List of works - Jianyi Yang

A comparative assessment and analysis of 20 representative sequence alignment methods for protein structure prediction.

scientific article

A small shared epitope-mimetic compound potently accelerates osteoclast-mediated bone damage in autoimmune arthritis

scientific article published on 24 July 2013

An ensemble approach to protein fold classification by integration of template-based assignment and support vector machine classifier

scientific article

An improved classification of G-protein-coupled receptors using sequence-derived features.

scientific article

Antimicrobial Activity of Chemokine CXCL10 for Dermal and Oral Microorganisms

scientific article

BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions

scientific article

COFACTOR: an accurate comparative algorithm for structure-based protein function annotation

scientific article

Constructing consensus genetic maps in comparative analysis

scientific article published on 20 October 2010

Correlations between designability and various structural characteristics of protein lattice models

scientific article published in May 2007

GLASS: a comprehensive database for experimentally validated GPCR-ligand associations

scientific article

GPCR-I-TASSER: A Hybrid Approach to G Protein-Coupled Receptor Structure Modeling and the Application to the Human Genome

scientific article

Histatin 5 binds to Porphyromonas gingivalis hemagglutinin B (HagB) and alters HagB-induced chemokine responses

scientific article published on 29 January 2014

Human Pol II promoter recognition based on primary sequences and free energy of dinucleotides.

scientific article published on 24 February 2008

I-TASSER server: new development for protein structure and function predictions

scientific article

Identification of partially linear structure in additive models with an application to gene expression prediction from sequences.

scientific article published on 23 September 2011

Improved protein structure prediction using predicted interresidue orientations

scientific article published on 02 January 2020

Improving Sequence-Based Prediction of Protein-Peptide Binding Residues by Introducing Intrinsic Disorder and a Consensus Method

scientific article published on 25 June 2018

Improving taxonomy-based protein fold recognition by using global and local features.

scientific article published on 2 May 2011

In various protein complexes, disordered protomers have large per-residue surface areas and area of protein-, DNA- and RNA-binding interfaces

scientific article published on 19 August 2015

Integration of QUARK and I-TASSER for Ab Initio Protein Structure Prediction in CASP11.

scientific article

PLMSearch: Protein language model powers accurate and fast sequence search for remote homology

scientific article published in 2024

Prediction of protein structural classes by recurrence quantification analysis based on chaos game representation

scientific article published on 8 January 2009

Protein Structure and Function Prediction Using I-TASSER

scientific article

Protein-ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment

scientific article

Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions

scientific article published in 2024

ResQ: An Approach to Unified Estimation of B-Factor and Residue-Specific Error in Protein Structure Prediction.

scientific article

Structural and Sequence Similarity Makes a Significant Impact on Machine-Learning-Based Scoring Functions for Protein-Ligand Interactions

scientific article published on 30 March 2017

Super Spy variants implicate flexibility in chaperone action

scientific article published on 04 February 2014

Template-based protein structure prediction in CASP11 and retrospect of I-TASSER in the last decade.

scientific article

The I-TASSER Suite: protein structure and function prediction.

scientific article

List of works by Jianyi Yang

A comparative assessment and analysis of 20 representative sequence alignment methods for protein structure prediction.

A small shared epitope-mimetic compound potently accelerates osteoclast-mediated bone damage in autoimmune arthritis

An ensemble approach to protein fold classification by integration of template-based assignment and support vector machine classifier

An improved classification of G-protein-coupled receptors using sequence-derived features.

Antimicrobial Activity of Chemokine CXCL10 for Dermal and Oral Microorganisms

BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions

COFACTOR: an accurate comparative algorithm for structure-based protein function annotation

Constructing consensus genetic maps in comparative analysis

Correlations between designability and various structural characteristics of protein lattice models

GLASS: a comprehensive database for experimentally validated GPCR-ligand associations

GPCR-I-TASSER: A Hybrid Approach to G Protein-Coupled Receptor Structure Modeling and the Application to the Human Genome

Histatin 5 binds to Porphyromonas gingivalis hemagglutinin B (HagB) and alters HagB-induced chemokine responses

Human Pol II promoter recognition based on primary sequences and free energy of dinucleotides.

I-TASSER server: new development for protein structure and function predictions

Identification of partially linear structure in additive models with an application to gene expression prediction from sequences.

Improved protein structure prediction using predicted interresidue orientations

Improving Sequence-Based Prediction of Protein-Peptide Binding Residues by Introducing Intrinsic Disorder and a Consensus Method

Improving taxonomy-based protein fold recognition by using global and local features.

In various protein complexes, disordered protomers have large per-residue surface areas and area of protein-, DNA- and RNA-binding interfaces

Integration of QUARK and I-TASSER for Ab Initio Protein Structure Prediction in CASP11.

PLMSearch: Protein language model powers accurate and fast sequence search for remote homology

Prediction of protein structural classes by recurrence quantification analysis based on chaos game representation

Protein Structure and Function Prediction Using I-TASSER

Protein-ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment

Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions

ResQ: An Approach to Unified Estimation of B-Factor and Residue-Specific Error in Protein Structure Prediction.

Structural and Sequence Similarity Makes a Significant Impact on Machine-Learning-Based Scoring Functions for Protein-Ligand Interactions

Super Spy variants implicate flexibility in chaperone action

Template-based protein structure prediction in CASP11 and retrospect of I-TASSER in the last decade.

The I-TASSER Suite: protein structure and function prediction.