List of works - Sean M. Gibbons

454-sequencing reveals stochastic local reassembly and high disturbance tolerance within arbuscular mycorrhizal fungal communities

scientific article published in 2011

A communal catalogue reveals Earth's multiscale microbial diversity

scientific article published in November 2017

A library of human gut bacterial isolates paired with longitudinal multiomics data enables mechanistic microbiome research

scientific article published on 02 September 2019

Aquarium microbiome response to ninety-percent system water change: Clues to microbiome management

scientific article published on 28 May 2015

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

scientific article published on 01 September 2019

Baseline Gut Metagenomic Functional Gene Signature Associated with Variable Weight Loss Responses following a Healthy Lifestyle Intervention in Humans

scientific article published on 14 September 2021

Blood metabolome predicts gut microbiome α-diversity in humans

scientific article published on 02 September 2019

Characterization of the salivary microbiome in patients with pancreatic cancer

scientific article

Characterizing changes in soil bacterial community structure in response to short-term warming.

scientific article

Coarse graining the human gut microbiome

scientific article published in 2023

Correction for Vangay et al., “Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities”

scientific article published in 2021

Defining Microbiome Health through a Host Lens

article

Designing synbiotics for improved human health

scientific article published on 4 December 2017

Disturbance Regimes Predictably Alter Diversity in an Ecologically Complex Bacterial System.

scientific article

Ecological succession and viability of human-associated microbiota on restroom surfaces.

scientific article

Effects of diurnal variation of gut microbes and high-fat feeding on host circadian clock function and metabolism

scientific article published on 16 April 2015

Evidence for a persistent microbial seed bank throughout the global ocean

scientific article (publication date: 19 March 2013)

Gut microbiome pattern reflects healthy ageing and predicts survival in humans

scientific article published on 18 February 2021

Health and disease markers correlate with gut microbiome composition across thousands of people

scientific article published on 15 October 2020

Heavy metal tolerance genes alter cellular thermodynamics in Pseudomonas putida and river Pseudomonas spp. and influence amebal predation

scientific article published on 14 August 2013

Human and environmental impacts on river sediment microbial communities

scientific article (publication date: 2014)

Hyporheic microbial community development is a sensitive indicator of metal contamination

scientific article published in August 2009

Invasive Plants Rapidly Reshape Soil Properties in a Grassland Ecosystem. ⬇️

scientific article published on 07 March 2017

Investigating the impact of storage conditions on microbial community composition in soil samples

scientific article

Longitudinal analysis of microbial interaction between humans and the indoor environment

scientific article

Longitudinal analysis reveals transition barriers between dominant ecological states in the gut microbiome

scientific article published on 29 May 2020

MICOM: Metagenome-Scale Modeling To Infer Metabolic Interactions in the Gut Microbiota

scientific article published on 21 January 2020

Meta-analysis of gut microbiome studies identifies disease-specific and shared responses

scientific article

Metapopulation theory provides new insight into microbial biogeography

scientific article published on 20 February 2017

Microbial community ecology: Function over phylogeny

scientific article published on 04 January 2017

Microbial diversity--exploration of natural ecosystems and microbiomes

scientific article

Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities

scientific article published on 22 February 2021

Modeling microbial community structure and functional diversity across time and space

scientific article

Multi-omics Analysis of Periodontal Pocket Microbial Communities Pre- and Posttreatment.

scientific article

Non-responder phenotype reveals apparent microbiome-wide antibiotic tolerance in the murine gut

scientific article published on 09 March 2021

Rapid response of arbuscular mycorrhizal fungal communities to short-term fertilization in an alpine grassland on the Qinghai-Tibet Plateau

scientific article

Relative strengths of relationships between plant, microbial, and environmental parameters in heavy-metal contaminated floodplain soil

article

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

scientific article published on 01 August 2019

Severe plant invasions can increase mycorrhizal fungal abundance and diversity. ⬇️

scientific article

Spatial scale drives patterns in soil bacterial diversity.

scientific article published on 23 February 2016

Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences

scientific article

The Built Environment Is a Microbial Wasteland

scientific article published on March 2016

The role of macrobiota in structuring microbial communities along rocky shores

scientific article

The short-chain fatty acid receptor, FFA2, contributes to gestational glucose homeostasis

scientific article published on 22 September 2015

Two dynamic regimes in the human gut microbiome

scientific article

Understanding cultivar-specificity and soil determinants of the cannabis microbiome

scientific article

Use and abuse of correlation analyses in microbial ecology

scientific article published on 28 June 2019

Use of microcalorimetry to determine the costs and benefits to Pseudomonas putida strain KT2440 of harboring cadmium efflux genes.

