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List of works by Anita Burgun

A Web Terminology Server Using UMLS for the Description of Medical Procedures ⬇️

scientific article published on September 1, 1997

A contextual coding system for transplantation and end stage diseases

scientific article published on January 2003

A first evaluation of a pedagogical network for medical students at the University Hospital of Rennes.

scientific article

A framework for comparing phenotype annotations of orthologous genes

scientific article

A knowledge management platform for documentation of case reports in pharmacovigilance.

scientific article published on January 2009

A method exploiting syntactic patterns and the UMLS semantics for aligning biomedical ontologies: the case of OBO disease ontologies

scientific article published on 22 May 2007

A network of web multimedia medical information servers for a medical school and university hospital.

scientific article

A novel data-driven workflow combining literature and electronic health records to estimate comorbidities burden for a specific disease: a case study on autoimmune comorbidities in patients with celiac disease

scientific article published on 29 September 2017

A system that facilitates the orientation within procedure nomenclatures through a semantic approach ⬇️

scientific article published on October 1, 1994

A transversal approach to predict gene product networks from ontology-based similarity

scientific article

A unified representation of findings in clinical radiology using the UMLS and DICOM.

scientific article published on 21 February 2008

A unified structural/terminological interoperability framework based on LexEVS: application to TRANSFoRm

scientific article published on 09 April 2013

Accessing and integrating data and knowledge for biomedical research.

scientific article

Adverse Drug Reaction Identification and Extraction in Social Media: A Scoping Review

scientific article

Aggregating UMLS semantic types for reducing conceptual complexity.

scientific article

Aligning biomedical ontologies using lexical methods and the UMLS: the case of disease ontologies.

scientific article published on January 2006

Aligning knowledge sources in the UMLS: methods, quantitative results, and applications.

scientific article published in January 2004

Amplification of Terminologia anatomica by French language terms using Latin terms matching algorithm: a prototype for other language

scientific article

An ontological analysis of medical Bayesian indicators of performance

scientific article published on 03 January 2017

An ontology-based annotation of cardiac implantable electronic devices to detect therapy changes in a national registry

scientific article published on 11 July 2014

Analyzing polysemous concepts from a clinical perspective: application to auditing concept categorization in the UMLS

scientific article

Aspects of the Taxonomic Relation in the Biomedical Domain

scientific article published on 01 October 2001

Assessing the consistency of a biomedical terminology through lexical knowledge

scientific article

Automated classification of free-text pathology reports for registration of incident cases of cancer.

scientific article published on 26 July 2011

Automatic computation of CHA2DS2-VASc score: information extraction from clinical texts for thromboembolism risk assessment.

scientific article published on 22 October 2011

Automatic concept extraction from spoken medical reports

scientific article published on July 2003

Automatic enrichment of the unified medical language system starting from the ADM knowledge base.

scientific article published in January 1999

Big Data and machine learning in radiation oncology: State of the art and future prospects

scientific article

BioMeKe: an ontology-based biomedical knowledge extraction system devoted to transcriptome analysis.

scientific article published on January 2003

Classifying diseases with respect to anatomy: a study in SNOMED CT

scientific article

Clinical data integration model. Core interoperability ontology for research using primary care data.

scientific article

Collaborative environment for clinical reasoning and distance learning sessions.

scientific article

Combining evidence, biomedical literature and statistical dependence: new insights for functional annotation of gene sets

scientific article

Combining voice recognition and automatic indexing of medical reports.

scientific article

Comparing Drools and ontology reasoning approaches for telecardiology decision support.

scientific article published on January 2012

Computer assisted medical diagnosis using the Web.

scientific article published in November 1997

Creating a magnetic resonance imaging ontology.

scientific article published on January 2011

Desiderata for domain reference ontologies in biomedicine

scientific article published on 17 October 2005

Design considerations for an ontology in the domain of organ failure and transplantation.

scientific article published on January 2002

Designing a sub-set of the UMLS knowledge base applied to a clinical domain: methods and evaluation.

