List of works - Hiroyoshi Matsumura

A novel mechanism of allosteric regulation of archaeal phosphoenolpyruvate carboxylase: a combined approach to structure-based alignment and model assessment.

scientific article published on 30 June 2006

Application of femtosecond laser ablation for detaching grown protein crystals from glass capillary tube

scientific article

Approach for growth of high-quality and large protein crystals

scientific article published on 5 November 2010

C9orf72-derived arginine-rich poly-dipeptides impede phase modifiers

scientific article published on 06 September 2021

Conformational contagion in a protein: structural properties of a chameleon sequence

scientific article

Conformational plasticity of RNA for target recognition as revealed by the 2.15 A crystal structure of a human IgG-aptamer complex

scientific article

Cooling-rate screening system for determining protein crystal growth conditions

Crystal Growth Procedure of HIV-1 Protease-Inhibitor KNI-272 Complex for Neutron Structural Analysis at 1.9 Å Resolution

article

Crystal Structure of the N-terminal Domain of the Yeast General Corepressor Tup1p and Its Functional Implications

scientific article

Crystal Structure of the Superfamily 1 Helicase from Tomato Mosaic Virus

scientific article

Crystal structure and structure-based mutational analyses of RNase HIII from Bacillus stearothermophilus: a new type 2 RNase H with TBP-like substrate-binding domain at the N terminus

scientific article published on 28 November 2005

Crystal structure of 5-methylthioribose 1-phosphate isomerase product complex from Bacillus subtilis: Implications for catalytic mechanism

scientific article

Crystal structure of Tk-subtilisin folded without propeptide: requirement of propeptide for acceleration of folding

scientific article

Crystal structure of a human kynurenine aminotransferase II homologue from Pyrococcus horikoshii OT3 at 2.20 A resolution.

scientific article

Crystal structure of activated ribulose-1,5-bisphosphate carboxylase/oxygenase from green alga Chlamydomonas reinhardtii complexed with 2-carboxyarabinitol-1,5-bisphosphate

scientific article

Crystal structure of intein homing endonuclease II encoded in DNA polymerase gene from hyperthermophilic archaeon Thermococcus kodakaraensis strain KOD1.

scientific article published in May 2006

Crystal structure of rice Rubisco and implications for activation induced by positive effectors NADPH and 6-phosphogluconate

scientific article

Crystal structure of thioredoxin peroxidase from aerobic hyperthermophilic archaeon Aeropyrum pernix K1

scientific article published on 01 March 2006

Crystal structures of C4 form maize and quaternary complex of E. coli phosphoenolpyruvate carboxylases

scientific article

Crystallization and preliminary X-ray analysis of TBP-interacting protein from the hyperthermophilic archaeon Thermococcus kodakaraensis strain KOD1.

scientific article published on 23 January 2003

Crystallization and preliminary X-ray analysis of methylthioribose-1-phosphate isomerase from Bacillus subtilis.

scientific article published on June 2005

Crystallization and preliminary X-ray analysis of the tRNA thiolation enzyme MnmA from Escherichia coli complexed with tRNA(Glu).

scientific article published on 10 March 2006

Crystallization and preliminary X-ray crystallographic analysis of Ca2+-free primary Ca2+-sensor of Na+/Ca2+ exchanger

scientific article published on 28 November 2008

Crystallization and preliminary X-ray crystallographic analysis of a helicase-like domain from a tomato mosaic virus replication protein.

scientific article published on 30 November 2011

Crystallization and preliminary X-ray crystallographic studies of dissimilatory nitrite reductase isolated from Hyphomicrobium denitrificans A3151.

scientific article published on 26 November 2004

Crystallization and preliminary X-ray crystallographic studies of mavicyanin from Cucurbita pepo medullosa.

