List of works - Pedro R. Peres-Neto

A NEW PHYLOGENETIC METHOD FOR IDENTIFYING EXCEPTIONAL PHENOTYPIC DIVERSIFICATION

scientific article published on 20 September 2011

A community of metacommunities: exploring patterns in species distributions across large geographical areas

scientific article

A critical issue in model-based inference for studying trait-based community assembly and a solution.

scientific article published on 12 January 2017

A quantitative framework to estimate the relative importance of environment, spatial variation and patch connectivity in driving community composition

scientific article

Allopatric distribution of generalist parasites: interplay between postglacial dispersal and host species

article

An empirical comparison of SPM preprocessing parameters to the analysis of fMRI data

scientific article

Assessing the robustness of randomization tests: examples from behavioural studies

scientific article published on 01 January 2001

Can wide consultation help with setting priorities for large-scale biodiversity monitoring programs?

scientific article

Climate, history and life-history strategies interact in explaining differential macroecological patterns in freshwater zooplankton

scientific article published in 2016

Combining the fourth-corner and the RLQ methods for assessing trait responses to environmental variation

scientific article published on January 2014

Competitive effects between rainbow trout and Atlantic salmon in natural and artificial streams

article by Aimee Lee S. Houde et al published 4 December 2014 in Ecology of Freshwater Fish

Convergent polymorphism between stream and lake habitats: the case of brook char

article

Data curation: Act to staunch loss of research data

scientific article

Deconstructing the relationships between phylogenetic diversity and ecology: a case study on ecosystem functioning

scientific article

Delineating marine ecological units: a novel approach for deciding which taxonomic group to use and which taxonomic resolution to choose

scientific article published in 2015

Determinism of bacterial metacommunity dynamics in the southern East China Sea varies depending on hydrography

article

Diversity from genes to ecosystems: A unifying framework to study variation across biological metrics and scales

article

Early growth trajectories affect sexual responsiveness

scientific article published on 8 January 2014

Ecological Data Should Not Be So Hard to Find and Reuse

scientific article published on 02 May 2019

Ecology in the age of DNA barcoding: the resource, the promise and the challenges ahead.

scientific article

Effects of competition on fitness-related traits.

scientific article

Effects of foraging and sexual selection on ecomorphology of a fish with alternative reproductive tactics

scientific article published in 2013

Epidemiological landscape models reproduce cyclic insect outbreaks

scholarly article by Hedvig K. Nenzén et al published September 2017 in Ecological Complexity

Estimating and controlling for spatial structure in the study of ecological communities

article

Habitat-based polymorphism is common in stream fishes

scientific article published on 12 August 2014

How many principal components? stopping rules for determining the number of non-trivial axes revisited

How well do multivariate data sets match? The advantages of a Procrustean superimposition approach over the Mantel test

scientific article

Improving phylogenetic regression under complex evolutionary models

scientific article published on February 2016

Inconsistent response of taxonomic groups to space and environment in mediterranean and tropical pond metacommunities

scientific article published in 2022

Inferring explicit weighted consensus networks to represent alternative evolutionary histories

scientific article

Influence of agronomic practices, local environment and landscape structure on predatory beetle assemblage

MEMGENE: Spatial pattern detection in genetic distance data

article by Paul Galpern et al published 27 August 2014 in Methods in Ecology and Evolution

Measuring protected-area isolation and correlations of isolation with land-use intensity and protection status

scientific article published on 13 April 2011

Meso-scale distributions of lake zooplankton reveal spatially and temporally varying trophic cascades

article

Metacommunity phylogenetics: separating the roles of environmental filters and historical biogeography.

scientific article

Methods to account for spatial autocorrelation in the analysis of species distributional data: a review

article

Much beyond Mantel: bringing Procrustes association metric to the plant and soil ecologist's toolbox

scientific article

Object weighting: a new clustering approach to deal with outliers and cluster overlap in computational biology

scientific article published on 07 June 2019

On the evolution of dispersal via heterogeneity in spatial connectivity.

