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List of works by Steven Jones

'Inductive' charges on atoms in proteins: comparative docking with the extended steroid benchmark set and discovery of a novel SHBG ligand.

scientific article published in November 2005

A BAC clone fingerprinting approach to the detection of human genome rearrangements ⬇️

scientific article

A Computational Approach to Finding Novel Targets for Existing Drugs ⬇️

scientific article published on September 1, 2011

A Hematogenous Route for Medulloblastoma Leptomeningeal Metastases.

scientific article published in February 2018

A Notch-dependent transcriptional hierarchy promotes mesenchymal transdifferentiation in the cardiac cushion.

scientific article

A Scalable Strand-Specific Protocol Enabling Full-Length Total RNA Sequencing From Single Cells

scientific article published on 03 June 2021

A clinically validated diagnostic second-generation sequencing assay for detection of hereditary BRCA1 and BRCA2 mutations.

scientific article

A collaborative filtering based approach to biomedical knowledge discovery

scientific article published on 26 September 2017

A functional genomic analysis of cell morphology using RNA interference

scientific article

A modified polymerase chain reaction-long serial analysis of gene expression protocol identifies novel transcripts in human CD34+ bone marrow cells

scientific article

A mouse atlas of gene expression: large-scale digital gene-expression profiles from precisely defined developing C57BL/6J mouse tissues and cells.

scientific article published on 13 December 2005

A new frontier in personalized cancer therapy: mapping molecular changes.

scientific article published on July 2011

A new quinoline-based chemical probe inhibits the autophagy-related cysteine protease ATG4B

scientific article published in Scientific Reports

A novel mutation in EED associated with overgrowth

scientific article

A novel small-molecule inhibitor of the avian influenza H5N1 virus determined through computational screening against the neuraminidase.

scientific article

A pan-cancer analysis of alternative splicing events reveals novel tumor-associated splice variants of matriptase.

scientific article

A physical map of the highly heterozygous Populus genome: integration with the genome sequence and genetic map and analysis of haplotype variation

article

A physical map of the human genome

scientific article

A physical map of the mouse genome

scientific article

A platform for oncogenomic reporting and interpretation

scientific article published on 09 February 2022

A set of BAC clones spanning the human genome

scientific article published on 9 July 2004

A somatic reference standard for cancer genome sequencing

scientific article

A-to-I miR-378a-3p editing can prevent melanoma progression via regulation of PARVA expression

scientific article published on 31 January 2018

ABySS: a parallel assembler for short read sequence data

scientific article (publication date: June 2009)

ACE 2 Coding Variants: A Potential X-linked Risk Factor for COVID-19 Disease

scientific article published on 15 April 2020

ALEA: a toolbox for allele-specific epigenomics analysis

scientific article published on 21 January 2014

ATR-X syndrome protein targets tandem repeats and influences allele-specific expression in a size-dependent manner.

scientific article published in October 2010

Ab initio parameterization of YFF1, a universal force field for drug-design applications

scientific article published on 12 May 2011

Allelic ratios and the mutational landscape reveal biologically significant heterozygous SNVs

scientific article published on 20 January 2012

Altered Gene Expression along the Glycolysis-Cholesterol Synthesis Axis Is Associated with Outcome in Pancreatic Cancer

scientific article published on 03 September 2019

An approach to large scale identification of non-obvious structural similarities between proteins

scientific article

Analysis of FOXO1 mutations in diffuse large B-cell lymphoma

scientific article published on 4 March 2013

Analysis of Normal Human Mammary Epigenomes Reveals Cell-Specific Active Enhancer States and Associated Transcription Factor Networks

scientific article published in November 2016

Analysis of Ugandan cervical carcinomas identifies human papillomavirus clade-specific epigenome and transcriptome landscapes

scientific article published on 03 August 2020

Analysis of long-lived C. elegans daf-2 mutants using serial analysis of gene expression

scientific article published on 18 April 2005

Analysis of the genome and transcriptome of Cryptococcus neoformans var. grubii reveals complex RNA expression and microevolution leading to virulence attenuation

scientific article

Annotating the regulatory genome.

scientific article published on January 2010

Application of genomics to identify therapeutic targets in recurrent pediatric papillary thyroid carcinoma.

scientific article published on 2 April 2018

Assembling millions of short DNA sequences using SSAKE.