scientific article

Crystallization and preliminary X-ray diffraction analysis of orotate phosphoribosyltransferase from the human malaria parasite Plasmodium falciparum

scientific article

Crystallization and preliminary X-ray diffraction analysis of thioredoxin peroxidase from the aerobic hyperthermophilic archaeon Aeropyrum pernix K1.

scientific article

Crystallization and preliminary X-ray diffraction studies of C4-form phosphoenolpyruvate carboxylase from maize

scientific article published on 01 November 1999

Crystallization and preliminary X-ray diffraction studies of an RNA aptamer in complex with the human IgG Fc fragment

scientific article published on 30 September 2008

Crystallization and preliminary X-ray diffraction study of an active-site mutant of pro-Tk-subtilisin from a hyperthermophilic archaeon

scientific article

Crystallization and preliminary crystallographic analysis of orotidine 5'-monophosphate decarboxylase from the human malaria parasite Plasmodium falciparum

scientific article

Crystallization and preliminary neutron diffraction studies of HIV-1 protease cocrystallized with inhibitor KNI-272.

scientific article published on 25 October 2008

Development of protein crystallization and processing: femtosecond laser, all solid-state 193 nm laser, and solution stirring techniques

article

Effect of Laser Irradiation on Enzyme Activity

Enzymatic Characterization of 5-Methylthioribose 1-Phosphate Isomerase fromBacillus subtilis

scientific article published on 07 August 2007

Estimated effects of silicone glue on protein crystal growth

article

First determination of the inhibitor complex structure of human hematopoietic prostaglandin D synthase.

scientific article

Functional roles of a structural element involving Na+-pi interactions in the catalytic site of T1 lipase revealed by molecular dynamics simulations.

scientific article published in November 2009

High-resolution structure of exo-arabinanase from Penicillium chrysogenum

scientific article

Human hematopoietic prostaglandin D synthase inhibitor complex structures

scientific article

Identification of the interactions critical for propeptide-catalyzed folding of Tk-subtilisin

scientific article

Maize C4-form phosphoenolpyruvate carboxylase engineered to be functional in C3 plants: mutations for diminished sensitivity to feedback inhibitors and for increased substrate affinity.

scientific article published on 11 April 2008

Maize phosphoenolpyruvate carboxylase. Mutations at the putative binding site for glucose 6-phosphate caused desensitization and abolished responsiveness to regulatory phosphorylation.

scientific article published on 21 January 2005

Mechanism of metal activation of human hematopoietic prostaglandin D synthase

scientific article

Mechanistic Insights into the Hydrolysis and Synthesis of Ceramide by Neutral Ceramidase

scientific article

Molecular resolution investigation of tetragonal lysozyme (110) face in liquid by frequency-modulation atomic force microscopy

article published in 2010

New progress in crystallization technology of membrane protein and introduction of pharamaceutical innovation value chain

scientific article

Novel cation-pi interaction revealed by crystal structure of thermoalkalophilic lipase

scientific article

Overproduction and preliminary crystallographic study of a human kynurenine aminotransferase II homologue from Pyrococcus horikoshii OT3

scientific article

Oxidation of archaeal peroxiredoxin involves a hypervalent sulfur intermediate

scientific article

Phosphoenolpyruvate carboxylase: a new era of structural biology.

scientific article

Phosphoenolpyruvate carboxylase: three-dimensional structure and molecular mechanisms

scientific article (publication date: 15 June 2003)

Plausible phosphoenolpyruvate binding site revealed by 2.6 A structure of Mn2+-bound phosphoenolpyruvate carboxylase from Escherichia coli

scientific article

Preparation, crystallization and preliminary crystallographic analysis of old yellow enzyme from Trypanosoma cruzi

scientific article published on 29 September 2007

Processing of membrane protein crystal using ultraviolet laser irradiation

scientific article

Protein Cryocrystallography Using Laser-Processed Crystal

Protein crystallization in a 100 nl solution with new stirring equipment

scientific article published on 18 April 2008

Purification, crystallization and preliminary X-ray diffraction of SecDF, a translocon-associated membrane protein, from Thermus thermophilus

scientific article

Rational development of caged-biotin protein-labeling agents and some applications in live cells

scientific article

Requirement of left-handed glycine residue for high stability of the Tk-subtilisin propeptide as revealed by mutational and crystallographic analyses

scientific article

Solution-stirring method improves crystal quality of human triosephosphate isomerase

