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List of works by Nadim J. Ajami

A Lachnospiraceae-dominated bacterial signature in the fecal microbiota of HIV-infected individuals from Colombia, South America.

scientific article published on 14 March 2018

A nosocomial outbreak of norovirus infection masquerading as clostridium difficile infection

scientific article published on April 2009

A paradox of transcriptional and functional innate interferon responses of human intestinal enteroids to enteric virus infection

scientific article published on 09 January 2017

A prospective study of the adaptive changes in the gut microbiome during standard-of-care chemoradiotherapy for gynecologic cancers

scientific article published on 04 March 2021

Age-related changes in the gut microbiota influence systemic inflammation and stroke outcome

scientific article published on 18 July 2018

Alcohol use alters the colonic mucosa-associated gut microbiota in humans

scientific article published on 17 September 2020

Alterations in the gut microbiota can elicit hypertension in rats

scientific article published on 23 December 2016

Alterations of the oral microbiome and cumulative carbapenem exposure are associated with Stenotrophomonas maltophilia infection in patients with acute myeloid leukemia receiving chemotherapy

scientific article published on 16 June 2020

Altered Fecal Microbiome Years after Traumatic Brain Injury

scientific article published on 17 January 2020

Altered Mucosal Microbiome Diversity and Disease Severity in Sjögren Syndrome

scientific article published on 18 April 2016

Antibiotic-mediated bacteriome depletion in ApcMin/+ mice is associated with reduction in mucus-producing goblet cells and increased colorectal cancer progression.

scientific article

Antibiotics in neonatal life increase murine susceptibility to experimental psoriasis

scientific article published on 29 September 2015

Antibody responses to norovirus genogroup GI.1 and GII.4 proteases in volunteers administered Norwalk virus

scientific article published on 3 October 2012

Association of Maternal Gestational Weight Gain With the Infant Fecal Microbiota

scientific article

Association of nasopharyngeal microbiota profiles with bronchiolitis severity in infants hospitalised for bronchiolitis

scientific article

Associations of Nasopharyngeal Metabolome and Microbiome with Severity Among Infants with Bronchiolitis: A Multi-omic Analysis

scientific article published on 21 May 2017

Bile acids improve the antimicrobial effect of rifaximin

scientific article

Biochemical and genetic diversity of enterotoxigenic Escherichia coli associated with diarrhea in United States students in Cuernavaca and Guadalajara, Mexico, 2004-2007.

scientific article

Characterization of cross-reactive norovirus-specific monoclonal antibodies

scientific article

Characterization of oral and gut microbiome temporal variability in hospitalized cancer patients

scientific article published on 28 February 2017

Characterization of the effect of the histidine kinase CovS on response regulator phosphorylation in group A Streptococcus

scientific article

Characterization of the human gut microbiome during travelers' diarrhea

scientific article published on January 2015

Circulating 25-hydroxyvitamin D, nasopharyngeal microbiota, and bronchiolitis severity

scientific article published on 13 November 2018

Complete Genome Sequence of Streptococcus mitis Strain SVGS_061 Isolated from a Neutropenic Patient with Viridans Group Streptococcal Shock Syndrome.

scientific article

Complete Genome Sequence of Vibrio gazogenes ATCC 43942.

scientific article

Conjunctival Microbiome Changes Associated With Soft Contact Lens and Orthokeratology Lens Wearing

scientific article

Correction: Effects of tobacco smoke and electronic cigarette vapor exposure on the oral and gut microbiota in humans: a pilot study

scientific article published on 23 August 2018

Decreased microbiota diversity associated with urinary tract infection in a trial of bacterial interference.

scientific article published on 3 June 2015

Dendritic cell-derived hepcidin sequesters iron from the microbiota to promote mucosal healing

scientific article published on 01 April 2020

Detection of human norovirus in intestinal biopsies from immunocompromised transplant patients

scientific article published on 12 July 2016

Development and accuracy of quantitative real-time polymerase chain reaction assays for detection and quantification of enterotoxigenic Escherichia coli (ETEC) heat labile and heat stable toxin genes in travelers' diarrhea samples

scientific article

Development of the cutaneous microbiome in the preterm infant: A prospective longitudinal study

scientific article published on 27 April 2017

Dietary Nutrients Involved in One-Carbon Metabolism and Colonic Mucosa-Associated Gut Microbiome in Individuals with an Endoscopically Normal Colon

scientific article published on 13 March 2019

Dietary quality and the colonic mucosa-associated gut microbiome in humans

scientific article published on 01 September 2019

Diversity and composition of gut microbiome of cervical cancer patients: Do results of 16S rRNA sequencing and whole genome sequencing approaches align?

scientific article published on 27 March 2021

Early nasal microbiota and acute respiratory infections during the first years of life

scientific article published on 10 May 2019

Effects of tobacco smoke and electronic cigarette vapor exposure on the oral and gut microbiota in humans: a pilot study.