scientific article published on 8 December 2006

Assembly of the Complete Sitka Spruce Chloroplast Genome Using 10X Genomics' GemCode Sequencing Data.

scientific article

Assessment and integration of publicly available SAGE, cDNA microarray, and oligonucleotide microarray expression data for global coexpression analyses.

scientific article

Assessment of SAGE in Transcript Identification ⬇️

scientific article published on May 12, 2003

Author Correction: Transcription phenotypes of pancreatic cancer are driven by genomic events during tumor evolution

scientific article published on 01 April 2020

Beta-catenin expression is prognostic of improved non–small cell lung cancer survival

article published in 2012

BreakFusion: targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data

scientific article

Bromodomain-containing protein 4 (BRD4) regulates RNA polymerase II serine 2 phosphorylation in human CD4+ T cells

scientific article

CGMIM: automated text-mining of Online Mendelian Inheritance in Man (OMIM) to identify genetically-associated cancers and candidate genes

scientific article

CancerMine: a literature-mined resource for drivers, oncogenes and tumor suppressors in cancer

scientific article published on 20 May 2019

Cell cycle regulators show diagnostic and prognostic utility for differentiated thyroid cancer

scientific article

ChAsE: chromatin analysis and exploration tool.

scientific article published on 4 July 2016

Characterization of the human thyroid epigenome.

scientific article published on 14 August 2017

Circos: an information aesthetic for comparative genomics

scientific article (publication date: September 2009)

Clinical utility of type 1 growth factor receptor expression in colon cancer

scientific article published in May 2008

Clonal expansion and epigenetic reprogramming following deletion or amplification of mutant IDH1.

scientific article published on 15 September 2017

Combined serial analysis of gene expression and transcription factor binding site prediction identifies novel-candidate-target genes of Nr2e1 in neocortex development

scientific article published on 24 July 2015

Complete Chloroplast Genome Sequence of a White Spruce (Picea glauca, Genotype WS77111) from Eastern Canada

scientific article published on 06 June 2019

Complete Chloroplast Genome Sequence of an Engelmann Spruce (Picea engelmannii, Genotype Se404-851) from Western Canada

scientific article published on 13 June 2019

Complete Genome Sequence of Mycobacterium chimaera SJ42, a Nonoutbreak Strain from an Immunocompromised Patient with Pulmonary Disease

scientific article published on 14 September 2017

Complete genomic landscape of a recurring sporadic parathyroid carcinoma ⬇️

scientific article published on July 1, 2013

Complex Autism Spectrum Disorder with Epilepsy, Strabismus and Self-Injurious Behaviors in a Patient with a De Novo Heterozygous <i>POLR2A</i> Variant

scientific article published on 07 March 2022

Compound heterozygous TRPV4 mutations in two siblings with a complex phenotype including severe intellectual disability and neuropathy

scientific article published on 12 September 2017

Comprehensive genomic profiling of glioblastoma tumors, BTICs, and xenografts reveals stability and adaptation to growth environments

scientific article published on 30 August 2019

Comprehensive whole genome sequence analyses yields novel genetic and structural insights for Intellectual Disability.

scientific article

Coordinated expression of galectin-3 and caveolin-1 in thyroid cancer.

scientific article

Cross-cancer profiling of molecular alterations within the human autophagy interaction network

scientific article published on 24 July 2015

Cryptococcus neoformans gene expression during experimental cryptococcal meningitis

scientific article

DNA methylation and SETDB1/H3K9me3 regulate predominantly distinct sets of genes, retroelements, and chimeric transcripts in mESCs

scientific article published on June 2011

De Novo Sequencing, Assembly, and Annotation of Four Threespine Stickleback Genomes Based on Microfluidic Partitioned DNA Libraries

scientific article published on 03 June 2019

De novo assembly and analysis of RNA-seq data.

scientific article

Defects in the IFT-B component IFT172 cause Jeune and Mainzer-Saldino syndromes in humans

scientific article

Delving into Early Onset Pancreatic Ductal Adenocarcinoma: How Does Age Fit In?

scientific article published on 21 September 2020

Detection and management of hypothyroidism following thyroid lobectomy: evaluation of a clinical algorithm

scientific article published on 10 March 2011

Determinants of Tc-99m sestamibi SPECT scan sensitivity in primary hyperparathyroidism

article

Diagnostic utility of galectin-3 in thyroid cancer.