scientific article

Whole-grain wheat consumption reduces inflammation in a randomized controlled trial on overweight and obese subjects with unhealthy dietary and lifestyle behaviors: role of polyphenols bound to cereal dietary fiber

scientific article published on 3 December 2014

Will different OTU delineation methods change interpretation of arbuscular mycorrhizal fungal community patterns?

scientific article published on 27 February 2014

List of works by Sean M. Gibbons

454-sequencing reveals stochastic local reassembly and high disturbance tolerance within arbuscular mycorrhizal fungal communities

A communal catalogue reveals Earth's multiscale microbial diversity

A library of human gut bacterial isolates paired with longitudinal multiomics data enables mechanistic microbiome research

Aquarium microbiome response to ninety-percent system water change: Clues to microbiome management

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Baseline Gut Metagenomic Functional Gene Signature Associated with Variable Weight Loss Responses following a Healthy Lifestyle Intervention in Humans

Blood metabolome predicts gut microbiome α-diversity in humans

Characterization of the salivary microbiome in patients with pancreatic cancer

Characterizing changes in soil bacterial community structure in response to short-term warming.

Coarse graining the human gut microbiome

Correction for Vangay et al., “Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities”

Defining Microbiome Health through a Host Lens

Designing synbiotics for improved human health

Disturbance Regimes Predictably Alter Diversity in an Ecologically Complex Bacterial System.

Ecological succession and viability of human-associated microbiota on restroom surfaces.

Effects of diurnal variation of gut microbes and high-fat feeding on host circadian clock function and metabolism

Evidence for a persistent microbial seed bank throughout the global ocean

Gut microbiome pattern reflects healthy ageing and predicts survival in humans

Health and disease markers correlate with gut microbiome composition across thousands of people

Heavy metal tolerance genes alter cellular thermodynamics in Pseudomonas putida and river Pseudomonas spp. and influence amebal predation

Human and environmental impacts on river sediment microbial communities

Hyporheic microbial community development is a sensitive indicator of metal contamination

Invasive Plants Rapidly Reshape Soil Properties in a Grassland Ecosystem. ⬇️

Investigating the impact of storage conditions on microbial community composition in soil samples

Longitudinal analysis of microbial interaction between humans and the indoor environment

Longitudinal analysis reveals transition barriers between dominant ecological states in the gut microbiome

MICOM: Metagenome-Scale Modeling To Infer Metabolic Interactions in the Gut Microbiota

Meta-analysis of gut microbiome studies identifies disease-specific and shared responses

Metapopulation theory provides new insight into microbial biogeography

Microbial community ecology: Function over phylogeny

Microbial diversity--exploration of natural ecosystems and microbiomes

Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities

Modeling microbial community structure and functional diversity across time and space

Multi-omics Analysis of Periodontal Pocket Microbial Communities Pre- and Posttreatment.

Non-responder phenotype reveals apparent microbiome-wide antibiotic tolerance in the murine gut

Rapid response of arbuscular mycorrhizal fungal communities to short-term fertilization in an alpine grassland on the Qinghai-Tibet Plateau

Relative strengths of relationships between plant, microbial, and environmental parameters in heavy-metal contaminated floodplain soil

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Severe plant invasions can increase mycorrhizal fungal abundance and diversity. ⬇️

Spatial scale drives patterns in soil bacterial diversity.

Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences

The Built Environment Is a Microbial Wasteland

The role of macrobiota in structuring microbial communities along rocky shores

The short-chain fatty acid receptor, FFA2, contributes to gestational glucose homeostasis

Two dynamic regimes in the human gut microbiome

Understanding cultivar-specificity and soil determinants of the cannabis microbiome

Use and abuse of correlation analyses in microbial ecology

Use of microcalorimetry to determine the costs and benefits to Pseudomonas putida strain KT2440 of harboring cadmium efflux genes.

Whole-grain wheat consumption reduces inflammation in a randomized controlled trial on overweight and obese subjects with unhealthy dietary and lifestyle behaviors: role of polyphenols bound to cereal dietary fiber

Will different OTU delineation methods change interpretation of arbuscular mycorrhizal fungal community patterns?