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List of works by Manas Kumar Mondal

Conformational selection underpins recognition of multiple DNA sequences by proteins and consequent functional actions

scientific article published on 18 July 2016

Contribution of phenylalanine side chain intercalation to the TATA-box binding protein-DNA interaction: molecular dynamics and dispersion-corrected density functional theory studies

scientific article published on 30 October 2014

Hybrid simulation approach incorporating microscopic interaction along with rigid body degrees of freedom for stacking between base pairs

scientific article published on 24 November 2015

Molecular dynamics simulations on interaction between bacterial proteins: Implication on pathogenic activities.

scientific article published on 18 December 2017

Role of indirect readout mechanism in TATA box binding protein-DNA interaction

scientific article published on 10 January 2015

Specific DNA sequences allosterically enhance protein-protein interaction in a transcription factor through modulation of protein dynamics: implications for specificity of gene regulation

scientific article published on 26 May 2017

Stacking geometry for non-canonical G:U wobble base pair containing dinucleotide sequences in RNA: dispersion-corrected DFT-D study.

scientific article published on June 2015

Structural properties and influence of solvent on the stability of telomeric four-stranded i-motif DNA

scientific article published on 01 October 2019

The role of conformational fluctuations of protein towards methylation in DNA by cytosine-5-Methyltransferase

scientific article published on 16 November 2018

Unnatural cytosine bases recognized as thymines by DNA polymerases via the formation of the Watson-Crick geometry

scientific article published on 05 December 2018

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