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List of works by Michael Freeling

A Maize Thiamine Auxotroph Is Defective in Shoot Meristem Maintenance ⬇️

scientific article published on October 22, 2010

A Solution to the C-Value Paradox and the Function of Junk DNA: The Genome Balance Hypothesis.

scientific article published on 3 March 2015

A position effect on the heritability of epigenetic silencing

scientific article

Abundant expression of maternal siRNAs is a conserved feature of seed development

scientific article published on 15 June 2020

Advances in understanding cis regulation of the plant gene with an emphasis on comparative genomics.

scientific article published on 3 August 2015

Altered patterns of fractionation and exon deletions in Brassica rapa support a two-step model of paleohexaploidy

scientific article published on 2 February 2012

Analysis of genetic mosaics shows that the extra epidermal cell divisions in Knotted mutant maize plants are induced by adjacent mesophyll cells

scientific article published in Nature

Arabidopsis intragenomic conserved noncoding sequence

scholarly article

Author Correction: Origin and evolution of the octoploid strawberry genome

scientific article published on 01 April 2019

Automated conserved non-coding sequence (CNS) discovery reveals differences in gene content and promoter evolution among grasses

scientific article published on 02 July 2013

Bias in plant gene content following different sorts of duplication: tandem, whole-genome, segmental, or by transposition

scientific article published on January 2009

Biodiversity (Communications arising): maize transgene results in Mexico are artefacts

scientific article (publication date: 11 April 2002)

Co-option of the polarity gene network shapes filament morphology in angiosperms

scientific article

Combinatorial control of meristem identity in maize inflorescences

scientific article

Conservation and molecular dissection of ROUGH SHEATH2 and ASYMMETRIC LEAVES1 function in leaf development

scientific article

Conserved non-coding regulatory signatures in Arabidopsis co-expressed gene modules

scientific article

Conserved noncoding sequences (CNSs) in higher plants

scientific article

Conserved noncoding sequences in the grasses

scientific article

Correction: A Position Effect on the Heritability of Epigenetic Silencing.

scientific article published on 13 February 2009

Different Gene Families inArabidopsis thalianaTransposed in Different Epochs and at Different Frequencies throughout the Rosids ⬇️

scientific article published on December 16, 2011

Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss

scientific article

Dose-sensitivity, conserved non-coding sequences, and duplicate gene retention through multiple tetraploidies in the grasses

scientific article

Epigenetic regulation of subgenome dominance following whole genome triplication in Brassica rapa.

scientific article published on 12 February 2016

Epigenetic reprogramming during vegetative phase change in maize ⬇️

scientific article published on December 6, 2010

Escape from preferential retention following repeated whole genome duplications in plants

scientific article published on 15 May 2012

Evidence of function for conserved noncoding sequences in Arabidopsis thaliana ⬇️

scientific article published on September 28, 2011

Expression of a mutant maize gene in the ventral leaf epidermis is sufficient to signal a switch of the leaf's dorsoventral axis.

scientific article

Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure.

scientific article published on 19 December 2017

FAIR: A Call to Make Published Data More Findable, Accessible, Interoperable, and Reusable

scientific article published on 01 August 2018

Finding and comparing syntenic regions among Arabidopsis and the outgroups papaya, poplar, and grape: CoGe with rosids

scientific article

Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes

scientific article published on 7 June 2006

Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homologs.

scientific article

Fractionation and subfunctionalization following genome duplications: mechanisms that drive gene content and their consequences

scientific article

Fractionation mutagenesis and similar consequences of mechanisms removing dispensable or less-expressed DNA in plants

scientific article

G-boxes, bigfoot genes, and environmental response: characterization of intragenomic conserved noncoding sequences in Arabidopsis

scientific article published on 11 May 2007

Gene retention, fractionation and subgenome differences in polyploid plants

scientific article published on 30 April 2018

Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity

scientific article published on July 2006

Genes identified by visible mutant phenotypes show increased bias toward one of two subgenomes of maize

scientific article

Genome-wide analysis of syntenic gene deletion in the grasses

scientific article (publication date: 2012)

