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List of works by Nadine Ziemert

A community resource for paired genomic and metabolomic data mining

scientific article published in 2021

A rapid and efficient strategy to identify and recover biosynthetic gene clusters from soil metagenomes

scientific article published on 18 April 2022

ARTS 2.0: feature updates and expansion of the Antibiotic Resistant Target Seeker for comparative genome mining

scientific article published on 19 May 2020

ARTS-DB: a database for antibiotic resistant targets

scientific article published on 01 January 2022

An Integrated Metabolomic and Genomic Mining Workflow To Uncover the Biosynthetic Potential of Bacteria

scientific article (publication date: 3 May 2016)

Analysis of the Genome and Metabolome of Marine Myxobacteria Reveals High Potential for Biosynthesis of Novel Specialized Metabolites

scientific article published in Scientific Reports

Antibiotic drug discovery.

scientific article

Applied evolution: phylogeny-based approaches in natural products research

scientific article published on 02 September 2019

Artificial intelligence for natural product drug discovery ⬇️

scientific article from 2023

Assessing the Efficiency of Cultivation Techniques To Recover Natural Product Biosynthetic Gene Populations from Sediment

article

Author Correction: Compendium of specialized metabolite biosynthetic diversity encoded in bacterial genomes

correction of a scholarly article

AutoMLST: an automated web server for generating multi-locus species trees highlighting natural product potential

scientific article published on 01 July 2019

Challenges and triumphs to genomics-based natural product discovery

scientific article published on 09 October 2013

Comparative Genomics and Metabolomics in the Genus Nocardia

scientific article published on 02 June 2020

Comparative genomics reveals phylogenetic distribution patterns of secondary metabolites in Amycolatopsis species.

scientific article

Compendium of specialized metabolite biosynthetic diversity encoded in bacterial genomes

scientific article published in 2022

Direct capture and heterologous expression of Salinispora natural product genes for the biosynthesis of enterocin.

scientific article published on 10 November 2014

Discovering cryptic natural products by substrate manipulation

scholarly article

Diversity and evolution of secondary metabolism in the marine actinomycete genus Salinispora

scientific article published on 10 March 2014

Exploiting the natural diversity of microviridin gene clusters for discovery of novel tricyclic depsipeptides ⬇️

scientific article

Function-related replacement of bacterial siderophore pathways. ⬇️

scientific article published on 15 August 2017

Genomic insights into specialized metabolism in the marine actinomycete Salinispora.

scientific article

Glycogenomics as a mass spectrometry-guided genome-mining method for microbial glycosylated molecules ⬇️

scientific article

Highly plastic genome of Microcystis aeruginosa PCC 7806, a ubiquitous toxic freshwater cyanobacterium

scientific article (publication date: 5 June 2008)

Identification of a novel aminopolycarboxylic acid siderophore gene cluster encoding the biosynthesis of ethylenediaminesuccinic acid hydroxyarginine (EDHA).

scientific article published on 18 April 2018

Kistamicin biosynthesis reveals the biosynthetic requirements for production of highly crosslinked glycopeptide antibiotics

scientific article published on 13 June 2019

Leader peptide and a membrane protein scaffold guide the biosynthesis of the tricyclic peptide microviridin

scientific article published in November 2011

MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration

scientific article published on 9 December 2024

Metagenomic Sequencing of Multiple Soil Horizons and Sites in Close Vicinity Revealed Novel Secondary Metabolite Diversity

scientific article published on 12 October 2021

Microcyclamide biosynthesis in two strains of Microcystis aeruginosa: from structure to genes and vice versa ⬇️

scientific article

Minimum Information about a Biosynthetic Gene cluster.

scientific article published on August 2015

Mining Bacterial Genomes for Secondary Metabolite Gene Clusters.

scientific article published on January 2017

Mining Indonesian Microbial Biodiversity for Novel Natural Compounds by a Combined Genome Mining and Molecular Networking Approach

scientific article published in 2021

Modular Fragment Synthesis and Bioinformatic Analysis Propose a Revised Vancoresmycin Stereoconfiguration

scientific article published on 24 December 2020

Molecular networking and pattern-based genome mining improves discovery of biosynthetic gene clusters and their products from Salinispora species ⬇️

scientific article published on 9 April 2015

New Nocobactin Derivatives with Antimuscarinic Activity, Terpenibactins A-C, Revealed by Genome Mining of Nocardia terpenica IFM 0406

scientific article published on 20 March 2020

Phylogenetic approaches to natural product structure prediction

scientific article published in January 2012

Recovery of the Peptidoglycan Turnover Product Released by the Autolysin Atl in Involves the Phosphotransferase System Transporter MurP and the Novel 6-phospho--acetylmuramidase MupG

scientific article published in 2018

Ribosomal synthesis of tricyclic depsipeptides in bloom-forming cyanobacteria

scientific article

SYN-View: A Phylogeny-Based Synteny Exploration Tool for the Identification of Gene Clusters Linked to Antibiotic Resistance

scientific article published on 31 December 2020

Salinipyrone and Pacificanone Are Biosynthetic By-products of the Rosamicin Polyketide Synthase.

scientific article published on 15 May 2015

Sequencing rare marine actinomycete genomes reveals high density of unique natural product biosynthetic gene clusters.

scientific article published on 27 October 2016

Structures of a non-ribosomal peptide synthetase condensation domain suggest the basis of substrate selectivity

scientific article published on 04 May 2021

The ADEP Biosynthetic Gene Cluster in Streptomyces hawaiiensis NRRL 15010 Reveals an Accessory clpP Gene as a Novel Antibiotic Resistance Factor ⬇️

scientific article published on 01 October 2019

The Antibiotic Resistant Target Seeker (ARTS), an exploration engine for antibiotic cluster prioritization and novel drug target discovery

scientific article published on 2 May 2017

The confluence of big data and evolutionary genome mining for the discovery of natural products

scientific article published on 18 August 2021

The evolution of genome mining in microbes - a review.

scientific article

The genus as a model microorganism for bioactive natural product discovery

scientific article published on 27 May 2020

The natural product domain seeker NaPDoS: a phylogeny based bioinformatic tool to classify secondary metabolite gene diversity

scientific article

antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline

scientific article published on 01 July 2019

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