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List of works by David Edwards

A Survey of the Brassica rapa genome by BAC-end sequence analysis and comparison with Arabidopsis thaliana.

scientific article published in December 2006

A bi-filtering method for processing single nucleotide polymorphism array data improves the quality of genetic map and accuracy of quantitative trait locus mapping in doubled haploid populations of polyploid Brassica napus

scientific article published on 28 May 2015

A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies

scientific article published on 5 April 2014

A comparative map viewer integrating genetic maps for Brassica and Arabidopsis

scientific article

A complex recombination pattern in the genome of allotetraploid Brassica napus as revealed by a high-density genetic map.

scientific article

A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: insights into plant-microbe interactions and legume evolution.

scientific article published on 24 August 2016

A consensus map of rapeseed (Brassica napus L.) based on diversity array technology markers: applications in genetic dissection of qualitative and quantitative traits

scientific article

A differential k-mer analysis pipeline for comparing RNA-Seq transcriptome and meta-transcriptome datasets without a reference

scientific article published on 27 November 2018

A high-density SNP genotyping array for Brassica napus and its ancestral diploid species based on optimised selection of single-locus markers in the allotetraploid genome

scientific article

A high-throughput SNP array in the amphidiploid species Brassica napus shows diversity in resistance genes

scientific article

A reference genome for pea provides insight into legume genome evolution

scientific article published on 02 September 2019

A transcriptomics resource for wheat functional genomics

scientific article published in November 2004

ANALYSIS OF THE BRASSICA ´A´ AND ´C´ GENOMES AND COMPARISON WITH THE GENOME OF ARABIDOPSIS THALIANA

Accessing complex crop genomes with next-generation sequencing ⬇️

scientific article published on 05 September 2012

Accessing integrated Brassica genetic and genomic data using the BASC Server.

scientific article

Adapting legume crops to climate change using genomic approaches.

scientific article published on 30 March 2018

Advances in Integrating Genomics and Bioinformatics in the Plant Breeding Pipeline

article

Advances in genomics for adapting crops to climate change

scholarly article by Armin Scheben et al published October 2016 in Current plant biology

An advanced reference genome of Trifolium subterraneum L. reveals genes related to agronomic performance

scientific article published on 23 January 2017

An efficient approach to BAC based assembly of complex genomes

scientific article published on 20 January 2016

Analytical and Decision Support Tools for Genomics-Assisted Breeding

scientific article

Application of genomics-assisted breeding for generation of climate resilient crops: progress and prospects

scientific article (publication date: 2015)

Assembly and comparison of two closely related Brassica napus genomes.

scientific article published on 12 April 2017

Assembly of the non-heading pak choi genome and comparison with the genomes of heading Chinese cabbage and the oilseed yellow sarson

scientific article published on 07 December 2020

Assessing and Exploiting Functional Diversity in Germplasm Pools to Enhance Abiotic Stress Adaptation and Yield in Cereals and Food Legumes

scientific article published on 29 August 2017

Author Correction: A chickpea genetic variation map based on the sequencing of 3,366 genomes

scientific article published in 2022

Author Correction: Plant pan-genomes are the new reference

scientific article published on 02 November 2020

AutoSNPdb: an annotated single nucleotide polymorphism database for crop plants

scientific article published on 14 October 2008

Automated discovery of single nucleotide polymorphism and simple sequence repeat molecular genetic markers

scientific article published in January 2007

BASC: an integrated bioinformatics system for Brassica research

scientific article published on 5 December 2006

Bias in resistance gene prediction due to repeat masking

article

BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes

scientific article published in July 2016

BioNanoAnalyst: a visualisation tool to assess genome assembly quality using BioNano data.

scientific article published on 30 June 2017

Bioinformatics Tools to Assist Breeding for Climate Change

Bioinformatics and Plant Genomics for Staple Crops Improvement

article

Bioinformatics tools and databases for analysis of next-generation sequence data.

