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List of works by Colleen Cavanaugh

16S rRNA phylogenetic analysis and quantification of Korarchaeota indigenous to the hot springs of Kamchatka, Russia

scientific article

16S rRNA phylogenetic investigation of the candidate division "Korarchaeota"

scientific article

A dual symbiosis shared by two mussel species, Bathymodiolus azoricus and Bathymodiolus puteoserpentis (Bivalvia: Mytilidae), from hydrothermal vents along the northern Mid-Atlantic Ridge.

scientific article

A simple method for quantification of uncultured microorganisms in the environment based on in vitro transcription of 16S rRNA.

scientific article

An inter-island comparison of Darwin's finches reveals the impact of habitat, host phylogeny, and island on the gut microbiome

scientific article published on 13 December 2019

Bacterial endosymbioses in Solemya (Mollusca: Bivalvia)--model systems for studies of symbiont-host adaptation

scientific article

Bias in template-to-product ratios in multitemplate PCR

scientific article

CO2 uptake and fixation by endosymbiotic chemoautotrophs from the bivalve Solemya velum

scientific article published on 8 December 2006

Characterization and expression of genes from the RubisCO gene cluster of the chemoautotrophic symbiont of Solemya velum: cbbLSQO.

scientific article

Characterization of chemoautotrophic bacterial symbionts in a gutless marine worm Oligochaeta, Annelida) by phylogenetic 16S rRNA sequence analysis and in situ hybridization

scientific article

Characterizing the plasticity of nitrogen metabolism by the host and symbionts of the hydrothermal vent chemoautotrophic symbioses Ridgeia piscesae

scientific article published on 18 November 2013

Chemosynthetic endosymbioses: adaptations to oxic-anoxic interfaces

scientific article

Comparative genomics of vesicomyid clam (Bivalvia: Mollusca) chemosynthetic symbionts

scientific article (publication date: 4 December 2008)

Complete genome sequence of Candidatus Ruthia magnifica

scientific article (publication date: 27 October 2010)

Consequences of nitrogen fertilization on soil methane consumption in a productive temperate deciduous forest

scientific article published on 12 January 2005

Correction: Longitudinal microbiome profiling reveals impermanence of probiotic bacteria in domestic pigeons

scientific article published on 23 July 2019

Diverse Legionella -like bacteria associated with testate amoebae of the genus Arcella (Arcellinida: Amoebozoa).

scientific article published on 14 February 2018

Diversity and heterogeneity of epibiotic bacterial communities on the marine nematode Eubostrichus dianae

scientific article

Dominance of one bacterial phylotype at a Mid-Atlantic Ridge hydrothermal vent site

scientific article

Dynamics of the microbiota in response to host infection

scientific article

Effects of long-term nitrogen fertilization on the uptake kinetics of atmospheric methane in temperate forest soils

scientific article published on 01 September 2004

Evidence for a core gut microbiota in the zebrafish.

scientific article

Evidence for homologous recombination in intracellular chemosynthetic clam symbionts

scientific article published on 16 March 2009

Evidence for horizontal transmission from multilocus phylogeny of deep-sea mussel (Mytilidae) symbionts

scientific article published on 20 February 2014

Exploring the protist microbiome: The diversity of bacterial communities associated with Arcella spp. (Tubulina: Amoebozoa)

scholarly article published in 2022

Free-living tube worm endosymbionts found at deep-sea vents

scientific article published on 11 April 2008

Genetic subdivision of chemosynthetic endosymbionts of Solemya velum along the Southern New England coast

scientific article published on 24 July 2009

Host phylogeny, diet, and habitat differentiate the gut microbiomes of Darwin's finches on Santa Cruz Island

scientific article published on 11 December 2019

Importance of Xanthobacter autotrophicus in toluene biodegradation within a contaminated stream

scientific article published in February 1999

Independent phylogenetic origins of methanotrophic and chemoautotrophic bacterial endosymbioses in marine bivalves

scientific article

Influence of form IA RubisCO and environmental dissolved inorganic carbon on the delta13C of the clam-chemoautotroph symbiosis Solemya velum

scientific article published in December 2004

Intracellular coexistence of methano- and thioautotrophic bacteria in a hydrothermal vent mussel

scientific article

Intragenomic variation and evolution of the internal transcribed spacer of the rRNA operon in bacteria

scientific article published on 12 June 2007

Intrahost Genetic Diversity of Bacterial Symbionts Exhibits Evidence of Mixed Infections and Recombinant Haplotypes

scientific article published on 18 August 2017

Isotope discrimination by form IC RubisCO from Ralstonia eutropha and Rhodobacter sphaeroides, metabolically versatile members of 'Proteobacteria' from aquatic and soil habitats

scientific article published on 21 November 2018

Isotopic discrimination and kinetic parameters of RubisCO from the marine bloom-forming diatom, Skeletonema costatum

scientific article published on 10 October 2014

Lateral symbiont acquisition in a maternally transmitted chemosynthetic clam endosymbiosis

scientific article published on 12 January 2008

Longitudinal microbiome profiling reveals impermanence of probiotic bacteria in domestic pigeons.