scientific article published on January 1994

Detailed clinical modelling approach to data extraction from heterogeneous data sources for clinical research

scientific article published on 7 April 2014

Detection of Cases of Noncompliance to Drug Treatment in Patient Forum Posts: Topic Model Approach (Preprint)

Detection of Cases of Noncompliance to Drug Treatment in Patient Forum Posts: Topic Model Approach.

scientific article published on 14 March 2018

Developing the ontological foundations of a terminological system for end-stage diseases, organ failure, dialysis and transplantation

scientific article published on July 2003

Discussion of "biomedical ontologies: toward scientific debate".

scientific article published on May 2011

Documentation in pharmacovigilance: using an ontology to extend and normalize Pubmed queries.

scientific article published on January 2010

Erratum to: Partnering with patients in translational oncology research: ethical approach.

scientific article published on 23 April 2017

Evaluation of Internet Social Networks using Net scoring Tool: A Case Study in Adverse Drug Reaction Mining

scientific article published on January 2015

Evaluation of WordNet as a source of lay knowledge for molecular biology and genetic diseases: a feasibility study

scientific article published in January 2003

Evaluation of the Unified Medical Language System as a Medical Knowledge Source ⬇️

scientific article published on January 1, 1998

Evidence in pharmacovigilance: extracting adverse drug reactions articles from MEDLINE to link them to case databases.

scientific article

Evolving from standard vocabularies to formal ontology for an information system dedicated to organ transplantation

scientific article published on January 2004

Experiments in cross-language medical information retrieval using a mixing translation module

article

Exploring and visualizing multidimensional data in translational research platforms.

scientific article

Filtering Entities to Optimize Identification of Adverse Drug Reaction From Social Media: How Can the Number of Words Between Entities in the Messages Help?

scientific article published on 22 June 2017

Finding patients using similarity measures in a rare diseases-oriented clinical data warehouse: Dr. Warehouse and the needle in the needle stack

scientific article

GO2PUB: Querying PubMed with semantic expansion of gene ontology terms

scientific article published on 07 September 2012

Grading glioma tumors using OWL-DL and NCI Thesaurus

scientific article published on 11 October 2007

Improving a full-text search engine: the importance of negation detection and family history context to identify cases in a biomedical data warehouse

scientific article

Integrating Heterogeneous Biomedical Data for Cancer Research: the CARPEM infrastructure

scientific article

Integrating biological pathways in disease ontologies

scientific article published on January 2007

Integrating clinical, gene expression, protein expression and preanalytical data for in silico cancer research

scientific article

Integration of electronic resources and communication technologies during Clinical Reasoning Learning sessions.

scientific article published in January 2002

International Electronic Health Record-Derived COVID-19 Clinical Course Profiles: The 4CE Consortium

scientific article published on 18 April 2020

International electronic health record-derived COVID-19 clinical course profiles: the 4CE consortium

scientific article published on 19 August 2020

Investigating subsumption in SNOMED CT: an exploration into large description logic-based biomedical terminologies

scientific article

Iron-related transcriptomic variations in Caco-2 cells: in silico perspectives

scientific article published on 11 January 2008

Issues in integrating epidemiology and research information in oncology: experience with ICD-O3 and the NCI Thesaurus.

scientific article published on 11 October 2007

Issues in the classification of disease instances with ontologies.

scientific article published on January 2005

Knowledge acquisition from the UMLS sources: application to the description of surgical procedures.

scientific article published on January 1995

Knowledge acquisition to qualify Unified Medical Language System interconceptual relationships.

scientific article published on January 2000

Knowledge representation in orthopedics: from conceptual modeling to nomenclatures using 'Orthonav'.

scientific article published in January 1995

Labeling for Big Data in radiation oncology: The Radiation Oncology Structures ontology

scientific article published on 19 January 2018

Leveraging the EHR4CR platform to support patient inclusion in academic studies: challenges and lessons learned

scientific article

Looking for Anemia (and Other Disorders) in SNOMED CT: Comparison of Three Approaches and Practical Implications.

scientific article

MRI image artifact ontology: a proposed method for improved recognition

scientific article

Mapping BFO and DOLCE.

