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List of works by Olivier Bodenreider

"Hybrid Topics" - Facilitating the Interpretation of Topics Through the Addition of MeSH Descriptors to Bags of Words

scientific article published in January 2017

A framework for assessing the consistency of drug classes across sources

scientific article

A framework for characterizing drug information sources.

scientific article

A framework for comparing phenotype annotations of orthologous genes

scientific article

A graph-based approach to auditing RxNorm

scientific article published on 24 April 2009

A graph-based recovery and decomposition of Swanson’s hypothesis using semantic predications ⬇️

scientific article published on September 28, 2012

A mutation-centric approach to identifying pharmacogenomic relations in text

scientific article

A time-indexed reference standard of adverse drug reactions

scientific article

A unified framework for managing provenance information in translational research

scientific article

Advancing translational research with the Semantic Web

scientific article (publication date: 9 May 2007)

Aligning knowledge sources in the UMLS: methods, quantitative results, and applications.

scientific article published in January 2004

Aligning representations of anatomy using lexical and structural methods

scientific article

Alignment of multiple ontologies of anatomy: deriving indirect mappings from direct mappings to a reference

scientific article published in January 2005

Alignment of the UMLS semantic network with BioTop: methodology and assessment

scientific article published on June 2009

An approximate matching method for clinical drug names ⬇️

scientific article published on October 22, 2011

An ontology-driven semantic mashup of gene and biological pathway information: application to the domain of nicotine dependence

scientific article published on 29 February 2008

Analyzing U.S. prescription lists with RxNorm and the ATC/DDD Index

scientific article published on 14 November 2014

Analyzing polysemous concepts from a clinical perspective: application to auditing concept categorization in the UMLS

scientific article

Approaches to Supporting the Analysis of Historical Medication Datasets with RxNorm

scientific article

Approaches to eliminating cycles in the UMLS Metathesaurus: naïve vs. formal

scientific article

Aspects of the Taxonomic Relation in the Biomedical Domain

scientific article published on 01 October 2001

Assessing the consistency of a biomedical terminology through lexical knowledge

scientific article

Assessing the enrichment of dietary supplement coverage in the Unified Medical Language System

scientific article published on 17 September 2020

Auditing SNOMED CT hierarchical relations based on lexical features of concepts in non-lattice subgraphs

scientific article published on 20 December 2017

Auditing associative relations across two knowledge sources

scientific article

Auditing the NCI thesaurus with semantic web technologies

scientific article

Automatic Identification of Individual Drugs in Death Certificates

scientific article published on 01 August 2019

Besides precision & recall: exploring alternative approaches to evaluating an automatic indexing tool for MEDLINE.

scientific article published in January 2006

Bio-ontologies: current trends and future directions

scientific article (publication date: September 2006)

Classifying diseases with respect to anatomy: a study in SNOMED CT

scientific article

Clinical Ontologies for Discovery Applications

Co-evolutionary rates of functionally related yeast genes.

scientific article published on January 2006

Combining lexical and semantic methods of inter-terminology mapping using the UMLS.

scientific article

Combining relevance assignment with quality of the evidence to support guideline development ⬇️

scientific article published on January 1, 2010

Comparing and evaluating terminology services application programming interfaces: RxNav, UMLSKS and LexBIG.

scientific article

Comparing associative relationships among equivalent concepts across ontologies

scientific article published in January 2004

Comparing the representation of anatomy in the FMA and SNOMED CT.

scientific article published in January 2006

Comparing two approaches for aligning representations of anatomy

scientific article

Comparison of three commercial knowledge bases for detection of drug-drug interactions in clinical decision support

scientific article

Context-driven automatic subgraph creation for literature-based discovery

scientific article published on 7 February 2015

Coverage of rare disease names in standard terminologies and implications for patients, providers, and research

scientific article published on 14 November 2014

Creating a Translational Medicine Ontology

Creating a Translational Medicine Ontology

Desiderata for an authoritative Representation of MeSH in RDF

scientific article

Design and implementation of a personal medication record-MyMedicationList.