Structural Basis for the Serratia marcescens Lipase Secretion System: Crystal Structures of the Membrane Fusion Protein and Nucleotide-Binding Domain.

scientific article published on 2 November 2017

Structural Flexibility of an Inhibitor Overcomes Drug Resistance Mutations in Staphylococcus aureus FtsZ.

scientific article published on 16 June 2017

Structural Mechanism for Coordination of Proofreading and Polymerase Activities in Archaeal DNA Polymerases

scientific article published on 01 August 2005

Structural basis for the decarboxylation of orotidine 5'-monophosphate (OMP) by Plasmodium falciparum OMP decarboxylase

scientific article

Structural insight into the stereoselective production of PGF2α by Old Yellow Enzyme from Trypanosoma cruzi

scientific article

Structural reorganization of the copper binding site involving Thr15 of mavicyanin from Cucurbita pepo medullosa (zucchini) upon reduction.

scientific article published in April 2005

Structural, thermodynamic, and mutational analyses of a psychrotrophic RNase HI

scientific article

Structure and function of a hexameric copper-containing nitrite reductase

scientific article

Structure basis for the regulation of glyceraldehyde-3-phosphate dehydrogenase activity via the intrinsically disordered protein CP12

scientific article

Structure of HIV-1 protease in complex with potent inhibitor KNI-272 determined by high-resolution X-ray and neutron crystallography

scientific article

Structure of the glycosyltransferase EryCIII in complex with its activating P450 homologue EryCII

scientific article

Structure-function studies of ultrahigh molecular weight isoprenes provide key insights into their biosynthesis

scientific article published on 16 February 2021

Substrate-induced closing of the active site revealed by the crystal structure of pantothenate synthetase from Staphylococcus aureus

scientific article

The crystal structure of the outer membrane protein VceC from the bacterial pathogen Vibrio cholerae at 1.8 A resolution.

scientific article

The in silico screening and X-ray structure analysis of the inhibitor complex of Plasmodium falciparum orotidine 5'-monophosphate decarboxylase

scientific article

The significance of the flexible loop in the azurin (Az-iso2) from the obligate methylotroph Methylomonas sp. strain J

scientific article

X-ray crystallographic and MD simulation studies on the mechanism of interfacial activation of a family I.3 lipase with two lids

scientific article

X-ray structure of Galdieria Rubisco complexed with one sulfate ion per active site

scientific article

List of works by Hiroyoshi Matsumura

A novel mechanism of allosteric regulation of archaeal phosphoenolpyruvate carboxylase: a combined approach to structure-based alignment and model assessment.

Application of femtosecond laser ablation for detaching grown protein crystals from glass capillary tube

Approach for growth of high-quality and large protein crystals

C9orf72-derived arginine-rich poly-dipeptides impede phase modifiers

Conformational contagion in a protein: structural properties of a chameleon sequence

Conformational plasticity of RNA for target recognition as revealed by the 2.15 A crystal structure of a human IgG-aptamer complex

Cooling-rate screening system for determining protein crystal growth conditions

Crystal Growth Procedure of HIV-1 Protease-Inhibitor KNI-272 Complex for Neutron Structural Analysis at 1.9 Å Resolution

Crystal Structure of the N-terminal Domain of the Yeast General Corepressor Tup1p and Its Functional Implications

Crystal Structure of the Superfamily 1 Helicase from Tomato Mosaic Virus

Crystal structure and structure-based mutational analyses of RNase HIII from Bacillus stearothermophilus: a new type 2 RNase H with TBP-like substrate-binding domain at the N terminus

Crystal structure of 5-methylthioribose 1-phosphate isomerase product complex from Bacillus subtilis: Implications for catalytic mechanism

Crystal structure of Tk-subtilisin folded without propeptide: requirement of propeptide for acceleration of folding

Crystal structure of a human kynurenine aminotransferase II homologue from Pyrococcus horikoshii OT3 at 2.20 A resolution.