scientific article

Bioinformatics: identification of markers from next-generation sequence data

scientific article

Bottlenecks for genome-edited crops on the road from lab to farm

scientific article published on 26 October 2018

Brassica ASTRA: an integrated database for Brassica genomic research

scientific article

Bread matters: a national initiative to profile the genetic diversity of Australian wheat

scientific article

Building a successful international research community through data sharing: The case of the Wheat Information System (WheatIS)

CMap3D: a 3D visualization tool for comparative genetic maps

scientific article

Capturing Wheat Phenotypes at the Genome Level

scientific article published in 2022

Capturing the biofuel wellhead and powerhouse: the chloroplast and mitochondrial genomes of the leguminous feedstock tree Pongamia pinnata

scientific article (publication date: 2012)

Characterization of disease resistance genes in the Brassica napus pangenome reveals significant structural variation

scientific article published on 10 October 2019

Characterization of simple sequence repeat markers derivedin silicofromBrassica rapabacterial artificial chromosome sequences and their application inBrassica napus

article

Characterization of the flanking regions of Zea mays microsatellites reveals a large number of useful sequence polymorphisms

scientific article

Chloroplast genomics: Expanding resources for an evolutionary conserved miniature molecule with enigmatic applications

scientific article published in 2016

Chromosomal genomics facilitates fine mapping of a Russian wheat aphid resistance gene

scientific article published on 11 April 2015

CicArVarDB: SNP and InDel database for advancing genetics research and breeding applications in chickpea

scientific article published on 19 August 2015

Climate Clever Clovers: New Paradigm to Reduce the Environmental Footprint of Ruminants by Breeding Low Methanogenic Forages Utilizing Haplotype Variation

scientific article published on 5 September 2017

Comparative analysis ofStowaway-like miniature inverted repeat transposable elements in wheat group 7 chromosomes: Abundance, composition, and evolution

article

Comparison and evolutionary analysis of Brassica nucleotide binding site leucine rich repeat (NLR) genes and importance for disease resistance breeding

scientific article published on 11 November 2020

Comparison of transcription of multiple genes at three developmental stages of the plant pathogen Sclerotinia sclerotiorum

scientific article published in May 2006

Computational Identification and Comparative Analysis of miRNAs in Wheat Group 7 Chromosomes

article

Construction and comparison of three reference-quality genome assemblies for soybean

scientific article published on 28 October 2019

Copy number variation and disease resistance in plants

scientific article

Coverage-based consensus calling (CbCC) of short sequence reads and comparison of CbCC results to identify SNPs in chickpea (Cicer arietinum; Fabaceae), a crop species without a reference genome

scientific article

CropSNPdb: a database of SNP array data for Brassica crops and hexaploid bread wheat

scientific article published on 28 January 2019

DNA Sequence Databases

Databases for Wheat Genomics and Crop Improvement

scientific article published in January 2017

De novo sequencing of plant genomes using second-generation technologies

scientific article

Detection of Epistasis for Seed and Some Phytochemical Traits in Coriander under Different Irrigation Regimes

scientific article published in 2021

Development and Validation of –Expressed Molecular Markers Specific for the Long Arm of Chromosome 7E

scientific article published in 2016

Development of chromosome-arm-specific microsatellite markers in Triticum aestivum (Poaceae) using NGS technology

scientific article published on 30 August 2012

Differential Regulation of Genes Involved in Root Morphogenesis and Cell Wall Modification is Associated with Salinity Tolerance in Chickpea.

scientific article published on 19 March 2018

Discovering genetic polymorphisms in next-generation sequencing data

scientific article

Discovery of Single Nucleotide Polymorphisms in Complex Genomes Using SGSautoSNP.