scientific article

Don't Like RDF Reification? Making Statements about Statements Using Singleton Property

scientific article

Eliciting the Intension of Drug Value Sets - Principles and Quality Assurance Applications

scientific article

Enabling complex queries to drug information sources through functional composition ⬇️

scientific article published on January 1, 2013

Enhancing biomedical ontologies through alignment of semantic relationships: exploratory approaches

scientific article published in January 2006

Evaluating drug-drug interaction information in NDF-RT and DrugBank

scientific article published on 11 May 2015

Evaluation of WordNet as a source of lay knowledge for molecular biology and genetic diseases: a feasibility study

scientific article published in January 2003

Evaluation of the UMLS as a terminology and knowledge resource for biomedical informatics.

scientific article

Experience in Aligning Anatomical Ontologies

scientific article

Experience in reasoning with the foundational model of anatomy in OWL DL.

scientific article

Exploiting UMLS semantics for checking semantic consistency among UMLS concepts ⬇️

scientific article published on January 1, 2010

Exploring adverse drug events at the class level

scientific article published on May 2015

Exploring pharmacoepidemiologic groupings of drugs from a clinical perspective

scientific article

Exploring semantic groups through visual approaches

scientific article

Exposing Provenance Metadata Using Different RDF Models ⬇️

Extending the coverage of phenotypes in SNOMED CT through post-coordination.

scientific article published on January 2015

Extracting Rx information from clinical narrative ⬇️

scientific article published on September 1, 2010

Fingerprinting Biomedical Terminologies--Automatic Classification and Visualization of Biomedical Vocabularies through UMLS Semantic Group Profiles.

scientific article published on January 2015

From "glycosyltransferase" to "congenital muscular dystrophy": integrating knowledge from NCBI Entrez Gene and the Gene Ontology

scientific article published on January 2007

From Phenotype to Genotype: Experiences in Navigating the Available Information Resources

From concept representations to ontologies: a paradigm shift in health informatics?

scientific article

Gene Expression Correlation and Gene Ontology-Based Similarity: An Assessment of Quantitative Relationships

scientific article published on 01 October 2004

Genestrace: phenomic knowledge discovery via structured terminology.

scientific article

Global similarity and local divergence in human and mouse gene co-expression networks

scientific article published on 12 September 2006

Graphical visualization and navigation of genetic disease information

scientific article

Harnessing scientific literature reports for pharmacovigilance. Prototype software analytical tool development and usability testing

scientific article published on 22 March 2017

Identification of cis-regulatory elements in gene co-expression networks using A-GLAM.

scientific article published on January 2009

Identifying mismatches in alignments of large anatomical ontologies

scientific article

Incorporating Ontology-Driven Similarity Knowledge into Functional Genomics: An Exploratory Study

scientific article published on 01 May 2004

Integrating the UMLS into an RDF-Based Biomedical Knowledge Repository.

scientific article

Interoperability between phenotypes in research and healthcare terminologies--Investigating partial mappings between HPO and SNOMED CT

scientific article

Interoperability of Disease Concepts in Clinical and Research Ontologies: Contrasting Coverage and Structure in the Disease Ontology and SNOMED CT.

scientific article published in January 2017

Interoperability of Medication Classification Systems: Lessons Learned Mapping Established Pharmacologic Classes (EPCs) to SNOMED CT.

scientific article published in January 2017

Investigating drug classes in biomedical terminologies from the perspective of clinical decision support ⬇️

scientific article published on November 13, 2010

Investigating subsumption in SNOMED CT: an exploration into large description logic-based biomedical terminologies

scientific article

Issues in creating and maintaining value sets for clinical quality measures ⬇️

scientific article published on November 3, 2012

Issues in integrating epidemiology and research information in oncology: experience with ICD-O3 and the NCI Thesaurus.

scientific article published on 11 October 2007

Issues in mapping LOINC laboratory tests to SNOMED CT

scientific article

Issues in the classification of disease instances with ontologies.

scientific article published on January 2005

Large-scale, Exhaustive Lattice-based Structural Auditing of SNOMED CT ⬇️

scientific article published on November 13, 2010

Law and order: assessing and enforcing compliance with ontological modeling principles in the Foundational Model of Anatomy

scientific article published on 6 September 2005

Lessons learned from cross-validating alignments between large anatomical ontologies.

scientific article published on January 2007

Leveraging MEDLINE indexing for pharmacovigilance - Inherent limitations and mitigation strategies

scientific article published on 2 September 2015

Leveraging terminological resources for mapping between rare disease information sources ⬇️

scientific article published on January 1, 2013

Looking for Anemia (and Other Disorders) in SNOMED CT: Comparison of Three Approaches and Practical Implications.

