List of works - Rui Jiang

A method for scoring the cell type-specific impacts of noncoding variants in personal genomes

scientific article published on 17 August 2020

A random forest approach to the detection of epistatic interactions in case-control studies

scientific article

A sequence-based method to predict the impact of regulatory variants using random forest

scientific article

Align human interactome with phenome to identify causative genes and networks underlying disease families.

scientific article published on 13 November 2008

An association analysis between psychophysical characteristics and genome-wide gene expression changes in human adaptation to the extreme climate at the Antarctic Dome Argus

scientific article published on 09 September 2014

Chromatin accessibility prediction via convolutional long short-term memory networks with k-mer embedding

scientific article published on July 2017

Clustering 16S rRNA for OTU prediction: a method of unsupervised Bayesian clustering ⬇️

scientific article published on January 13, 2011

Computational systems biology

scientific article published on 12 March 2013

Constructing a gene semantic similarity network for the inference of disease genes

scientific article

Construction and Analysis of Functional Networks in the Gut Microbiome of Type 2 Diabetes Patients

scientific article

Detecting epistatic interactions in metagenome-wide association studies by metaBOOST.

scientific article

DomainRBF: a Bayesian regression approach to the prioritization of candidate domains for complex diseases ⬇️

scientific article published on April 19, 2011

Epistatic module detection for case-control studies: a Bayesian model with a Gibbs sampling strategy

scientific article

Evaluation of next-generation sequencing software in mapping and assembly

scientific article published on 28 April 2011

From Ontology to Semantic Similarity: Calculation of Ontology‐Based Semantic Similarity ⬇️

scientific article published on February 28, 2013

Gene co-opening network deciphers gene functional relationships

scientific article published on 4 October 2017

Global inference of disease-causing single nucleotide variants from exome sequencing data

scientific article

Identification of disease-related nsSNPs via the integration of protein sequence features and domain-domain interaction data.

scientific article

Identifying potential cancer driver genes by genomic data integration ⬇️

scientific article published on December 18, 2013

Inferring non-synonymous single-nucleotide polymorphisms-disease associations via integration of multiple similarity networks

scientific article published in April 2014

Integrated approach in systems biology

scientific article published on 31 December 2014

Integrating human omics data to prioritize candidate genes

scientific article (publication date: 18 December 2013)

Integrating multiple genomic data to predict disease-causing nonsynonymous single nucleotide variants in exome sequencing studies

scientific article

Leveraging multiple genomic data to prioritize disease-causing indels from exome sequencing data.

scientific article

Mimvec: a deep learning approach for analyzing the human phenome

scientific article published on 21 September 2017

Modeling the causal regulatory network by integrating chromatin accessibility and transcriptome data

scientific article

Network motif identification in stochastic networks

scholarly article

Network-based global inference of human disease genes

scientific article published on 6 May 2008

Pinpointing disease genes through phenomic and genomic data fusion.

scientific article

Predicting enhancers with deep convolutional neural networks.

scientific article published in December 2017

Predicting transcription factor binding motifs from DNA-binding domains, chromatin accessibility and gene expression data

scientific article

Prioritisation of associations between protein domains and complex diseases using domain-domain interaction networks

scientific article published in May 2010

Prioritisation of candidate Single Amino Acid Polymorphisms using one-class learning machines

scientific article published on 24 December 2011

Prioritization Of Nonsynonymous Single Nucleotide Variants For Exome Sequencing Studies Via Integrative Learning On Multiple Genomic Data

scientific article

Prioritizing protein complexes implicated in human diseases by network optimization

scientific article

PyroHMMsnp: an SNP caller for Ion Torrent and 454 sequencing data.

scientific article

PyroHMMvar: a sensitive and accurate method to call short indels and SNPs for Ion Torrent and 454 data.

scientific article

Reconstructing cell cycle pseudo time-series via single-cell transcriptome data

scientific article

Searching for interpretable rules for disease mutations: a simulated annealing bump hunting strategy

scientific article published on 19 September 2006

Sequence-based prioritization of nonsynonymous single-nucleotide polymorphisms for the study of disease mutations

scientific article

Systematic characterization and prediction of post-translational modification cross-talk.

