List of works - Antonio Trovato

A condensation-ordering mechanism in nanoparticle-catalyzed peptide aggregation ⬇️

scientific article

Amyloidogenic Potential of Transthyretin Variants: INSIGHTS FROM STRUCTURAL AND COMPUTATIONAL ANALYSES

scientific article

An efficient algorithm to perform local concerted movements of a chain molecule

scientific article published on 31 March 2015

BACHSCORE. A tool for evaluating efficiently and reliably the quality of large sets of protein structures

Bacterial bioluminescence onset and quenching: a dynamical model for a quorum sensing-mediated property.

scientific article published on 13 December 2017

Common attributes of native-state structures of proteins, disordered proteins, and amyloid.

scholarly article

Design of amino acid sequences to fold into C(alpha)-model proteins

article

Different pulling modes in DNA overstretching: A theoretical analysis

article

Exploring the universe of protein structures beyond the Protein Data Bank

scientific article (publication date: 2010)

Fibril elongation mechanisms of HET-s prion-forming domain: Topological evidence for growth polarity

article

Geometrical model for the native-state folds of proteins

scientific article published on 24 December 2004

Geometry and physics of proteins.

scientific article published in May 2002

Geometry and symmetry presculpt the free-energy landscape of proteins

scientific article

Geometry of proteins: hydrogen bonding, sterics, and marginally compact tubes.

scientific article

Inference of the solvation energy parameters of amino acids using maximum entropy approach

Insight into the structure of amyloid fibrils from the analysis of globular proteins

scientific article

Maximum Entropy Approach for Deducing Amino Acid Interactions in Proteins

scientific article published in Physical Review Letters

Melting behavior and different bound states in three-stranded DNA models

scientific article published on 15 January 2014

Native fold and docking pose discrimination by the same residue-based scoring function.

scientific article published on 5 February 2015

Optimal shapes of compact strings.

scientific article

PASTA 2.0: an improved server for protein aggregation prediction

scientific article

Quorum vs. diffusion sensing: a quantitative analysis of the relevance of absorbing or reflecting boundaries

article

REPETITA: detection and discrimination of the periodicity of protein solenoid repeats by discrete Fourier transform.

scientific article published on June 2009

Sequence repeats and protein structure.

scientific article

Simple solvation potential for coarse-grained models of proteins

scientific article published on 01 May 2007

Simplified Exactly Solvable Model forβ-Amyloid Aggregation

scientific article published in Physical Review Letters

The PASTA server for protein aggregation prediction.

scientific article published on 24 August 2007

Unified perspective on proteins: a physics approach.

scientific article

Vibrational entropy estimation can improve binding affinity prediction for non-obligatory protein complexes.

scientific article published on 10 January 2018

List of works by Antonio Trovato

A condensation-ordering mechanism in nanoparticle-catalyzed peptide aggregation ⬇️

Amyloidogenic Potential of Transthyretin Variants: INSIGHTS FROM STRUCTURAL AND COMPUTATIONAL ANALYSES

An efficient algorithm to perform local concerted movements of a chain molecule

BACHSCORE. A tool for evaluating efficiently and reliably the quality of large sets of protein structures

Bacterial bioluminescence onset and quenching: a dynamical model for a quorum sensing-mediated property.

Common attributes of native-state structures of proteins, disordered proteins, and amyloid.

Design of amino acid sequences to fold into C(alpha)-model proteins

Different pulling modes in DNA overstretching: A theoretical analysis

Exploring the universe of protein structures beyond the Protein Data Bank

Fibril elongation mechanisms of HET-s prion-forming domain: Topological evidence for growth polarity

Geometrical model for the native-state folds of proteins

Geometry and physics of proteins.

Geometry and symmetry presculpt the free-energy landscape of proteins

Geometry of proteins: hydrogen bonding, sterics, and marginally compact tubes.

Inference of the solvation energy parameters of amino acids using maximum entropy approach

Insight into the structure of amyloid fibrils from the analysis of globular proteins

Maximum Entropy Approach for Deducing Amino Acid Interactions in Proteins

Melting behavior and different bound states in three-stranded DNA models

Native fold and docking pose discrimination by the same residue-based scoring function.

Optimal shapes of compact strings.

PASTA 2.0: an improved server for protein aggregation prediction

Quorum vs. diffusion sensing: a quantitative analysis of the relevance of absorbing or reflecting boundaries

REPETITA: detection and discrimination of the periodicity of protein solenoid repeats by discrete Fourier transform.

Sequence repeats and protein structure.

Simple solvation potential for coarse-grained models of proteins

Simplified Exactly Solvable Model forβ-Amyloid Aggregation

The PASTA server for protein aggregation prediction.

Unified perspective on proteins: a physics approach.

Vibrational entropy estimation can improve binding affinity prediction for non-obligatory protein complexes.