scientific article

Diagnostic value of next-generation sequencing in an unusual sphenoid tumor.

scientific article published on 7 May 2014

Differential roles of RET isoforms in medullary and papillary thyroid carcinomas.

scientific article published on 21 November 2016

Discovery of novel alternatively spliced C. elegans transcripts by computational analysis of SAGE data

scientific article

DiscoverySpace: an interactive data analysis application

scientific article

Draft genome of the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major forest pest

scientific article

Drug repositioning for personalized medicine.

scientific article

Dynamic remodeling of individual nucleosomes across a eukaryotic genome in response to transcriptional perturbation

scientific article

ELT-2 is the predominant transcription factor controlling differentiation and function of the C. elegans intestine, from embryo to adult.

scientific article

Effect of TERT and ATM on gene expression profiles in human fibroblasts.

scientific article

Endogenous retrovirus transcript levels are associated with immunogenic signatures in multiple metastatic cancer types

scientific article published on 09 June 2020

Epigenetic and transcriptional determinants of the human breast

scientific article

Establishing a Framework for the Clinical Translation of Germline Findings in Precision Oncology

scientific article published on 29 May 2020

Evaluation of protocols for rRNA depletion-based RNA sequencing of nanogram inputs of mammalian total RNA

scientific article published on 31 October 2019

Evaluation of type 1 growth factor receptor family expression in benign and malignant thyroid lesions

scientific article published on 01 May 2008

Evolution of gene structure in the conifer Picea glauca: a comparative analysis of the impact of intron size

scientific article

Evolutionary and Biomedical Insights from the Rhesus Macaque Genome

scientific article

Exome sequencing identifies a novel variant in ACTC1 associated with familial atrial septal defect.

scientific article published on 6 December 2013

Expression of Gp78/Autocrine Motility Factor Receptor and Endocytosis of Autocrine Motility Factor in Human Thyroid Cancer Cells

scientific article published on 17 June 2019

FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology

scientific article

Functional genomics of the cilium, a sensory organelle

scientific journal article

GA4GH: International policies and standards for data sharing across genomic research and healthcare

scientific article published on 10 November 2021

GPSM2 mutations cause the brain malformations and hearing loss in Chudley-McCullough syndrome

scientific article

Gene discovery for the bark beetle-vectored fungal tree pathogen Grosmannia clavigera.

scientific article

Gene expression profiling of oxidative stress response of C. elegans aging defective AMPK mutants using massively parallel transcriptome sequencing.

scientific article

Gene number in an invertebrate chordate, Ciona intestinalis

scientific article

Generation and annotation of lodgepole pine and oleoresin-induced expressed sequences from the blue-stain fungus Ophiostoma clavigerum, a Mountain Pine Beetle-associated pathogen

scientific article

Generation of ESTs in Vitis vinifera wine grape (Cabernet Sauvignon) and table grape (Muscat Hamburg) and discovery of new candidate genes with potential roles in berry development

scientific article

Generation of a wheat leaf rust, Puccinia triticina, EST database from stage-specific cDNA libraries

scientific article

Genes that may modulate longevity in C. elegans in both dauer larvae and long-lived daf-2 adults

scientific article

Genetic alterations activating kinase and cytokine receptor signaling in high-risk acute lymphoblastic leukemia

scientific article

Genetic basis of transcriptome differences between the founder strains of the rat HXB/BXH recombinant inbred panel.

scientific article published on 27 April 2012

Genetic counseling in direct-to-consumer exome sequencing: a case report.

scientific article

Genome and transcriptome biomarkers of response to immune checkpoint inhibitors in advanced solid tumours

scientific article published on 05 October 2020

Genome destabilizing mutator alleles drive specific mutational trajectories in Saccharomyces cerevisiae

scientific article published on 13 December 2013

Genome sequence of the Brown Norway rat yields insights into mammalian evolution

scientific article

Genome sequences of six Phytophthora species threatening forest ecosystems.

scientific article published on 3 October 2016

Genome variation in Cryptococcus gattii, an emerging pathogen of immunocompetent hosts.

scientific article

Genome-Enhanced Detection and Identification (GEDI) of plant pathogens.

scientific article published on 22 February 2018

Genome-Wide Profiles of Extra-cranial Malignant Rhabdoid Tumors Reveal Heterogeneity and Dysregulated Developmental Pathways.

