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List of works by Wenfei Li

Activation Pathways and Free Energy Landscapes of the SARS-CoV-2 Spike Protein

scientific article published on 02 September 2021

All-atom replica exchange molecular simulation of protein BBL.

scientific article published in August 2008

An ester bond underlies the mechanical strength of a pathogen surface protein

scientific article published on 23 August 2021

Binding of Copper Ions with Octapeptide Region in Prion Protein: Simulations with Charge Transfer Model

scientific article published on 18 June 2019

CafeMol: A Coarse-Grained Biomolecular Simulator for Simulating Proteins at Work

scientific article published on 19 May 2011

Characterizing protein energy landscape by self-learning multiscale simulations: application to a designed β-hairpin

scientific article published on November 2010

Consequences of Energetic Frustration on the Ligand-Coupled Folding/Dimerization Dynamics of Allosteric Protein S100A12.

scientific article

Consequences of Hydrophobic Nanotube Binding on the Functional Dynamics of Signaling Protein Calmodulin

scientific article published on 18 June 2019

Correlation of reorientational jumps of water molecules in bulk water.

scientific article

Effects of solvents on the intrinsic propensity of peptide backbone conformations ⬇️

scientific article published on October 28, 2011

Effects of zinc binding on the conformational distribution of the amyloid-beta peptide based on molecular dynamics simulations.

scientific article published on 15 November 2007

Energy landscape and multiroute folding of topologically complex proteins adenylate kinase and 2ouf-knot

scientific article

Energy landscape views for interplays among folding, binding, and allostery of calmodulin domains.

scientific article

Folding behavior of ribosomal protein S6 studied by modified Gō-like model.

scientific article published on 28 March 2007

Folding of a small RNA hairpin based on simulation with replica exchange molecular dynamics.

scientific article

Frustration, specific sequence dependence, and nonlinearity in large-amplitude fluctuations of allosteric proteins ⬇️

scientific article published on February 9, 2011

Localized frustration and binding-induced conformational change in recognition of 5S RNA by TFIIIA zinc finger.

scientific article published on 3 December 2013

Metal-coupled folding of Cys2His2 zinc-finger.

scientific article published on 29 December 2007

Modeling Structural Dynamics of Biomolecular Complexes by Coarse-Grained Molecular Simulations.

scientific article

Molecular simulations of metal-coupled protein folding

scientific article

Multiscale methods for protein folding simulations

scientific article published on 29 April 2010

Principles Governing Catalytic Activity of Self-Assembled Short Peptides

scientific article published on 28 December 2018

Protein folding simulations: from coarse-grained model to all-atom model.

scientific article published on June 2009

Role of water-bridged interactions in metal ion coupled protein allostery

scientific article published on 02 June 2022

Root Hair Apex is the Key Site for Symplastic Delivery of Graphene into Plants

scientific article published in 2022

Single-molecule force spectroscopy reveals force-enhanced binding of calcium ions by gelsolin

scientific article

Structural-profiling of low molecular weight RNAs by nanopore trapping/translocation using Mycobacterium smegmatis porin A

scientific article published on 07 June 2021

Template induced conformational change of amyloid-β monomer.

scientific article published on 18 June 2012

The role of gelsolin domain 3 in familial amyloidosis (Finnish type)

scientific article published on 26 June 2019

Understanding protein folding cooperativity based on topological consideration.

scientific article

Understanding the folding and stability of a zinc finger-based full sequence design protein with replica exchange molecular dynamics simulations.

scientific article published in May 2007

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