scientific article

Evidence of recombination in coronaviruses implicating pangolin origins of nCoV-2019

scientific article published on 13 February 2020

Expansion of Bacteriophages Is Linked to Aggravated Intestinal Inflammation and Colitis

scientific article published on 01 February 2019

Fecal microbiota transplant promotes response in immunotherapy-refractory melanoma patients

scientific article published on 10 December 2020

Frequency of Tongue Cleaning Impacts the Human Tongue Microbiome Composition and Enterosalivary Circulation of Nitrate

article

Fusobacterium Nucleatum Subspecies Animalis Influences Proinflammatory Cytokine Expression and Monocyte Activation in Human Colorectal Tumors.

scientific article published on 8 May 2017

Gastric Microbiota in Helicobacter pylori-Negative and -Positive Gastritis Among High Incidence of Gastric Cancer Area

scientific article published on 10 April 2019

Gastric microbiota and Helicobacter pylori in Indonesian population

scientific article published on 12 May 2020

Gastric mucosal microbiota in a Mongolian population with gastric cancer and precursor conditions

scientific article published on 04 March 2020

Genetic and Environmental Determinants of Otitis Media in an Indigenous Filipino Population

scientific article published on 02 August 2016

Gut Microbiome Associates With Lifetime Cardiovascular Disease Risk Profile Among Bogalusa Heart Study Participants

scientific article

Gut microbiome diversity is an independent predictor of survival in cervical cancer patients receiving chemoradiation

scientific article published on 22 February 2021

Gut microbiome modulates response to anti-PD-1 immunotherapy in melanoma patients.

scientific article published on 2 November 2017

Gut microbiota as a source of a surrogate antigen that triggers autoimmunity in an immune privileged site

scientific article

Gut microbiota components are associated with fixed airway obstruction in asthmatic patients living in the tropics.

scientific article

Household siblings and nasal and fecal microbiota in infants.

scientific article published on 22 December 2016

Human milk oligosaccharides, milk microbiome and infant gut microbiome modulate neonatal rotavirus infection

scientific article published in Nature Communications

Identification and characterization of a peptide affinity reagent for detection of noroviruses in clinical samples

scientific article

IgA-coated E. coli enriched in Crohn's disease spondyloarthritis promote TH17-dependent inflammation

scientific article

Impact of environmental microbiota on human microbiota of workers in academic mouse research facilities: an observational study

journal article published in 2017

Implementation of a Pan-Genomic Approach to Investigate Holobiont-Infecting Microbe Interaction: A Case Report of a Leukemic Patient with Invasive Mucormycosis

scientific article published on 10 November 2015

Influence of fecal collection conditions and 16S rRNA gene sequencing at two centers on human gut microbiota analysis.

scientific article

Investigating Colonization of the Healthy Adult Gastrointestinal Tract by Fungi.

scientific article

Lung tissue microbial profile in lung cancer is distinct from emphysema

Lyophilized Fecal Microbiota Transplantation Capsules for Recurrent Clostridium difficile Infection

scientific article published on 4 October 2017

MHC variation sculpts individualized microbial communities that control susceptibility to enteric infection.

scientific article

Mapping broadly reactive norovirus genogroup I and II monoclonal antibodies

scientific article

Maternal Fish Consumption in Pregnancy Is Associated with a Bifidobacterium-Dominant Microbiome Profile in Infants

scientific article published on 19 December 2019

Maximal viral information recovery from sequence data using VirMAP

scientific article published in Nature Communications

Metabolomic signatures distinguish the impact of formula carbohydrates on disease outcome in a preterm piglet model of NEC.

scientific article

MicroRNA-146a constrains multiple parameters of intestinal immunity and increases susceptibility to DSS colitis

scientific article published on 10 September 2015

Microbial Reconstitution Reverses Maternal Diet-Induced Social and Synaptic Deficits in Offspring

scientific article

Microbiota-derived acetate protects against respiratory syncytial virus infection through a GPR43-type 1 interferon response

scientific article published on 22 July 2019

Middle ear microbiome differences in indigenous Filipinos with chronic otitis media due to a duplication in the A2ML1 gene

scientific article

Morphine Promotes Colonization of Anastomotic Tissues with Collagenase - Producing Enterococcus faecalis and Causes Leak

scientific article published on 16 August 2016

Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases

scientific article published on 29 May 2019

Murine model of chemotherapy-induced extraintestinal pathogenic Escherichia coli translocation

scientific article published in June 2015

Nasal Airway Microbiota Profile and Severe Bronchiolitis in Infants: A Case-Control Study

scientific article published on 21 December 2016

Neoadjuvant nivolumab or nivolumab plus ipilimumab in operable non-small cell lung cancer: the phase 2 randomized NEOSTAR trial

scientific article published on 18 February 2021

Nodal immune flare mimics nodal disease progression following neoadjuvant immune checkpoint inhibitors in non-small cell lung cancer

scientific article published on 19 August 2021

Noroviruses as a cause of diarrhea in travelers to Guatemala, India, and Mexico

scientific article

Noroviruses: The leading cause of gastroenteritis worldwide ⬇️

scientific article published on July 1, 2010

Observational Cohort Study of Oral Mycobiome and Interkingdom Interactions over the Course of Induction Therapy for Leukemia

scientific article published on 15 April 2020

Oral microbiota reveals signs of acculturation in Mexican American women.