scientific article published on March 2016

Genome-wide discovery of somatic coding and noncoding mutations in pediatric endemic and sporadic Burkitt lymphoma

scientific article published on 07 January 2019

Genome-wide microRNA and messenger RNA profiling in rodent liver development implicates mir302b and mir20a in repressing transforming growth factor-beta signaling.

scientific article

Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing

scientific article (publication date: August 2007)

Genomic Analysis of a Serotype 5 Streptococcus pneumoniae Outbreak in British Columbia, Canada, 2005-2009.

scientific article published on 14 April 2016

Genomic analysis of a rare human tumor

scientific article published on 23 July 2010

Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia

scientific article

Genomic characterization of a well-differentiated grade 3 pancreatic neuroendocrine tumor.

scientific article published on 3 June 2019

Genomic profiling of pelvic genital type leiomyosarcoma in a woman with a germline CHEK2:c.1100delC mutation and a concomitant diagnosis of metastatic invasive ductal breast carcinoma

scientific article published on 16 May 2017

Genomics of hybrid poplar (Populus trichocarpax deltoides) interacting with forest tent caterpillars (Malacosoma disstria): normalized and full-length cDNA libraries, expressed sequence tags, and a cDNA microarray for the study of [...]

scientific article published in April 2006

Glioma-derived IL-33 orchestrates an inflammatory brain tumor microenvironment that accelerates glioma progression

scientific article published on 05 October 2020

Global analysis of in vivo Foxa2-binding sites in mouse adult liver using massively parallel sequencing

scientific article published on 8 July 2008

Hemithyroidectomy is the preferred initial operative approach for an indeterminate fine needle aspiration biopsy diagnosis

scientific article

High quality SNP calling using Illumina data at shallow coverage.

scientific article

High-throughput in vivo analysis of gene expression in Caenorhabditis elegans

scientific article

Hippo signaling influences HNF4A and FOXA2 enhancer switching during hepatocyte differentiation

scientific article

Hive plots--rational approach to visualizing networks.

scientific article published on 9 December 2011

HoxA13 Regulates Phenotype Regionalization of Human Pregnant Myometrium.

scientific article published on 20 October 2015

Human variation database: an open-source database template for genomic discovery ⬇️

scientific article published on March 2, 2011

Hypermutation signature reveals a slippage and realignment model of translesion synthesis by Rev3 polymerase in cisplatin-treated yeast.

scientific article published on 21 February 2017

Identification and Analyses of Extra-Cranial and Cranial Rhabdoid Tumor Molecular Subgroups Reveal Tumors with Cytotoxic T Cell Infiltration

scientific article published on 07 November 2019

Identification and characterization of Hoxa9 binding sites in hematopoietic cells

scientific article

Identification by full-coverage array CGH of human DNA copy number increases relative to chimpanzee and gorilla.

scientific article

Identification of a putative Tdp1 inhibitor (CD00509) by in vitro and cell-based assays.

scientific article published on 12 August 2014

Identification of genes expressed in the hermaphrodite germ line of C. elegans using SAGE.

scientific article

Identification of novel lung genes in bronchial epithelium by serial analysis of gene expression

scientific article published on 29 June 2006

Identifying cancer mutation targets across thousands of samples: MuteProc, a high throughput mutation analysis pipeline.

scientific article published on 28 May 2013

Immunophenotyping of thyroid tumors identifies molecular markers altered during transformation of differentiated into anaplastic carcinoma

scientific article published in May 2011

Improved measures for evolutionary conservation that exploit taxonomy distances

scientific article published on 05 April 2019

Improved white spruce (Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism

scientific article published on 28 May 2015

Increasing quality, throughput and speed of sample preparation for strand-specific messenger RNA sequencing

scientific article

Incremental value and clinical impact of neck sonography for primary hyperparathyroidism: a risk-adjusted analysis

scientific article published on October 2013

Integrated Genomic and Functional microRNA Analysis Identifies miR-30-5p as a Tumor Suppressor and Potential Therapeutic Nanomedicine in Head and Neck Cancer

scientific article published on 05 February 2019

Integrated and sequence-ordered BAC- and YAC-based physical maps for the rat genome

scientific article published in April 2004

Integrative genomic analysis of ghost cell odontogenic carcinoma

scientific article published on 11 July 2015

Integrative genomic analysis of matched primary and metastatic pediatric osteosarcoma

scientific article published on 28 August 2019

Iron-regulated transcription and capsule formation in the fungal pathogen Cryptococcus neoformans

scientific article

IslandPath: aiding detection of genomic islands in prokaryotes

scientific article published in February 2003

JAGuaR: junction alignments to genome for RNA-seq reads

scientific article

LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads.

