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List of works by Madhavi Ganapathiraju

A pilot study on the prevalence of DNA palindromes in breast cancer genomes

scientific article

Active machine learning for transmembrane helix prediction

scientific article

An efficient heuristic method for active feature acquisition and its application to protein-protein interaction prediction.

scientific article

Analysis of LMNB1 duplications in autosomal dominant leukodystrophy provides insights into duplication mechanisms and allele-specific expression

scientific article published on 28 May 2013

Antibody Exchange: Information extraction of biological antibody donation and a web-portal to find donors and seekers

scientific article published on 21 November 2017

Antiviral activity of human OASL protein is mediated by enhancing signaling of the RIG-I RNA sensor

scientific article published on 12 June 2014

Benchmark Evaluation of Protein–Protein Interaction Prediction Algorithms

scientific article published in 2021

Comparison of stability predictions and simulated unfolding of rhodopsin structures

scientific article published in March 2007

Evolutionary insights from suffix array-based genome sequence analysis

scientific article published in August 2007

Generating testable hypotheses for schizophrenia and rheumatoid arthritis pathogenesis by integrating epidemiological, genomic, and protein interaction data

scientific article

Global genetic analysis in mice unveils central role for cilia in congenital heart disease

scientific article

Is the average shortest path length of gene set a reflection of their biological relatedness?

scientific article published in December 2016

LENS: web-based lens for enrichment and network studies of human proteins

scientific article published on 9 December 2015

Mycobacterium tuberculosis and Clostridium difficille interactomes: demonstration of rapid development of computational system for bacterial interactome prediction ⬇️

scientific article published on March 21, 2012

N-gram analysis of 970 microbial organisms reveals presence of biological language models

scientific article

Novel protein-protein interactions highlighting the crosstalk between hypoplastic left heart syndrome, ciliopathies and neurodevelopmental delays

journal article published in 2022

Potentially repurposable drugs for COVID-19 identified from SARS-CoV-2 Host Protein Interactome

scientific article published on 28 May 2020

Predicting gene ontology annotations of orphan GWAS genes using protein-protein interactions

scientific article

Research prioritization through prediction of future impact on biomedical science: a position paper on inference-analytics

scientific article published on 30 August 2013

Retinitis pigmentosa associated with rhodopsin mutations: Correlation between phenotypic variability and molecular effects

scientific article published on 02 October 2006

Schizophrenia interactome with 504 novel protein-protein interactions

scientific article

Schizophrenia interactome: fully-labeled interactome network.

scientific article published on 24 August 2016

Suite of tools for statistical N-gram language modeling for pattern mining in whole genome sequences

scientific article published on 22 July 2012

TMpro web server and web service: transmembrane helix prediction through amino acid property analysis

scientific article published on 27 August 2007

The complex genetics of hypoplastic left heart syndrome.

scientific article

Transmembrane helix prediction using amino acid property features and latent semantic analysis

scientific article

Wiki-pi: a web-server of annotated human protein-protein interactions to aid in discovery of protein function

scientific article (publication date: 2012)

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