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List of works by Zhongying Zhao

A Genome-wide hybrid incompatibility landscape between Caenorhabditis briggsae and C. nigoni

scientific article

A negative regulatory loop between microRNA and Hox gene controls posterior identities in Caenorhabditis elegans

scientific article

A novel cell nuclei segmentation method for 3D C. elegans embryonic time-lapse images

scientific article

ATP-binding cassette protein E is involved in gene transcription and translation in Caenorhabditis elegans.

scientific article published in October 2004

Automated analysis of embryonic gene expression with cellular resolution in C. elegans.

scientific article published on 29 June 2008

Boolean genetic network model for the control of C. elegans early embryonic cell cycles

scientific article

CMGRN: a web server for constructing multilevel gene regulatory networks using ChIP-seq and gene expression data.

scientific article

Collaborative regulation of development but independent control of metabolism by two epidermis-specific transcription factors in Caenorhabditis elegans

scientific article published on 06 October 2013

Comparative analysis of embryonic cell lineage between Caenorhabditis briggsae and Caenorhabditis elegans

scientific article

Comparative mitochondrial genomics reveals a possible role of a recent duplication of NADH dehydrogenase subunit 5 in gene regulation

scientific article published on 01 December 2018

Comparative proteome analysis between C . briggsae embryos and larvae reveals a role of chromatin modification proteins in embryonic cell division.

scientific article published on 27 June 2017

Computable early Caenorhabditis elegans embryo with a phase field model

scientific article published on 14 January 2022

Control of cell cycle timing during C. elegans embryogenesis

scientific article published on 13 March 2008

DDGni: dynamic delay gene-network inference from high-temporal data using gapped local alignment.

scientific article

Description of Caenorhabditis sinica sp. n. (Nematoda: Rhabditidae), a nematode species used in comparative biology for C. elegans

scientific article

Direct full-length RNA sequencing reveals unexpected transcriptome complexity during Caenorhabditis elegans development

scientific article published on 05 February 2020

Distinct regulatory elements mediate similar expression patterns in the excretory cell of Caenorhabditis elegans

scientific article published on 13 September 2005

Dynamic regulation of genetic pathways and targets during aging in Caenorhabditis elegans

scientific article

Establishment of Signaling Interactions with Cellular Resolution for Every Cell Cycle of Embryogenesis.

scientific article published on 22 March 2018

Establishment of a morphological atlas of the Caenorhabditis elegans embryo using deep-learning-based 4D segmentation

scientific article published on 07 December 2020

Expression analysis of ABC transporters reveals differential functions of tandemly duplicated genes in Caenorhabditis elegans

scientific article published in November 2004

Formation of artificial chromosomes in Caenorhabditis elegans and analyses of their segregation in mitosis, DNA sequence composition and holocentromere organization

scientific article published on 01 September 2021

Genomic architecture of 5S rDNA cluster and its variations within and between species

scientific article published on 27 March 2022

Genomic basis of recombination suppression in the hybrid between Caenorhabditis briggsae and C. nigoni.

scientific article published on 9 January 2018

High-throughput in vivo analysis of gene expression in Caenorhabditis elegans

scientific article

Identification of a nematode chemosensory gene family

scientific article

Illumina Synthetic Long Read Sequencing Allows Recovery of Missing Sequences even in the "Finished" C. elegans Genome

scientific article

Inference of cellular level signaling networks using single-cell gene expression data in Caenorhabditis elegans reveals mechanisms of cell fate specification

scientific article

Mitochondrial genome of Caenorhabditis nigoni (Rhabditida: Rhabditidae).

scientific article published on 5 March 2015

Multidimensional regulation of gene expression in the C. elegans embryo

scientific article published on 16 April 2012

New insights into Arabidopsis transcriptome complexity revealed by direct sequencing of native RNAs

scientific article published on 11 July 2020

New tools for investigating the comparative biology of Caenorhabditis briggsae and C. elegans

scientific article

PTHGRN: unraveling post-translational hierarchical gene regulatory networks using PPI, ChIP-seq and gene expression data.

scientific article

PlaMoM: a comprehensive database compiles plant mobile macromolecules.

scientific article published on 24 October 2016

Specific Interactions Between Autosome and X Chromosomes Cause Hybrid Male Sterility in Caenorhabditis Species

scientific article published on 07 May 2019

Specific down-regulation of spermatogenesis genes targeted by 22G RNAs in hybrid sterile males associated with an X-Chromosome introgression

scientific article published on 18 May 2016

Systems-level quantification of division timing reveals a common genetic architecture controlling asynchrony and fate asymmetry

scientific article published on 10 June 2015

The ABC transporter gene family of Caenorhabditis elegans has implications for the evolutionary dynamics of multidrug resistance in eukaryotes

scientific article

The comprehensive transcriptional analysis in Caenorhabditis elegans by integrating ChIP-seq and gene expression data

scientific article

Timing of Tissue-specific Cell Division Requires a Differential Onset of Zygotic Transcription during Metazoan Embryogenesis

scientific article

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