scientific article published in March 2015

Phylogenetic eigenvector maps: a framework to model and predict species traits

article

Phylogenetic gradient analysis: environmental drivers of phylogenetic variation across ecological communities

article

Quantifying and disentangling dispersal in metacommunities: how close have we come? How far is there to go?

scientific article published in 2009

Reproducibility in ecology and evolution: Minimum standards for data and code

scientific article published in May 2023

Seasonal trophic dynamics affect zooplankton community variability

article

Shifts in climate foster exceptional opportunities for species radiation: the case of South african geraniums

scientific article

Spatial and species compositional networks for inferring connectivity patterns in ecological communities

article

Spatial isolation and fish communities in drainage lakes

article

Spatial modeling in ecology: the flexibility of eigenfunction spatial analyses

scientific article published in October 2006

Spatial modelling: a comprehensive framework for principal coordinate analysis of neighbour matrices (PCNM)

article

Spatial variability of climate and land-use effects on lakes of the northern Great Plains

article

Spatiotemporal dynamics in a seasonal metacommunity structure is predictable: the case of floodplain-fish communities

article

The Internal Structure of Metacommunities

scientific article

The influence of swimming demand on phenotypic plasticity and morphological integration: a comparison of two polymorphic charr species

scientific article published in May 2004

The interaction between the spatial distribution of resource patches and population density: consequences for intraspecific growth and morphology

scientific article published on 6 April 2015

The interaction of phylogeny and community structure: linking clades' ecological structures and trait evolution

scholarly article published 30 August 2018

The role of environmental and spatial processes in structuring lake communities from bacteria to fish

scientific article published in December 2006

Towards an applied metaecology

scientific article published on 21 September 2018

Type 1 error rates of the parsimony permutation tail probability test

scientific article

Using directed phylogenetic networks to retrace species dispersal history

article

Using functional traits to investigate the determinants of crustacean zooplankton community structure

scientific article published in 2013

Using null model analysis of species co-occurrences to deconstruct biodiversity patterns and select indicator species

article

Variation partitioning of species data matrices: estimation and comparison of fractions

scientific article

Weighted bootstrapping: a correction method for assessing the robustness of phylogenetic trees

scientific article

What controls who is where in freshwater fish communities – the roles of biotic, abiotic, and spatial factors

scholarly article by Donald A Jackson et al published 2001 in Canadian Journal of Fisheries and Aquatic Sciences

When Are Random Data Not Random, or Is the PTP Test Useful?

article published in 2000

Will technology trample peer review in ecology? Ongoing issues and potential solutions

article

List of works by Pedro R. Peres-Neto

A NEW PHYLOGENETIC METHOD FOR IDENTIFYING EXCEPTIONAL PHENOTYPIC DIVERSIFICATION

A community of metacommunities: exploring patterns in species distributions across large geographical areas

A critical issue in model-based inference for studying trait-based community assembly and a solution.

A quantitative framework to estimate the relative importance of environment, spatial variation and patch connectivity in driving community composition

Allopatric distribution of generalist parasites: interplay between postglacial dispersal and host species

An empirical comparison of SPM preprocessing parameters to the analysis of fMRI data

Assessing the robustness of randomization tests: examples from behavioural studies

Can wide consultation help with setting priorities for large-scale biodiversity monitoring programs?

Climate, history and life-history strategies interact in explaining differential macroecological patterns in freshwater zooplankton

Combining the fourth-corner and the RLQ methods for assessing trait responses to environmental variation

Competitive effects between rainbow trout and Atlantic salmon in natural and artificial streams

Convergent polymorphism between stream and lake habitats: the case of brook char

Data curation: Act to staunch loss of research data

Deconstructing the relationships between phylogenetic diversity and ecology: a case study on ecosystem functioning

Delineating marine ecological units: a novel approach for deciding which taxonomic group to use and which taxonomic resolution to choose

Determinism of bacterial metacommunity dynamics in the southern East China Sea varies depending on hydrography

Diversity from genes to ecosystems: A unifying framework to study variation across biological metrics and scales

Early growth trajectories affect sexual responsiveness

Ecological Data Should Not Be So Hard to Find and Reuse

Ecology in the age of DNA barcoding: the resource, the promise and the challenges ahead.

