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List of works by Matthew C. Lorincz

ALEA: a toolbox for allele-specific epigenomics analysis

scientific article published on 21 January 2014

Activation of Endogenous Retroviruses in Dnmt1(-/-) ESCs Involves Disruption of SETDB1-Mediated Repression by NP95 Binding to Hemimethylated DNA.

scientific article

An ultra-low-input native ChIP-seq protocol for genome-wide profiling of rare cell populations

scientific article published on 21 January 2015

An unmethylated 3' promoter-proximal region is required for efficient transcription initiation

scientific article

ChAsE: chromatin analysis and exploration tool.

scientific article published on 4 July 2016

DNA methylation and SETDB1/H3K9me3 regulate predominantly distinct sets of genes, retroelements, and chimeric transcripts in mESCs

scientific article published on June 2011

DNA methylation density influences the stability of an epigenetic imprint and Dnmt3a/b-independent de novo methylation.

scientific article published on November 2002

Detection and isolation of gene-corrected cells in Gaucher disease via a fluorescence-activated cell sorter assay for lysosomal glucocerebrosidase activity.

scientific article

Development and application of an integrated allele-specific pipeline for methylomic and epigenomic analysis (MEA).

scientific article published on 15 June 2018

Distinct roles of KAP1, HP1 and G9a/GLP in silencing of the two-cell-specific retrotransposon MERVL in mouse ES cells

scientific article (publication date: 4 June 2013)

Dynamic and flexible H3K9me3 bridging via HP1β dimerization establishes a plastic state of condensed chromatin.

scientific article published on 19 April 2016

Dynamics, stability and inheritance of somatic DNA methylation imprints

scientific article published on 20 May 2006

Epigenetic modifier drugs trigger widespread transcription of endogenous retroviruses

scientific article published in June 2017

Evidence for Converging DNA Methylation Pathways in Placenta and Cancer

scientific article

Evolution of imprinting via lineage-specific insertion of retroviral promoters

scientific article published on 12 December 2019

Genome-wide mapping of chromatin marks from 1,000 cells to study epigenetic reprogramming in primordial germ cells.

scientific article published on 18 March 2013

H2A.Z and DNA methylation: irreconcilable differences

scientific article published on 11 March 2009

H3K9me3-binding proteins are dispensable for SETDB1/H3K9me3-dependent retroviral silencing ⬇️

scientific article published on July 20, 2011

H3S10ph broadly marks early-replicating domains in interphase ESCs and shows reciprocal antagonism with H3K9me2.

scientific article

Histone H3K4 demethylation is negatively regulated by histone H3 acetylation in Saccharomyces cerevisiae

scientific article

Histone H3K9 Methyltransferase G9a in Oocytes Is Essential for Preimplantation Development but Dispensable for CG Methylation Protection

scientific article published on 01 April 2019

Inter-Strain Epigenomic Profiling Reveals a Candidate IAP Master Copy in C3H Mice

scientific article published on 21 July 2020

Kinetics and epigenetics of retroviral silencing in mouse embryonic stem cells defined by deletion of the D4Z4 element

scientific article published on 11 June 2013

LTR retrotransposons transcribed in oocytes drive species-specific and heritable changes in DNA methylation

scientific article published in Nature Communications

Long Terminal Repeats: From Parasitic Elements to Building Blocks of the Transcriptional Regulatory Repertoire

scientific article published on June 2016

Lysine methyltransferase G9a is required for de novo DNA methylation and the establishment, but not the maintenance, of proviral silencing ⬇️

scientific article published on March 22, 2011

Maternal DNMT3A-dependent de novo methylation of the paternal genome inhibits gene expression in the early embryo

scientific article published on 27 October 2020

Methylation-Mediated Proviral Silencing Is Associated with MeCP2 Recruitment and Localized Histone H3 Deacetylation ⬇️

scientific article published on December 1, 2001

NSD1-deposited H3K36me2 directs de novo methylation in the mouse male germline and counteracts Polycomb-associated silencing

scientific article published on 14 September 2020

On the role of H3.3 in retroviral silencing

scientific article published on 01 August 2017

Primate-specific endogenous retrovirus-driven transcription defines naive-like stem cells

scientific article

Proviral silencing in embryonic stem cells requires the histone methyltransferase ESET.

scientific article

RNA polymerase II: just stopping by

scientific article published on 01 July 2007

Rare treatable neurologic diseases

scientific article published on 01 November 2012

Regulation of DNA methylation turnover at LTR retrotransposons and imprinted loci by the histone methyltransferase Setdb1

scientific article

Reporters of gene expression: enzymatic assays

scientific article published on 01 May 2001

Repression of germline genes by PRC1.6 and SETDB1 in the early embryo precedes DNA methylation-mediated silencing

scientific article published on 02 December 2021

Retrotransposon-induced heterochromatin spreading in the mouse revealed by insertional polymorphisms

scientific article

SETD2 regulates the maternal epigenome, genomic imprinting and embryonic development

scientific article published on 29 April 2019

Setdb1 is required for germline development and silencing of H3K9me3-marked endogenous retroviruses in primordial germ cells

scientific article

Setdb1 is required for germline development and silencing of H3K9me3-marked endogenous retroviruses in primordial germ cells.

scientific article published in January 2015

Setting the chromatin stage in oocytes

scientific article published on 01 April 2020

Silencing of endogenous retroviruses: when and why do histone marks predominate?

scientific article published on 15 December 2011

Systematic identification of factors for provirus silencing in embryonic stem cells

scientific article

Targeting of EZH2 to a defined genomic site is sufficient for recruitment of Dnmt3a but not de novo DNA methylation.

scientific article

Targeting silence: the use of site-specific recombination to introduce in vitro methylated DNA into the genome.

scientific article

Transcription shapes genome-wide histone acetylation patterns

scientific article published on 11 January 2021

VisRseq: R-based visual framework for analysis of sequencing data

scientific article

Vitamin C induces Tet-dependent DNA demethylation and a blastocyst-like state in ES cells

scientific article published on 30 June 2013

hnRNP K coordinates transcriptional silencing by SETDB1 in embryonic stem cells

scientific article

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