations of Evolve and Resequencing studies

article

Multiple platform assessment of the EGF dependent transcriptome by microarray and deep tag sequencing analysis

scientific article

Novel quality metrics allow identifying and generating high‐quality assemblies of piRNA clusters

scientific article published in 2021

PanGEA: identification of allele specific gene expression using the 454 technology.

scientific article published on 14 May 2009

Partial short-read sequencing of a highly inbred Iberian pig and genomics inference thereof

scientific article

PoPoolation DB: a user-friendly web-based database for the retrieval of natural polymorphisms in Drosophila.

scientific article

PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)

scientific article published on 23 October 2011

PoPoolation: a toolbox for population genetic analysis of next generation sequencing data from pooled individuals

scientific article

Pool‐hmm: a Python program for estimating the allele frequency spectrum and detecting selective sweeps from next generation sequencing of pooled samples ⬇️

scientific article published on January 11, 2013

SciRoKo: a new tool for whole genome microsatellite search and investigation

scientific article published on 26 April 2007

Sequencing of pooled DNA samples (Pool-Seq) uncovers complex dynamics of transposable element insertions in Drosophila melanogaster

scientific article

Sequencing pools of individuals — mining genome-wide polymorphism data without big funding

scientific article

Suitability of Different Mapping Algorithms for Genome-wide Polymorphism Scans with Pool-Seq Data

scientific article (publication date: 12 September 2016)

Survey of microsatellite clustering in eight fully sequenced species sheds light on the origin of compound microsatellites

scientific article

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