scientific article published on 17 June 2019

Metagenomic investigation of vestimentiferan tubeworm endosymbionts from Mid-Cayman Rise reveals new insights into metabolism and diversity

scientific article published on 27 January 2018

Metapangenomics of the oral microbiome provides insights into habitat adaptation and cultivar diversity ⬇️

scientific article published on 16 December 2020

Metatranscriptomic Analysis of Sulfur Oxidation Genes in the Endosymbiont of Solemya Velum ⬇️

scientific article published on June 20, 2011

Mixed transmission modes and dynamic genome evolution in an obligate animal-bacterial symbiosis

scientific article

Molecular characterization of methanotrophic communities in forest soils that consume atmospheric methane

scientific article published on 28 March 2007

Off-axis symbiosis found: Characterization and biogeography of bacterial symbionts of Bathymodiolus mussels from Lost City hydrothermal vents

scholarly article by Eric G DeChaine et al published November 2006 in Environmental Microbiology

Phylogenetic Characterization of Episymbiotic Bacteria Hosted by a Hydrothermal Vent Limpet (Lepetodrilidae, Vetigastropoda) ⬇️

scientific article published on April 1, 2011

Phylogenetic Relationships of the Filamentous Sulfur Bacterium Thiothrix ramosa Based on 16S rRNA Sequence Analysis

scientific article

Phylogenetic analyses of the core antenna domain: investigating the origin of photosystem I.

scientific article published in February 2005

Phylogenetic analysis of a highly specific association between ectosymbiotic, sulfur-oxidizing bacteria and a marine nematode

scientific article (publication date: December 1994)

Phylogenetic and metabolic diversity of bacteria associated with cystic fibrosis.

scientific article

Phylogenetic relationships of chemoautotrophic bacterial symbionts of Solemya velum say (Mollusca: Bivalvia) determined by 16S rRNA gene sequence analysis

scientific article (publication date: May 1992)

Population Dynamics of Two Toluene Degrading Bacterial Species in a Contaminated Stream.

scientific article published in February 2001

Pyrosequencing analysis of endosymbiont population structure: co-occurrence of divergent symbiont lineages in a single vesicomyid host clam

scientific article published on 21 April 2009

Quantifying nonspecific TEM beta-lactamase (blaTEM) genes in a wastewater stream

scientific article

Sequence of the core antenna domain from the anoxygenic phototroph Heliophilum fasciatum: implications for diversity of reaction center type I.

scientific article

Sequencing-independent method to generate oligonucleotide probes targeting a variable region in bacterial 16S rRNA by PCR with detachable primers.

scientific article

Shedding light: a phylotranscriptomic perspective illuminates the origin of photosymbiosis in marine bivalves

scientific article published on 01 May 2020

Symbioses of methanotrophs and deep-sea mussels (Mytilidae: Bathymodiolinae).

scientific article published on January 2006

Symbiosis of methylotrophic bacteria and deep-sea mussels

scientific article published in Nature

Symbiosis of thioautotrophic bacteria with Riftia pachyptila

scientific article

Symbiotic chemoautotrophic bacteria in marine invertebrates from sulphide-rich habitats

scientific article (publication date: 3 March 1983)

The Calyptogena magnifica chemoautotrophic symbiont genome.

scientific article

The effect of coral restoration on Caribbean reef fish communities

scientific article published on 02 November 2017

The evolutionary diversification of cyanobacteria: molecular-phylogenetic and paleontological perspectives

scientific article

The genome of the intracellular bacterium of the coastal bivalve, Solemya velum: a blueprint for thriving in and out of symbiosis

scientific article

The methanol dehydrogenase gene, mxaF, as a functional and phylogenetic marker for proteobacterial methanotrophs in natural environments

scientific article

The saccharibacterium TM7x elicits differential responses across its host range

scientific article published on 24 August 2020

Transmission strategies in a chemosynthetic symbiosis: detection and quantification of symbionts in host tissues and their environment

article

Two new Mycobacterium strains and their role in toluene degradation in a contaminated stream.

scientific article

Vertical distribution of microbial lipids and functional genes in chemically distinct layers of a highly polluted meromictic lake

article

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