scientific article published on January 2010

Mapping data elements to terminological resources for integrating biomedical data sources

scientific article

Mapping the UMLS Semantic Network into general ontologies.

scientific article

Medical Informatics Training and Research at Rennes University School of Medicine

scientific article published on January 1998

Mining Adverse Drug Reactions in Social Media with Named Entity Recognition and Semantic Methods

scientific article published in January 2017

Modelling a decision-support system for oncology using rule-based and case-based reasoning methodologies.

scientific article

Modelling dependencies between relations to ensure consistency of a cerebral cortex anatomy knowledge base

scientific article published in January 2003

Modelling of a case-based retrieval system for oncology.

scientific article published on January 2003

Natural language processing of radiology reports for the detection of thromboembolic diseases and clinically relevant incidental findings

scientific article

Non-lexical approaches to identifying associative relations in the gene ontology.

scientific article

OWL model of clinical trial eligibility criteria compatible with partially-known information

scientific article (publication date: 13 September 2013)

Ontology and medical diagnosis

scientific article published on March 2012

Partnering with patients in translational oncology research: ethical approach

scientific article published on 08 April 2017

Personalized and automated remote monitoring of atrial fibrillation.

scientific article published on 20 October 2015

Phenome-wide association studies on a quantitative trait: application to TPMT enzyme activity and thiopurine therapy in pharmacogenomics

scientific article (publication date: 2013)

Problem-based learning in medical informatics for undergraduate medical students: an experiment in two medical schools

scientific article published on 2 September 2005

Proposal for a European Public Health Research Infrastructure for Sharing of health and Medical administrative data (PHRIMA).

scientific article

Remote Monitoring of Cardiac Implantable Devices: Ontology Driven Classification of the Alerts

scientific article published on January 2016

Representation of roles in biomedical ontologies: a case study in functional genomics.

scientific article

Reviewing 741 patients records in two hours with FASTVISU.

scientific article published on 5 November 2015

Sex differences in antihypertensive treatment in France among 17 856 patients in a tertiary hypertension unit

scientific article

Sharing medical data for patient path analysis with data mining method.

scientific article

The Adverse Drug Reactions From Patient Reports in Social Media Project: Protocol for an Evaluation Against a Gold Standard

scientific article published on 07 May 2019

The Diagnosis-Wide Landscape of Hospital-Acquired AKI.

scientific article published on 11 May 2017

The French Virtual Medical University.

scientific article published on January 2000

The Georges Pompidou University Hospital Clinical Data Warehouse: A 8-years follow-up experience

scientific article

The Ontology-Epistemology Divide: A Case Study in Medical Terminology

The directory of French biological resources centres/biobanks

scientific article published on 21 October 2011

Toward a unified representation of findings in clinical radiology.

scientific article published on January 2005

Towards a sharable numeric and symbolic knowledge base on cerebral cortex anatomy: lessons learned from a prototype.

scientific article published on January 2002

Towards the automatic generation of biomedical sources schema.

scientific article published on January 2004

Translational research platforms integrating clinical and omics data: a review of publicly available solutions

scientific article

Two approaches to integrating phenotype and clinical information

scientific article

UMLF: a Unified Medical Lexicon for French.

scientific article published on January 2003

UMLF: a unified medical lexicon for French

article

Using Literature-Based Discovery to Explain Adverse Drug Effects

scientific article

Using Semantic Web Technologies for Clinical Trial Recruitment

scientific article published in ISWC 2010

Using WordNet to improve the mapping of data elements to UMLS for data sources integration.

scientific article

Using regular expressions to extract information on pacemaker implantation procedures from clinical reports.

scientific article

Web Ontology Language Requirements w.r.t Expressiveness of Taxonomy and Axioms in Medicine

scientific article published in ISWC 2003

[Artificial intelligence applied to radiation oncology].

scientific article published on 19 April 2017

[Vertebral trabecular network analysis on CT images]

scientific article published on 01 June 2005

eSource for clinical trials: Implementation and evaluation of a standards-based approach in a real world trial

scientific article

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