scientific article published on 4 August 2015

Large-scale production of SAGE libraries from microdissected tissues, flow-sorted cells, and cell lines

scientific article

Large-scale profiling of microRNAs for The Cancer Genome Atlas.

scientific article published on 13 August 2015

Lessons learned from the application of whole-genome analysis to the treatment of patients with advanced cancers

scientific article published on October 2015

LongSAGE profiling of nine human embryonic stem cell lines.

scientific article published on January 2007

Loss of the Notch effector RBPJ promotes tumorigenesis

scientific article

MEG3 long noncoding RNA regulates the TGF-β pathway genes through formation of RNA-DNA triplex structures.

scientific article published on 24 July 2015

MEN1 mutations in Hürthle cell (oncocytic) thyroid carcinoma

scientific article

MHC class II transactivator CIITA is a recurrent gene fusion partner in lymphoid cancers

scientific article

Management of PET diagnosed thyroid incidentalomas in British Columbia Canada: Critical importance of the PET report

scientific article published on 24 March 2017

Mating factor linkage and genome evolution in basidiomycetous pathogens of cereals

scientific article published in 2006

Megabase-scale methylation phasing using nanopore long reads and NanoMethPhase

scientific article published on 22 February 2021

Meta-analysis and meta-review of thyroid cancer gene expression profiling studies identifies important diagnostic biomarkers.

scientific article published on November 2006

Modern drug design: the implication of using artificial neuronal networks and multiple molecular dynamic simulations.

scientific article published on 13 November 2017

Molecular characterisation of metastatic pancreatic neuroendocrine tumours (PNETs) using whole genome and transcriptome sequencing.

scientific article published in November 2017

Molecular etiology of an indolent lymphoproliferative disorder determined by whole-genome sequencing

scientific article published on March 2016

Molecular phenotyping of thyroid tumors identifies a marker panel for differentiated thyroid cancer diagnosis

scientific article published on 9 July 2008

Mutation ofFOXL2in Granulosa-Cell Tumors of the Ovary

scientific article published on 10 June 2009

Mutational analysis reveals the origin and therapy-driven evolution of recurrent glioma

scientific article

Mutational and structural analysis of diffuse large B-cell lymphoma using whole-genome sequencing

scientific article published on 22 May 2013

Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution

scientific article (publication date: 8 October 2009)

Mutations in ILK, encoding integrin-linked kinase, are associated with arrhythmogenic cardiomyopathy

scientific article published on 15 February 2019

Mutations in SGOL1 cause a novel cohesinopathy affecting heart and gut rhythm

scientific article published on 5 October 2014

NRG1 Gene Fusions Are Recurrent, Clinically Actionable Gene Rearrangements in KRAS Wild-Type Pancreatic Ductal Adenocarcinoma

scientific article published on 08 May 2019

Next-generation tag sequencing for cancer gene expression profiling

scientific article

ORCA: a comprehensive bioinformatics container environment for education and research

scientific article published on 01 November 2019

ORegAnno 3.0: a community-driven resource for curated regulatory annotation

scientific article

ORegAnno: an open access database and curation system for literature-derived promoters, transcription factor binding sites and regulatory variation

scientific article

On the Deep Order-Preserving Submatrix Problem: A Best Effort Approach

Opposing Effects of CREBBP Mutations Govern the Phenotype of Rubinstein-Taybi Syndrome and Adult SHH Medulloblastoma

scientific article published on 9 March 2018

Organellar Genomes of White Spruce (Picea glauca): Assembly and Annotation

scientific article published on 8 December 2015

PICS: probabilistic inference for ChIP-seq

scientific article

Papillary thyroid carcinoma: prognostic significance of cancer presentation

Patient selection for a developmental therapeutics program using whole genome and Transcriptome analysis

scientific article published on 06 January 2020

Personalized oncogenomics in the management of gastrointestinal carcinomas-early experiences from a pilot study.

