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List of works by Areejit Samal

A preference for link operator functions can drive Boolean biological networks towards critical dynamics

scholarly article

Advances in the integration of transcriptional regulatory information into genome-scale metabolic models.

scientific article

Analysis of the hierarchical structure of the B. subtilis transcriptional regulatory network

scientific article published on 19 January 2015

Biologically meaningful regulatory logic enhances the convergence rate in Boolean networks and bushiness of their state transition graph

scientific article published on 19 July 2023

Challenges in experimental data integration within genome-scale metabolic models

scientific article

Cloning and targeted disruption of two lipopolysaccharide biosynthesis genes, kdsA and waaG, of Pseudomonas aeruginosa PAO1 by site-directed mutagenesis

scientific journal article

Comparative Proteomic Analyses of Avirulent, Virulent, and Clinical Strains of Mycobacterium tuberculosis Identify Strain-specific Patterns

scientific article published on 05 May 2016

Comparative analysis of two discretizations of Ricci curvature for complex networks.

scientific article

Comparative systems analysis of the secretome of the opportunistic pathogen Aspergillus fumigatus and other Aspergillus species

scientific article published on 26 April 2018

Degree difference: a simple measure to characterize structural heterogeneity in complex networks

scientific article published on 07 December 2020

Edge-based analysis of networks: curvatures of graphs and hypergraphs

scientific article published on 20 November 2020

Environmental versatility promotes modularity in genome-scale metabolic networks

scientific article

Flux-based classification of reactions reveals a functional bow-tie organization of complex metabolic networks.

scientific article published on 14 May 2013

Genotype networks in metabolic reaction spaces

scientific article

Hopf bifurcation in the evolution of networks driven by spike-timing-dependent plasticity ⬇️

scientific article published on November 6, 2012

IMPPAT: A curated database of Indian Medicinal Plants, Phytochemistry And Therapeutics

scientific article published on 12 March 2018

In Silico Identification of Potential Natural Product Inhibitors of Human Proteases Key to SARS-CoV-2 Infection

scientific article published on 22 August 2020

Leveraging Developmental Landscapes for Model Selection in Boolean Gene Regulatory Networks

preprint

Leveraging developmental landscapes for model selection in Boolean gene regulatory networks

scholarly article

Low degree metabolites explain essential reactions and enhance modularity in biological networks.

scientific article

MeFSAT: a curated natural product database specific to secondary metabolites of medicinal fungi

scientific article published on 12 January 2021

Minimum complexity drives regulatory logic in Boolean models of living systems

scholarly article

Network function shapes network structure: the case of the Arabidopsis flower organ specification genetic network

scientific article published on 12 April 2013

Network reconstruction and systems analysis of plant cell wall deconstruction by Neurospora crassa.

scientific article published on 21 September 2017

Persistent homology of unweighted complex networks via discrete Morse theory

scientific article published on 25 September 2019

Phenotypic constraints promote latent versatility and carbon efficiency in metabolic networks. ⬇️

scientific article published on 14 July 2015

Preponderance of generalized chain functions in reconstructed Boolean models of biological networks

scientific article published on 10 October 2023

Randomizing Genome-Scale Metabolic Networks ⬇️

scientific article published on July 14, 2011

Relative stability of network states in Boolean network models of gene regulation in development.

scientific article published on 07 March 2016

Reprogramming of microRNA expression via E2F1 downregulation promotes Salmonella infection both in infected and bystander cells

scientific article published on 07 June 2021

Shining fresh light on the evolution of photosynthesis

scientific article published on 28 September 2013

Statistical Physics Methods Provide the Exact Solution to a Long-Standing Problem of Genetics ⬇️

scientific article published on 9 June 2015

Targeting multiple targets in Pseudomonas aeruginosa PAO1 using flux balance analysis of a reconstructed genome-scale metabolic network

scientific article published on 16 March 2010

The regulatory network of E. coli metabolism as a Boolean dynamical system exhibits both homeostasis and flexibility of response

scientific article

ViCEKb: Vitiligo-linked Chemical Exposome Knowledgebase

scientific article published on 13 October 2023

Virtual screening of phytochemicals from Indian medicinal plants against the endonuclease domain of SFTS virus L polymerase

scientific article published on 22 February 2022

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