Crystal structure of activated ribulose-1,5-bisphosphate carboxylase/oxygenase from green alga Chlamydomonas reinhardtii complexed with 2-carboxyarabinitol-1,5-bisphosphate

Crystal structure of intein homing endonuclease II encoded in DNA polymerase gene from hyperthermophilic archaeon Thermococcus kodakaraensis strain KOD1.

Crystal structure of rice Rubisco and implications for activation induced by positive effectors NADPH and 6-phosphogluconate

Crystal structure of thioredoxin peroxidase from aerobic hyperthermophilic archaeon Aeropyrum pernix K1

Crystal structures of C4 form maize and quaternary complex of E. coli phosphoenolpyruvate carboxylases

Crystallization and preliminary X-ray analysis of TBP-interacting protein from the hyperthermophilic archaeon Thermococcus kodakaraensis strain KOD1.

Crystallization and preliminary X-ray analysis of methylthioribose-1-phosphate isomerase from Bacillus subtilis.

Crystallization and preliminary X-ray analysis of the tRNA thiolation enzyme MnmA from Escherichia coli complexed with tRNA(Glu).

Crystallization and preliminary X-ray crystallographic analysis of Ca2+-free primary Ca2+-sensor of Na+/Ca2+ exchanger

Crystallization and preliminary X-ray crystallographic analysis of a helicase-like domain from a tomato mosaic virus replication protein.

Crystallization and preliminary X-ray crystallographic studies of dissimilatory nitrite reductase isolated from Hyphomicrobium denitrificans A3151.

Crystallization and preliminary X-ray crystallographic studies of mavicyanin from Cucurbita pepo medullosa.

Crystallization and preliminary X-ray diffraction analysis of orotate phosphoribosyltransferase from the human malaria parasite Plasmodium falciparum

Crystallization and preliminary X-ray diffraction analysis of thioredoxin peroxidase from the aerobic hyperthermophilic archaeon Aeropyrum pernix K1.

Crystallization and preliminary X-ray diffraction studies of C4-form phosphoenolpyruvate carboxylase from maize

Crystallization and preliminary X-ray diffraction studies of an RNA aptamer in complex with the human IgG Fc fragment

Crystallization and preliminary X-ray diffraction study of an active-site mutant of pro-Tk-subtilisin from a hyperthermophilic archaeon

Crystallization and preliminary crystallographic analysis of orotidine 5'-monophosphate decarboxylase from the human malaria parasite Plasmodium falciparum

Crystallization and preliminary neutron diffraction studies of HIV-1 protease cocrystallized with inhibitor KNI-272.

Development of protein crystallization and processing: femtosecond laser, all solid-state 193 nm laser, and solution stirring techniques

Effect of Laser Irradiation on Enzyme Activity

Enzymatic Characterization of 5-Methylthioribose 1-Phosphate Isomerase fromBacillus subtilis

Estimated effects of silicone glue on protein crystal growth

First determination of the inhibitor complex structure of human hematopoietic prostaglandin D synthase.

Functional roles of a structural element involving Na+-pi interactions in the catalytic site of T1 lipase revealed by molecular dynamics simulations.

High-resolution structure of exo-arabinanase from Penicillium chrysogenum

Human hematopoietic prostaglandin D synthase inhibitor complex structures

Identification of the interactions critical for propeptide-catalyzed folding of Tk-subtilisin

Maize C4-form phosphoenolpyruvate carboxylase engineered to be functional in C3 plants: mutations for diminished sensitivity to feedback inhibitors and for increased substrate affinity.