scientific article published on 21 December 2016

Personalized oncogenomics: clinical experience with malignant peritoneal mesothelioma using whole genome sequencing.

scientific article

Phosphorylated caveolin-1 regulates Rho/ROCK-dependent focal adhesion dynamics and tumor cell migration and invasion

scientific article published on October 2008

Physical maps for genome analysis of serotype A and D strains of the fungal pathogen Cryptococcus neoformans

scientific article published on September 2002

Poly‐gene fusion transcripts and chromothripsis in prostate cancer ⬇️

scientific article published on August 25, 2012

Population sequencing reveals clonal diversity and ancestral inbreeding in the grapevine cultivar Chardonnay

scientific article published on 20 November 2018

Precursor States of Brain Tumor Initiating Cell Lines Are Predictive of Survival in Xenografts and Associated with Glioblastoma Subtypes

scientific article

Prediction of genomic functional elements.

scientific article published on January 2006

Predictive utility of cyclo-oxygenase-2 expression by colon and rectal cancer

scientific article published on 12 March 2014

Profiling the HeLa S3 transcriptome using randomly primed cDNA and massively parallel short-read sequencing

scientific article

Prognostic significance of autocrine motility factor receptor expression by colorectal cancer and lymph node metastases

scientific article published on 14 March 2015

Putative BRAF activating fusion in a medullary thyroid cancer.

scientific article

Pyruvate Kinase Inhibits Proliferation during Postnatal Cerebellar Neurogenesis and Suppresses Medulloblastoma Formation.

scientific article published on 17 May 2017

RECQ-like helicases Sgs1 and BLM regulate R-loop-associated genome instability

scientific article published on 17 October 2017

RTNduals: an R/Bioconductor package for analysis of co-regulation and inference of dual regulons

scientific article published on 01 December 2019

RTNsurvival: an R/Bioconductor package for regulatory network survival analysis

scientific article published on 01 November 2019

Rare SUZ12 variants commonly cause an overgrowth phenotype

scientific article published on 17 November 2019

Reduced adenosine-to-inosine miR-455-5p editing promotes melanoma growth and metastasis

scientific article

Retrospective review using targeted deep sequencing reveals mutational differences between gastroesophageal junction and gastric carcinomas

scientific article

Retrotransposon-induced heterochromatin spreading in the mouse revealed by insertional polymorphisms

scientific article

Rise of the Machines: Advances in Deep Learning for Cancer Diagnosis

scientific article published on 28 February 2019

SNP discovery in black cottonwood (Populus trichocarpa) by population transcriptome resequencing.

scientific article published in March 2011

SOX9 modulates the expression of key transcription factors required for heart valve development.

scientific article published on 2 November 2015

Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome.

scientific article

Serial analysis of gene expression profiles of developmental stages in non-small cell lung carcinoma

scientific article

Serial analysis of gene expression reveals conserved links between protein kinase A, ribosome biogenesis, and phosphate metabolism in Ustilago maydis

scientific article published in December 2005

Small molecule epigenetic screen identifies novel EZH2 and HDAC inhibitors that target glioblastoma brain tumor-initiating cells.

scientific article published on 18 July 2016

Software for automated analysis of DNA fingerprinting gels.

scientific article

Somatic mosaicism for the p.His1047Arg mutation in PIK3CA in a girl with mesenteric lipomatosis.

scientific article

Somatic mutations altering EZH2 (Tyr641) in follicular and diffuse large B-cell lymphomas of germinal-center origin

scientific article

Sources of erroneous sequences and artifact chimeric reads in next generation sequencing of genomic DNA from formalin-fixed paraffin-embedded samples.

scientific article published in January 2019

Spark: a navigational paradigm for genomic data exploration

scientific article

Spruce giga‐genomes: structurally similar yet distinctive with differentially expanding gene families and rapidly evolving genes

scientific article published in 2022

Subtype-discordant pancreatic ductal adenocarcinoma tumors show intermediate clinical and molecular characteristics

scientific article published on 13 October 2020

System-level analysis of neuroblastoma tumor-initiating cells implicates AURKB as a novel drug target for neuroblastoma.

scientific article

THOR: targeted high-throughput ortholog reconstructor

scientific article published on 11 October 2006

Targeted CNS Delivery Using Human MiniPromoters and Demonstrated Compatibility with Adeno-Associated Viral Vectors.