scientific article

The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models

scientific article

Walking on a tissue-specific disease-protein-complex heterogeneous network for the discovery of disease-related protein complexes

scientific article (publication date: 2013)

Walking on multiple disease-gene networks to prioritize candidate genes

scientific article published on 13 February 2015

dbWGFP: a database and web server of human whole-genome single nucleotide variants and their functional predictions

scientific article published on 17 March 2016

List of works by Rui Jiang

A method for scoring the cell type-specific impacts of noncoding variants in personal genomes

A random forest approach to the detection of epistatic interactions in case-control studies

A sequence-based method to predict the impact of regulatory variants using random forest

Align human interactome with phenome to identify causative genes and networks underlying disease families.

An association analysis between psychophysical characteristics and genome-wide gene expression changes in human adaptation to the extreme climate at the Antarctic Dome Argus

Chromatin accessibility prediction via convolutional long short-term memory networks with k-mer embedding

Clustering 16S rRNA for OTU prediction: a method of unsupervised Bayesian clustering ⬇️

Computational systems biology

Constructing a gene semantic similarity network for the inference of disease genes

Construction and Analysis of Functional Networks in the Gut Microbiome of Type 2 Diabetes Patients

Detecting epistatic interactions in metagenome-wide association studies by metaBOOST.

DomainRBF: a Bayesian regression approach to the prioritization of candidate domains for complex diseases ⬇️

Epistatic module detection for case-control studies: a Bayesian model with a Gibbs sampling strategy

Evaluation of next-generation sequencing software in mapping and assembly

From Ontology to Semantic Similarity: Calculation of Ontology‐Based Semantic Similarity ⬇️

Gene co-opening network deciphers gene functional relationships

Global inference of disease-causing single nucleotide variants from exome sequencing data

Identification of disease-related nsSNPs via the integration of protein sequence features and domain-domain interaction data.

Identifying potential cancer driver genes by genomic data integration ⬇️

Inferring non-synonymous single-nucleotide polymorphisms-disease associations via integration of multiple similarity networks

Integrated approach in systems biology

Integrating human omics data to prioritize candidate genes

Integrating multiple genomic data to predict disease-causing nonsynonymous single nucleotide variants in exome sequencing studies

Leveraging multiple genomic data to prioritize disease-causing indels from exome sequencing data.

Mimvec: a deep learning approach for analyzing the human phenome

Modeling the causal regulatory network by integrating chromatin accessibility and transcriptome data

Network motif identification in stochastic networks

Network-based global inference of human disease genes

Pinpointing disease genes through phenomic and genomic data fusion.

Predicting enhancers with deep convolutional neural networks.

Predicting transcription factor binding motifs from DNA-binding domains, chromatin accessibility and gene expression data

Prioritisation of associations between protein domains and complex diseases using domain-domain interaction networks

Prioritisation of candidate Single Amino Acid Polymorphisms using one-class learning machines

Prioritization Of Nonsynonymous Single Nucleotide Variants For Exome Sequencing Studies Via Integrative Learning On Multiple Genomic Data

Prioritizing protein complexes implicated in human diseases by network optimization

PyroHMMsnp: an SNP caller for Ion Torrent and 454 sequencing data.

PyroHMMvar: a sensitive and accurate method to call short indels and SNPs for Ion Torrent and 454 data.

Reconstructing cell cycle pseudo time-series via single-cell transcriptome data

Searching for interpretable rules for disease mutations: a simulated annealing bump hunting strategy

Sequence-based prioritization of nonsynonymous single-nucleotide polymorphisms for the study of disease mutations

Systematic characterization and prediction of post-translational modification cross-talk.

The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models

Walking on a tissue-specific disease-protein-complex heterogeneous network for the discovery of disease-related protein complexes

Walking on multiple disease-gene networks to prioritize candidate genes

dbWGFP: a database and web server of human whole-genome single nucleotide variants and their functional predictions