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List of works by Stefan Müller

A Deficiency-Based Approach to Parametrizing Positive Equilibria of Biochemical Reaction Systems

scientific article published on 31 December 2018

A generalized model of the repressilator

scientific article published on 2 September 2006

A mathematical framework for yield (versus rate) optimization in constraint-based modeling and applications in metabolic engineering.

scientific article published on 7 February 2018

A minimal and self-consistent in silico cell model based on macromolecular interactions

scientific article published on October 2007

A new dynamic model for highly efficient mass transfer in aerated bioreactors and consequences for kLa identification

scientific article published on 25 July 2012

Detailed Balance [Formula: see text] Complex Balance [Formula: see text] Cycle Balance: A Graph-Theoretic Proof for Reaction Networks and Markov Chains

scientific article published on 03 September 2020

Elementary Vectors and Conformal Sums in Polyhedral Geometry and their Relevance for Metabolic Pathway Analysis

scientific article published on 24 May 2016

Elementary vectors and autocatalytic sets for resource allocation in next-generation models of cellular growth

scientific article published on 01 February 2022

Elucidating the adaptation and temporal coordination of metabolic pathways using in-silico evolution

scientific article published on 15 January 2014

Enzyme allocation problems in kinetic metabolic networks: optimal solutions are elementary flux modes

scientific article published in December 2013

Flux tope analysis: studying the coordination of reaction directions in metabolic networks

scientific article published on 01 January 2019

From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints.

scientific article

Inverse problems in systems biology

Parameter identification for chemical reaction systems using sparsity enforcing regularization: a case study for the chlorite-iodide reaction

scientific article published in March 2009

Practical Guidelines for Incorporating Knowledge-Based and Data-Driven Strategies into the Inference of Gene Regulatory Networks

scientific article

Resource allocation in metabolic networks: kinetic optimization and approximations by FBA.

scientific article

The Center Problem for the Lotka Reactions with Generalized Mass-Action Kinetics.

scientific article

The SBML ODE Solver Library: a native API for symbolic and fast numerical analysis of reaction networks

scientific article

Which sets of elementary flux modes form thermodynamically feasible flux distributions?

scientific article published on 04 March 2016

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