Genomic duplication, fractionation and the origin of regulatory novelty

scientific article

Gobe: an interactive, web-based tool for comparative genomic visualization

scientific article

Grains of knowledge: genomics of model cereals

scientific article

Heritable epigenetic variation among maize inbreds

scientific article

Heritable transposon silencing initiated by a naturally occurring transposon inverted duplication

scientific article published on 22 May 2005

High-resolution mapping of open chromatin in the rice genome

scientific article published on 22 November 2011

Horizontal transfer of a plant transposon

scientific article

How to usefully compare homologous plant genes and chromosomes as DNA sequences

scientific article published on February 2008

Initiation, establishment, and maintenance of heritable MuDR transposon silencing in maize are mediated by distinct factors

scientific article published in October 2006

Inna Golubovskaya: The Life of a Geneticist Studying Meiosis ⬇️

scientific article published on July 1, 2011

Insights from the comparison of plant genome sequences

scientific article published on January 2010

Long identical multispecies elements in plant and animal genomes

scientific article

Many or most genes in Arabidopsis transposed after the origin of the order Brassicales

scientific article published on 03 October 2008

Maternal components of RNA-directed DNA methylation are required for seed development in Brassica rapa

article

Mosaic analysis of extended auricle1 (eta1) suggests that a two-way signaling pathway is involved in positioning the blade/sheath boundary in Zea mays

scientific article published on 8 May 2006

Mu killer Causes the Heritable Inactivation of the Mutator Family of Transposable Elements in Zea mays ⬇️

scientific article published on October 1, 2003

Origin and evolution of the octoploid strawberry genome

scientific article published on 25 February 2019

Origin, inheritance, and gene regulatory consequences of genome dominance in polyploids

scientific article published on 24 March 2014

Picking up the Ball at the K/Pg Boundary: The Distribution of Ancient Polyploidies in the Plant Phylogenetic Tree as a Spandrel of Asexuality with Occasional Sex.

scientific article published on 17 February 2017

Regulation and a conserved intron sequence of liguleless3/4 knox class-I homeobox genes in grasses

scientific article

Regulatory mutants of the maize Adh1 gene caused by DNA insertions

scientific article published in Nature

Screening synteny blocks in pairwise genome comparisons through integer programming

scientific article

Single-molecule sequencing of the desiccation-tolerant grass Oropetium thomaeum

scientific article published on 11 November 2015

The Brassica genome ⬇️

scientific article published on May 30, 2013

The Fate of Arabidopsis thaliana Homeologous CNSs and Their Motifs in the Paleohexaploid Brassica rapa ⬇️

scientific article published on January 1, 2013

The Sorghum bicolor genome and the diversification of grasses

scientific article

The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus).

scientific article

The evolution of a high copy gene array in Arabidopsis

scientific article

The extended auricle1 (eta1) gene is essential for the genetic network controlling postinitiation maize leaf development

scientific article published on November 2003

The genome of the mesopolyploid crop species Brassica rapa ⬇️

scientific article (publication date: 28 August 2011)

The mop1 (mediator of paramutation1) mutant progressively reactivates one of the two genes encoded by the MuDR transposon in maize

scientific article

The most deeply conserved noncoding sequences in plants serve similar functions to those in vertebrates despite large differences in evolutionary rates

scientific article (publication date: March 2014)

The pineapple genome and the evolution of CAM photosynthesis

scientific article published on 2 November 2015

Tissue-Specific Accumulation of MURB, a Protein Encoded by MuDR, the Autonomous Regulator of the Mutator Transposable Element Family

scientific article published in 1995

Transposed genes in Arabidopsis are often associated with flanking repeats

scientific article

Two evolutionarily distinct classes of paleopolyploidy

scientific article published in December 2013

Unequal redundancy in maize knotted1 homeobox genes

scientific article

Using Genomic Sequencing for Classical Genetics in E. coli K12 ⬇️

scientific article published on February 25, 2011

Utility and distribution of conserved noncoding sequences in the grasses

scientific article

ZmDB, an integrated database for maize genome research

scientific article

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