scientific article published on 27 August 2012

Dispersion and domestication shaped the genome of bread wheat

scientific article published on 24 January 2013

Diversity of Phytosterols in Leaves of Wild Brassicaceae Species as Compared to Brassica napus Cultivars: Potential Traits for Insect Resistance and Abiotic Stress Tolerance

scientific article published in 2023

Draft Genome Assembly and Transcriptome Dataset for European Turnip (<i>Brassica rapa</i> L. ssp. <i>rapifera</i>), ECD4 Carrying Clubroot Resistance

publication published on 02 July 2021

Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement

scientific article published on 27 January 2013

Early transcriptional changes in the reef-building coral Acropora aspera in response to thermal and nutrient stress

scientific article published on 2 December 2014

Editorial overview: Feeding the world in a changing climate

scientific article published on 19 September 2018

Evaluating Plant Gene Models Using Machine Learning

scientific article published in 2022

Exploring the genetic and adaptive diversity of a pan-Mediterranean crop wild relative: narrow-leafed lupin

scientific article published on 20 January 2018

Frontiers in Dissecting and Managing <i>Brassica</i> Diseases: From Reference-Based RGA Candidate Identification to Building Pan-RGAomes

scientific article published on 25 November 2020

Functional genomics to study stress responses in crop legumes: progress and prospects

scientific article published in 2013

Future tools for association mapping in crop plants

scientific article

Gene Discovery and Microarray-Based Transcfuptome Analysis of the Grass-Endophyte Association

article

Gene loss in the fungal canola pathogen Leptosphaeria maculans

scientific article published on 25 November 2014

Genetic Mapping, Candidate Gene Identification and Marker Validation for Host Plant Resistance to the Race 4 of Fusarium oxysporum f. sp. cubense Using Musa acuminata ssp. malaccensis

scientific article published in 2023

Genetic and physical mapping of flowering time loci in canola (Brassica napus L.)

scientific article published on 07 September 2012

Genetic and signalling pathways of dry fruit size: targets for genome editing-based crop improvement

scientific article published on 25 January 2020

Genetic map construction and QTL mapping of resistance to blackleg (Leptosphaeria maculans) disease in Australian canola (Brassica napus L.) cultivars.

scientific article published on 11 October 2009

Genetic maps and the use of synteny

Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing

publication published on 08 February 2021

Genetic, Biochemical, and Morphological Diversity of the Legume Biofuel Tree Pongamia pinnata

Genome Analysis Identified Novel Candidate Genes for Ascochyta Blight Resistance in Chickpea Using Whole Genome Re-sequencing Data

scientific article

Genome editors take on crops

scientific article published on 16 March 2017

Genome sequence data: management, storage, and visualization

scientific article

Genome sequencing approaches and successes

scientific article published on January 2009

Genome-Wide Association Study of Genetic Control of Seed Fatty Acid Biosynthesis in Brassica napus

scientific article published on January 2016

Genome-Wide Identification and Evolution of Receptor-Like Kinases (RLKs) and Receptor like Proteins (RLPs) in <i>Brassica juncea</i>

scientific article published on 30 December 2020

Genome-wide Association Study Identifies New Loci for Resistance to Leptosphaeria maculans in Canola

scientific article published on 24 October 2016

Genome-wide delineation of natural variation for pod shatter resistance in Brassica napus

scientific article

Genome-wide identification and comparative analysis of NBS-LRR resistance genes in Brassica napus

article

Genome-wide survey of the seagrass Zostera muelleri suggests modification of the ethylene signalling network.

scientific article

Genomic advances will herald new insights into the Brassica: Leptosphaeria maculans pathosystem

scientific article published on 25 May 2011

Genomic comparison of two independent seagrass lineages reveals habitat-driven convergent evolution.

scientific article published in June 2018

Genotype–Environment mismatch of kelp forests under climate change

scientific article published in 2021

Genotyping by sequencing approaches to characterise crop genomes: choosing the right tool for the right application

scientific article

Global agricultural intensification during climate change: a role for genomics

scientific article published in April 2016

Haplotype mapping uncovers unexplored variation in wild and domesticated soybean at the major protein locus cqProt-003

scientific article published on 09 February 2022

High-resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus

scientific article published on 10 March 2015

High-throughput genotyping for species identification and diversity assessment in germplasm collections

scientific article published on 31 January 2015

Homoeologous exchange is a major cause of gene presence/absence variation in the amphidiploid Brassica napus

scientific article published on 10 January 2018

INDEL variation in the regulatory region of the major flowering time gene LanFTc1 is associated with vernalization response and flowering time in narrow-leafed lupin (Lupinus angustifolius L.)