Maize phosphoenolpyruvate carboxylase. Mutations at the putative binding site for glucose 6-phosphate caused desensitization and abolished responsiveness to regulatory phosphorylation.

Mechanism of metal activation of human hematopoietic prostaglandin D synthase

Mechanistic Insights into the Hydrolysis and Synthesis of Ceramide by Neutral Ceramidase

Molecular resolution investigation of tetragonal lysozyme (110) face in liquid by frequency-modulation atomic force microscopy

New progress in crystallization technology of membrane protein and introduction of pharamaceutical innovation value chain

Novel cation-pi interaction revealed by crystal structure of thermoalkalophilic lipase

Overproduction and preliminary crystallographic study of a human kynurenine aminotransferase II homologue from Pyrococcus horikoshii OT3

Oxidation of archaeal peroxiredoxin involves a hypervalent sulfur intermediate

Phosphoenolpyruvate carboxylase: a new era of structural biology.

Phosphoenolpyruvate carboxylase: three-dimensional structure and molecular mechanisms

Plausible phosphoenolpyruvate binding site revealed by 2.6 A structure of Mn2+-bound phosphoenolpyruvate carboxylase from Escherichia coli

Preparation, crystallization and preliminary crystallographic analysis of old yellow enzyme from Trypanosoma cruzi

Processing of membrane protein crystal using ultraviolet laser irradiation

Protein Cryocrystallography Using Laser-Processed Crystal

Protein crystallization in a 100 nl solution with new stirring equipment

Purification, crystallization and preliminary X-ray diffraction of SecDF, a translocon-associated membrane protein, from Thermus thermophilus

Rational development of caged-biotin protein-labeling agents and some applications in live cells

Requirement of left-handed glycine residue for high stability of the Tk-subtilisin propeptide as revealed by mutational and crystallographic analyses

Solution-stirring method improves crystal quality of human triosephosphate isomerase

Structural Basis for the Serratia marcescens Lipase Secretion System: Crystal Structures of the Membrane Fusion Protein and Nucleotide-Binding Domain.

Structural Flexibility of an Inhibitor Overcomes Drug Resistance Mutations in Staphylococcus aureus FtsZ.

Structural Mechanism for Coordination of Proofreading and Polymerase Activities in Archaeal DNA Polymerases

Structural basis for the decarboxylation of orotidine 5'-monophosphate (OMP) by Plasmodium falciparum OMP decarboxylase

Structural insight into the stereoselective production of PGF2α by Old Yellow Enzyme from Trypanosoma cruzi

Structural reorganization of the copper binding site involving Thr15 of mavicyanin from Cucurbita pepo medullosa (zucchini) upon reduction.

Structural, thermodynamic, and mutational analyses of a psychrotrophic RNase HI

Structure and function of a hexameric copper-containing nitrite reductase

Structure basis for the regulation of glyceraldehyde-3-phosphate dehydrogenase activity via the intrinsically disordered protein CP12

Structure of HIV-1 protease in complex with potent inhibitor KNI-272 determined by high-resolution X-ray and neutron crystallography

Structure of the glycosyltransferase EryCIII in complex with its activating P450 homologue EryCII

Structure-function studies of ultrahigh molecular weight isoprenes provide key insights into their biosynthesis

Substrate-induced closing of the active site revealed by the crystal structure of pantothenate synthetase from Staphylococcus aureus

The crystal structure of the outer membrane protein VceC from the bacterial pathogen Vibrio cholerae at 1.8 A resolution.

The in silico screening and X-ray structure analysis of the inhibitor complex of Plasmodium falciparum orotidine 5'-monophosphate decarboxylase

The significance of the flexible loop in the azurin (Az-iso2) from the obligate methylotroph Methylomonas sp. strain J

X-ray crystallographic and MD simulation studies on the mechanism of interfacial activation of a family I.3 lipase with two lids