scientific article published on January 2014

Temperature-regulated transcription in the pathogenic fungus Cryptococcus neoformans.

scientific article published in September 2002

Text-based phenotypic profiles incorporating biochemical phenotypes of inborn errors of metabolism improve phenomics-based diagnosis

scientific article published on 16 January 2018

Text-mining clinically relevant cancer biomarkers for curation into the CIViC database

scientific article published on 03 December 2019

The Atlantic salmon genome provides insights into rediploidization

scientific article

The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

scientific article

The Genome of the Beluga Whale (Delphinapterus leucas).

scientific article published on 11 December 2017

The Genome of the North American Brown Bear or Grizzly: Ursus arctos ssp. horribilis

article

The Genome of the Northern Sea Otter (Enhydra lutris kenyoni).

scientific article published on 11 December 2017

The Genome of the Steller Sea Lion (Eumetopias jubatus)

scientific article published on 26 June 2019

The clonal and mutational evolution spectrum of primary triple-negative breast cancers

scientific article (publication date: 4 April 2012)

The expression level of small non-coding RNAs derived from the first exon of protein-coding genes is predictive of cancer status.

scientific article published on 17 February 2014

The genome of the forest insect pest <i>Pissodes strobi</i> reveals genome expansion and evidence of a <i>Wolbachia</i> endosymbiont

scientific article published in 2022

The genome sequence of the spontaneously hypertensive rat: Analysis and functional significance

scientific article

The genomic and transcriptomic landscape of anaplastic thyroid cancer: implications for therapy.

scientific article published on 18 December 2015

The molecular signature and cis-regulatory architecture of a C. elegans gustatory neuron.

scientific article

The new paradigm of flow cell sequencing.

scientific article published on June 2008

The pink salmon genome: Uncovering the genomic consequences of a two-year life cycle

scientific article published on 17 December 2021

The transcriptional landscape of Shh medulloblastoma

scientific article published on 19 March 2021

Tigmint: correcting assembly errors using linked reads from large molecules

scientific article published on 26 October 2018

Transcription phenotypes of pancreatic cancer are driven by genomic events during tumor evolution

scientific article published on 13 January 2020

Transcriptome analysis of the normal human mammary cell commitment and differentiation process

scientific article

Transcriptome resources and functional characterization of monoterpene synthases for two host species of the mountain pine beetle, lodgepole pine (Pinus contorta) and jack pine (Pinus banksiana).

scientific article

Transferrin receptor 2 (TfR2) and HFE mutational analysis in non-C282Y iron overload: identification of a novel TfR2 mutation

scientific article

Tumor necrosis factor overcomes immune evasion in p53-mutant medulloblastoma

scientific article published on 18 May 2020

Tumor-associated macrophages and survival in classic Hodgkin's lymphoma

scientific article

Tumour-suppressor microRNAs regulate ovarian cancer cell physical properties and invasive behaviour.

scientific article

Twist1 transcriptional targets in the developing atrio-ventricular canal of the mouse

scientific article

Uncovering Clinically Relevant Gene Fusions with Integrated Genomic and Transcriptomic Profiling of Metastatic Cancers

scientific article published on 04 November 2020

VisRseq: R-based visual framework for analysis of sequencing data

scientific article

Whole genome duplication and enrichment of metal cation transporters revealed by de novo genome sequencing of extremely halotolerant black yeast Hortaea werneckii

scientific article published in 2013

Whole-genome and transcriptome profiling of a metastatic thyroid-like follicular renal cell carcinoma

scientific article published on 17 December 2018

Whole-genome profiling of mutagenesis in Caenorhabditis elegans

scientific article

Whole-genome sequencing and social-network analysis of a tuberculosis outbreak

scientific article (publication date: 24 February 2011)

akirinis required for diakinesis bivalent structure and synaptonemal complex disassembly at meiotic prophase I ⬇️

scientific article published on January 30, 2013

cSurvival: a web resource for biomarker interactions in cancer outcomes and in cell lines

scientific article published on 01 May 2022

miR-509-3p is clinically significant and strongly attenuates cellular migration and multi-cellular spheroids in ovarian cancer.

scientific article published on 27 March 2016

ntEdit: scalable genome sequence polishing

scientific article published on 01 November 2019

rAAV-compatible MiniPromoters for restricted expression in the brain and eye.

scientific article published on 10 May 2016

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