article

INTEGRATING AND INTERROGATING DIVERSE BRASSICA DATA WITHIN AN ENSEMBL STRUCTURED DATABASE

Identification and QTL mapping of resistance to Turnip yellows virus (TuYV) in oilseed rape, Brassica napus

scientific article published on 05 November 2019

Identification and characterization of candidate Rlm4 blackleg resistance genes in Brassica napus using next-generation sequencing

scientific article

Identification and characterization of more than 4 million intervarietal SNPs across the group 7 chromosomes of bread wheat

scientific article published on 22 August 2014

Identification and characterization of simple sequence repeat (SSR) markers derived in silico from Brassica oleracea genome shotgun sequences

article

Identification and characterization of simple sequence repeat (SSR) markers from Fragaria x ananassa expressed sequences

article

Identification and characterization of simple sequence repeat markers from Brassica napus expressed sequences

article

Identification of systemic responses in soybean nodulation by xylem sap feeding and complete transcriptome sequencing reveal a novel component of the autoregulation pathway

scientific article published on 24 May 2012

Identifying genetic diversity of avirulence genes in Leptosphaeria maculans using whole genome sequencing

article

Improvements in Genomic Technologies: Application to Crop Genomics

scientific article published on 8 March 2017

Insight into the evolution and functional characteristics of the pan-genome assembly from sesame landraces and modern cultivars

article

Integrated physical map of bread wheat chromosome arm 7DS to facilitate gene cloning and comparative studies

scientific article published in January 2019

Investigating Drought Tolerance in Chickpea Using Genome-Wide Association Mapping and Genomic Selection Based on Whole-Genome Resequencing Data.

scientific article published on 19 February 2018

Large-Scale Structural Variation Detection in Subterranean Clover Subtypes Using Optical Mapping

scientific article published on 17 July 2018

Legume Pangenome Construction Using an Iterative Mapping and Assembly Approach

scientific article published on 01 January 2020

Linkage mapping and QTL analysis of flowering time using ddRAD sequencing with genotype error correction in Brassica napus

scientific article published on 07 December 2020

Machine learning in agriculture: from silos to marketplaces

scientific article published on 02 December 2020

Machine learning models outperform deep learning models, provide interpretation and facilitate feature selection for soybean trait prediction

scientific article published on 08 April 2022

Mapping QTLs of resistance to head splitting in cabbage (Brassica oleracea L.var. capitata L.)

Method for Genome-Wide Association Study: A Soybean Example

scientific article published on 01 January 2020

Mining for SNPs and SSRs using SNPServer, dbSNP and SSR taxonomy tree

scientific article

Mining for single nucleotide polymorphisms and insertions/deletions in maize expressed sequence tag data

scientific article

Molecular Genetic Markers: Discovery, Applications, Data Storage and Visualisation

Molecular Marker Discovery and Genetic Map Visualisation

scholarly article published 2009

Molecular mapping of qualitative and quantitative loci for resistance to Leptosphaeria maculans causing blackleg disease in canola (Brassica napus L.).

scientific article published on 28 March 2012

Molecular marker databases

scientific article published on January 2015

Multiple Genes Encoding the Conserved CCAAT-Box Transcription Factor Complex Are Expressed in Arabidopsis ⬇️

scientific article published on July 1, 1998

New computational tools for brassica genome research

scientific article published on January 2004

New technologies for ultra-high throughput genotyping in plants

scientific article

New technologies for ultrahigh-throughput genotyping in plant taxonomy

scientific article published in January 2014

Next Generation Sequencing and Germplasm Resources

scientific article published on 7 November 2013

Next generation characterisation of cereal genomes for marker discovery

scientific article published on 25 November 2013

Next-generation sequencing applications for wheat crop improvement.