scientific article

Potential role of gastrointestinal microbiota composition in prostate cancer risk.

scientific article published on 4 November 2013

Prebiotics, Probiotics, and Acetate Supplementation Prevent Hypertension in a Model of Obstructive Sleep Apnea

scientific article published on 01 November 2018

Promise and Pragmatism in Clinical Microbiome Research

scientific article published on 21 July 2015

Prospective virome analyses in young children at increased genetic risk for type 1 diabetes

scientific article published on 02 December 2019

Respiratory syncytial virus and rhinovirus bronchiolitis are associated with distinct metabolic pathways

scientific article published on 25 December 2017

Respiratory syncytial virus and rhinovirus severe bronchiolitis are associated with distinct nasopharyngeal microbiota

scientific article published on 06 April 2016

Ribaxamase, an Orally Administered β-Lactamase, Diminishes Changes to Acquired Antimicrobial Resistance of the Gut Resistome in Patients Treated with Ceftriaxone

scientific article published on 22 July 2020

Role of the Gut Microbiome in Obstructive Sleep Apnea-Induced Hypertension

scientific article published on 28 December 2015

Rotavirus enterotoxin NSP4 has mucosal adjuvant properties

scientific article published on March 2010

Rotavirus infection induces glycan availability to promote ileum-specific changes in the microbiome aiding rotavirus virulence

scientific article published on 13 May 2020

SMRT Sequencing of Paramecium Bursaria Chlorella Virus-1 Reveals Diverse Methylation Stability in Adenines Targeted by Restriction Modification Systems

scientific article published on 19 May 2020

Sa1920 – Oral Health and the Colonic Mucosa-Associated Gut Microbiota in Individuals Undergoing Screening Colonoscopy

scientific article published on 07 May 2019

Safety and preliminary efficacy of orally administered lyophilized fecal microbiota product compared with frozen product given by enema for recurrent Clostridium difficile infection: A randomized clinical trial

scientific article published in PLoS ONE

Saturated and Unsaturated Dietary Fats Differentially Modulate Ethanol-Induced Changes in Gut Microbiome and Metabolome in a Mouse Model of Alcoholic Liver Disease

scientific article

Schistosoma mansoni infection is associated with quantitative and qualitative modifications of the mammalian intestinal microbiota

scientific article published in Scientific Reports

Secretory pathway antagonism by calicivirus homologues of Norwalk virus nonstructural protein p22 is restricted to noroviruses ⬇️

scientific article published on September 3, 2012

Sequence type 1 group B Streptococcus, an emerging cause of invasive disease in adults, evolves by small genetic changes

scientific article published on 4 May 2015

Seroepidemiology of norovirus-associated travelers' diarrhea

scientific article

Serum LL-37 level is associated with severity of bronchiolitis and viral etiology

scientific article published on 24 May 2017

Serum Metabolome Is Associated With the Nasopharyngeal Microbiota and Disease Severity Among Infants With Bronchiolitis

scientific article published on 01 May 2019

Serum cathelicidin, nasopharyngeal microbiota, and disease severity among infants hospitalized with bronchiolitis.

scientific article

Single Delivery of High-Diversity Fecal Microbiota Preparation by Colonoscopy Is Safe and Effective in Increasing Microbial Diversity in Active Ulcerative Colitis

scientific article published on 25 April 2017

Sphingolipid metabolism potential in fecal microbiome and bronchiolitis in infants: a case-control study

scientific article

Successful collection of stool samples for microbiome analyses from a large community-based population of elderly men.

scientific article published on 6 July 2017

Temporal changes in gastrointestinal fungi and the risk of autoimmunity during early childhood: the TEDDY study

scientific article published on 01 January 2022

Temporal development of the gut microbiome in early childhood from the TEDDY study

scientific article published in Nature

The Fecal Microbiota Profile and Bronchiolitis in Infants

scientific article published on 27 June 2016

The Gut Microbiome of the Vector Lutzomyia longipalpis Is Essential for Survival of Leishmania infantum

scientific article published on 17 January 2017

The association between anterior nares and nasopharyngeal microbiota in infants hospitalized for bronchiolitis

scientific article published on 3 January 2018

The changing landscape of type 1 diabetes: recent developments and future frontiers

scientific article

The gut mycobiome of the Human Microbiome Project healthy cohort.

scientific article

The human gut microbiome in early-onset type 1 diabetes from the TEDDY study

scientific article published in Nature

The role of gut microbiota in fetal methylmercury exposure: Insights from a pilot study

scientific article published on 25 November 2015

The role of the gastrointestinal microbiome in infectious complications during induction chemotherapy for acute myeloid leukemia.

scientific article

Transmissible microbial and metabolomic remodeling by soluble dietary fiber improves metabolic homeostasis

scientific article published on 4 June 2015

Tumor Microbiome Diversity and Composition Influence Pancreatic Cancer Outcomes

scientific article published on 01 August 2019

Water management impacts rice methylmercury and the soil microbiome

scientific article published on 19 July 2016

Wild Mouse Gut Microbiota Promotes Host Fitness and Improves Disease Resistance.

scientific article published on 17 October 2017

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