Effects of competition on fitness-related traits.

Effects of foraging and sexual selection on ecomorphology of a fish with alternative reproductive tactics

Epidemiological landscape models reproduce cyclic insect outbreaks

Estimating and controlling for spatial structure in the study of ecological communities

Habitat-based polymorphism is common in stream fishes

How many principal components? stopping rules for determining the number of non-trivial axes revisited

How well do multivariate data sets match? The advantages of a Procrustean superimposition approach over the Mantel test

Improving phylogenetic regression under complex evolutionary models

Inconsistent response of taxonomic groups to space and environment in mediterranean and tropical pond metacommunities

Inferring explicit weighted consensus networks to represent alternative evolutionary histories

Influence of agronomic practices, local environment and landscape structure on predatory beetle assemblage

MEMGENE: Spatial pattern detection in genetic distance data

Measuring protected-area isolation and correlations of isolation with land-use intensity and protection status

Meso-scale distributions of lake zooplankton reveal spatially and temporally varying trophic cascades

Metacommunity phylogenetics: separating the roles of environmental filters and historical biogeography.

Methods to account for spatial autocorrelation in the analysis of species distributional data: a review

Much beyond Mantel: bringing Procrustes association metric to the plant and soil ecologist's toolbox

Object weighting: a new clustering approach to deal with outliers and cluster overlap in computational biology

On the evolution of dispersal via heterogeneity in spatial connectivity.

Phylogenetic eigenvector maps: a framework to model and predict species traits

Phylogenetic gradient analysis: environmental drivers of phylogenetic variation across ecological communities

Quantifying and disentangling dispersal in metacommunities: how close have we come? How far is there to go?

Reproducibility in ecology and evolution: Minimum standards for data and code

Seasonal trophic dynamics affect zooplankton community variability

Shifts in climate foster exceptional opportunities for species radiation: the case of South african geraniums

Spatial and species compositional networks for inferring connectivity patterns in ecological communities

Spatial isolation and fish communities in drainage lakes

Spatial modeling in ecology: the flexibility of eigenfunction spatial analyses

Spatial modelling: a comprehensive framework for principal coordinate analysis of neighbour matrices (PCNM)

Spatial variability of climate and land-use effects on lakes of the northern Great Plains

Spatiotemporal dynamics in a seasonal metacommunity structure is predictable: the case of floodplain-fish communities

The Internal Structure of Metacommunities

The influence of swimming demand on phenotypic plasticity and morphological integration: a comparison of two polymorphic charr species

The interaction between the spatial distribution of resource patches and population density: consequences for intraspecific growth and morphology

The interaction of phylogeny and community structure: linking clades' ecological structures and trait evolution

The role of environmental and spatial processes in structuring lake communities from bacteria to fish

Towards an applied metaecology

Type 1 error rates of the parsimony permutation tail probability test

Using directed phylogenetic networks to retrace species dispersal history

Using functional traits to investigate the determinants of crustacean zooplankton community structure

Using null model analysis of species co-occurrences to deconstruct biodiversity patterns and select indicator species

Variation partitioning of species data matrices: estimation and comparison of fractions

Weighted bootstrapping: a correction method for assessing the robustness of phylogenetic trees

What controls who is where in freshwater fish communities – the roles of biotic, abiotic, and spatial factors

When Are Random Data Not Random, or Is the PTP Test Useful?

Will technology trample peer review in ecology? Ongoing issues and potential solutions