scientific article published on 20 January 2012

Pangenomics Comes of Age: From Bacteria to Plant and Animal Applications

scientific article published on 24 December 2019

Pangenomics and Crop Genome Adaptation in a Changing Climate

scientific article published in 2022

Plant bioinformatics: from genome to phenome

scientific article published on May 2004

Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome

scientific article published on 21 August 2014

Plant genome sequencing: applications for crop improvement

scientific article

Plant pan-genomes are the new reference

scientific article published on 20 July 2020

Plant pangenomics: approaches, applications and advancements

scientific article published on 23 January 2020

Population Diversity of Leptosphaeria maculans in Australia

article

Predicting Cloned Disease Resistance Gene Homologs (CDRHs) in Radish, Underutilised Oilseeds, and Wild Brassicaceae Species ⬇️

scientific article published on 8 November 2022

Predicting polymorphic EST-SSRs in silico

scientific article published on 11 February 2013

Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics

article

Prioritization of candidate genes in "QTL-hotspot" region for drought tolerance in chickpea (Cicer arietinum L.).

scientific article published on 19 October 2015

Progress in single-access information systems for wheat and rice crop improvement

scientific article published on 01 March 2019

QTL Genetic Mapping Study for Traits Affecting Meal Quality in Winter Oilseed Rape (Brassica Napus L.)

scientific article published in 2021

Quantitative Trait Locus Mapping of Resistance to Turnip Yellows Virus in <i>Brassica rapa</i> and <i>Brassica oleracea</i> and Introgression of These Resistances by Resynthesis Into Allotetraploid Plants for Deployment in <i>Brassica napus</i>

scientific article published on 10 December 2021

RNA-Seq and metabolic flux analysis of Tetraselmis sp. M8 during nitrogen starvation reveals a two-stage lipid accumulation mechanism.

scientific article published on 6 June 2017

Rapid divergence of repetitive DNAs in Brassica relatives

scientific article published on 13 December 2010

Recent Findings Unravel Genes and Genetic Factors Underlying <i>Leptosphaeria maculans</i> Resistance in <i>Brassica napus</i> and Its Relatives

scientific article published on 30 December 2020

Redundancy based detection of sequence polymorphisms in expressed sequence tag data using autoSNP.

scientific article

Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits

scientific article published on 29 April 2019

Resources for image-based high-throughput phenotyping in crops and data sharing challenges

scientific article published in 2021

Revolution in Genotyping Platforms for Crop Improvement.

scientific article

Rice 3D chromatin structure correlates with sequence variation and meiotic recombination rate

scientific article published on 12 May 2020

SNP Discovery Using a Pangenome: Has the Single Reference Approach Become Obsolete?

scientific article

SNP analysis ofMacadamia integrifoliachloroplast genomes to determine the genetic structure of wild populations

SNP discovery and applications in Brassica napus

SNP markers-based map construction and genome-wide linkage analysis in Brassica napus

article

SNPServer: a real-time SNP discovery tool

scientific article

SSRPrimer and SSR Taxonomy Tree: Biome SSR discovery

scientific article published on July 2006

Scanning the effects of ethyl methanesulfonate on the whole genome of Lotus japonicus using second-generation sequencing analysis

scientific article

Second-generation sequencing for gene discovery in the Brassicaceae

scientific article published in August 2012

Sequence Based DNA Markers and Genotyping for Cereal Genomics and Breeding

Sequence and structure of Brassica rapa chromosome A3

scientific article

Sequencing and assembly of low copy and genic regions of isolated Triticum aestivum chromosome arm 7DS.

