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List of works by Thomas E Gorochowski

A Minimal Model of Ribosome Allocation Dynamics Captures Trade-offs in Expression between Endogenous and Synthetic Genes.

scientific article published on 25 April 2016

A standard-enabled workflow for synthetic biology

scientific article published on June 2017

Absolute quantification of translational regulation and burden using combined sequencing approaches

scientific article published on 03 May 2019

Advances in engineering CRISPR-Cas9 as a molecular Swiss Army knife

scientific article published on 24 October 2020

Agent-based modelling in synthetic biology

scientific article published on November 2016

BSim: an agent-based tool for modeling bacterial populations in systems and synthetic biology

scientific article

Beyond contact-based transmission networks: the role of spatial coincidence

scientific article

Communicating Structure and Function in Synthetic Biology Diagrams

scientific article published on 05 August 2019

Computational modeling and analysis of hippocampal-prefrontal information coding during a spatial decision-making task.

scientific article published on 3 March 2014

DNAplotlib: programmable visualization of genetic designs and associated data.

scientific article

Designing efficient translation

scientific article published on 11 October 2018

Evolving enhanced topologies for the synchronization of dynamical complex networks

scientific article published on 21 May 2010

Genetic circuit characterization and debugging using RNA-seq

scientific article published on 9 November 2017

Massively parallel characterization of engineered transcript isoforms using direct RNA sequencing

scientific article published on 21 January 2022

Memory and Combinatorial Logic Based on DNA Inversions: Dynamics and Evolutionary Stability

scientific article published on 9 November 2015

Organization of feed-forward loop motifs reveals architectural principles in natural and engineered networks.

scientific article published on 28 March 2018

Pathways to cellular supremacy in biocomputing

scientific article published on 20 November 2019

Precision design of stable genetic circuits carried in highly-insulated E. coli genomic landing pads

scientific article published on 01 August 2020

SBOL Visual 2 Ontology

scientific article published on 08 April 2020

Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022

scientific article published in March 2023

Specifications of standards in systems and synthetic biology: status, developments, and tools in 2024

Synthetic Biology Open Language (SBOL) Version 2.3.

scientific article published on 13 June 2019

Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0.

scientific article published on 17 March 2018

Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1.

scientific article published on 13 June 2019

Synthetic biology open language (SBOL) version 3.0.0.

scientific article published on 25 June 2020

Synthetic biology open language visual (SBOL visual) version 2.2.

scientific article published on 10 June 2020

Ten simple rules for managing laboratory information

scientific article published on 7 December 2023

Towards the fully automated monitoring of ecological communities

scientific article published in 2022

Trade-offs between tRNA abundance and mRNA secondary structure support smoothing of translation elongation rate.

scientific article published on 12 March 2015

Tunable genetic devices through simultaneous control of transcription and translation

scientific article published on 29 April 2020

Using aging to visually uncover evolutionary processes on networks.

scientific article published in August 2012

Using synthetic biological parts and microbioreactors to explore the protein expression characteristics of Escherichia coli.

scientific article

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