scientific article

MaPLE: A MapReduce Pipeline for Lattice-based Evaluation and Its Application to SNOMED CT

scientific article published on 01 October 2014

Mapping data elements to terminological resources for integrating biomedical data sources

scientific article

Medical concept representation: the years beyond 2000 ⬇️

scientific article published on January 1, 2013

MetaMap Lite in Excel: Biomedical Named-Entity Recognition for Non-Technical Users

scientific article published in January 2017

Methods for managing variation in clinical drug names ⬇️

scientific article published on November 13, 2010

Metrics for assessing the quality of value sets in clinical quality measures

scientific article

Mining Association Rules among Gene Functions in Clusters of Similar Gene Expression Maps

article

Mining Relation Reversals in the Evolution of SNOMED CT Using MapReduce

scientific article published on 23 March 2015

Mining non-lattice subgraphs for detecting missing hierarchical relations and concepts in SNOMED CT.

scientific article

MyMedicationList: integrating personal medication records with resources.

scientific article

Non-lexical approaches to identifying associative relations in the gene ontology.

scientific article

Normalizing Dietary Supplement Product Names Using the RxNorm Model

scientific article published on 01 August 2019

Of mice and men: aligning mouse and human anatomies

scientific article published in January 2005

Predictive Integration of Gene Ontology-Driven Similarity and Functional Interactions

scientific article

Preparing for the ICD-10-CM Transition: Automated Methods for Translating ICD Codes in Clinical Phenotype Definitions

scientific article

Provenance Context Entity (PaCE): Scalable Provenance Tracking for Scientific RDF Data

Quality assurance in LOINC using Description Logic ⬇️

scientific article published on November 3, 2012

Representation of roles in biomedical ontologies: a case study in functional genomics.

scientific article

RxNav: a progress report

scientific article published in January 2005

RxNav: a web service for standard drug information.

scientific article published in January 2006

Semantic Predications for Complex Information Needs in Biomedical Literature

scientific article published on 01 January 2011

Semantic webs for life sciences

scientific article

Strength in numbers: exploring redundancy in hierarchical relations across biomedical terminologies.

scientific article

Terminology Status APIs - Mapping Obsolete Codes to Current RxNorm, SNOMED CT, and LOINC Concepts

scientific article published in January 2017

The Drug Data to Knowledge Pipeline: Large-Scale Claims Data Classification for Pharmacologic Insight

scientific article

The NLM value set authority center

scientific article

The National Library of Medicine Pill Image Recognition Challenge: An Initial Report

scientific article published on 01 October 2016

The Ontology-Epistemology Divide: A Case Study in Medical Terminology

The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside ⬇️

scientific article (publication date: 17 May 2011)

The Unified Medical Language System (UMLS): integrating biomedical terminology

scientific article

The biological function of some human transcription factor binding motifs varies with position relative to the transcription start site

scientific article

The caBIG terminology review process

scientific article

The digital revolution in phenotyping

scientific article published on 29 September 2015

The foundational model of anatomy in OWL: Experience and perspectives

scientific article published on January 2006

The lexical properties of the gene ontology.

scientific article published in January 2002

The new International Classification of Diseases 11th edition: a comparative analysis with ICD-10 and ICD-10-CM

scientific article published on 01 May 2020

Toward an automatic method for extracting cancer- and other disease-related point mutations from the biomedical literature ⬇️

scientific article published on December 7, 2010

Toward multimodal signal detection of adverse drug reactions

scientific article published on 25 October 2017

Trends in Fetal Medicine: A 10-Year Bibliometric Analysis of Prenatal Diagnosis

scientific article

Two approaches to integrating phenotype and clinical information

scientific article

Using SNOMED CT in combination with MedDRA for reporting signal detection and adverse drug reactions reporting

scientific article

Using SPARQL to Test for Lattices: application to quality assurance in biomedical ontologies

article

Using WordNet to improve the mapping of data elements to UMLS for data sources integration.

scientific article

Using description logics to evaluate the consistency of drug-class membership relations in NDF-RT.

scientific article

Using the RxNorm web services API for quality assurance purposes

scientific article

Using the abstraction network in complement to description logics for quality assurance in biomedical terminologies - a case study in SNOMED CT ⬇️

scientific article published on January 1, 2010

Utilizing the UMLS for semantic mapping between terminologies.

scientific article published in January 2005

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