scientific article

Sequencing wheat chromosome arm 7BS delimits the 7BS/4AL translocation and reveals homoeologous gene conservation

scientific article

Shifting the limits in wheat research and breeding using a fully annotated reference genome

scientific article

Simple sequence repeat marker loci discovery using SSR primer

scientific article published on 12 February 2004

Single nucleotide polymorphism discovery from wheat next-generation sequence data.

scientific article

Single nucleotide polymorphism discovery in barley using autoSNPdb

scientific article

Single-Cell Genomic Analysis in Plants.

scientific article published on 22 January 2018

Sixteen new simple sequence repeat markers fromBrassica junceaexpressed sequences and their cross-species amplification

article

Skim-based genotyping by sequencing

scientific article published in January 2015

Speed breeding is a powerful tool to accelerate crop research and breeding

scientific article

Structural variations in plant genomes

scientific article

Studying the Genetic Diversity of Yam Bean Using a New Draft Genome Assembly

scientific article published in 2021

Super-Pangenome by Integrating the Wild Side of a Species for Accelerated Crop Improvement

scientific article published on 29 November 2019

Targeted identification of genomic regions using TAGdb

scientific article

The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes

scientific article

The Genome of a Southern Hemisphere Seagrass Species (Zostera muelleri).

scientific article published on 3 July 2016

The Impact of Genomics Technology on Adapting Plants to Climate Change

article

The application of genomics and bioinformatics to accelerate crop improvement in a changing climate

scientific article

The auxin-induced K(+) channel gene Zmk1 in maize functions in coleoptile growth and is required for embryo development

scientific article published in July 2006

The emergence of molecular profiling and omics techniques in seagrass biology; furthering our understanding of seagrasses.

scientific article published on 21 July 2016

The genome of the mesopolyploid crop species Brassica rapa ⬇️

scientific article (publication date: 28 August 2011)

The genome sequence of the Antarctic bullhead notothen reveals evolutionary adaptations to a cold environment

scientific article

The improved assembly of 7DL chromosome provides insight into the structure and evolution of bread wheat

scientific article published on 18 September 2019

The pangenome of an agronomically important crop plant Brassica oleracea

scientific article published on 11 November 2016

The pangenome of hexaploid bread wheat

scientific article

The reference genetic linkage map for the multinational Brassica rapa genome sequencing project

scientific article published on 24 July 2007

The western Mediterranean region provided the founder population of domesticated narrow-leafed lupin

scientific article published on 17 September 2018

Towards CRISPR/Cas crops - bringing together genomics and genome editing.

scientific article

Towards a more predictable plant breeding pipeline with CRISPR/Cas-induced allelic series to optimize quantitative and qualitative traits

article

Towards plant pangenomics

scientific article

Trait associations in the pangenome of pigeon pea (Cajanus cajan)

scientific article published on 05 February 2020

Transcriptome analysis of Neotyphodium and Epichloë grass endophytes

scientific article published on 22 March 2006

Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea

scientific article

Transcriptomic Changes in Coral Holobionts Provide Insights into Physiological Challenges of Future Climate and Ocean Change

scientific article published on 28 October 2015

Transient Nod factor-dependent gene expression in the nodulation-competent zone of soybean (Glycine max [L.] Merr.) roots.

scientific article

Understanding Host-Pathogen Interactions in Brassica napus in the Omics Era

scientific article published on 10 October 2020

Unfolding the secrets of coral-algal symbiosis

scientific article published on 17 March 2015

Updated guidelines for gene nomenclature in wheat

Variation in abundance of predicted resistance genes in the Brassica oleracea pangenome

scientific article published on 31 May 2018

Wheat Panache: A pangenome graph database representing presence–absence variation across sixteen bread wheat genomes

scientific article published in 2022

WheatGenome.info: An Integrated Database and Portal for Wheat Genome Information

scientific article published on 18 October 2011

Wild Origins of Macadamia Domestication Identified Through Intraspecific Chloroplast Genome Sequencing

scientific article published on 21 March 2019

runBNG: A software package for BioNano genomic analysis on the command line

scientific article published on 9 June 2017

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