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List of works by Matúš Kalaš

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains

scientific article (publication date: 5 February 2014)

BioXSD: the common data-exchange format for everyday bioinformatics web services

scientific article

Community curation of bioinformatics software and data resources

scientific article published on 16 October 2019

Community-driven development for computational biology at Sprints, Hackathons and Codefests

scientific article

EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats

scientific article

Enhancing the image analysis community in Galaxy

FreeContact: fast and free software for protein contact prediction from residue co-evolution

scientific article (publication date: 26 March 2014)

How to improve the annotation of Galaxy resources? Outcomes of an online hackathon for improving the annotation of Galaxy resources for microbial data resources

How to increase the findability, visibility, and impact of Galaxy tools for your scientific community

Identifying elemental genomic track types and representing them uniformly

scientific article

Interoperable Semantic Web services (Tutorials)

scientific article published on 19 January 2011

Norwegian e-Infrastructure for Life Sciences (NeLS)

Perspectives on automated composition of workflows in the life sciences

scientific article

ReGaTE: Registration of Galaxy Tools in Elixir.

scientific article published on 10 April 2017

Robust Cross-Platform Workflows: How Technical and Scientific Communities Collaborate to Develop, Test and Share Best Practices for Data Analysis

Synergising ELIXIR resources for training in systems biology

The ELIXIR Biodiversity Community: Understanding short- and long-term changes in biodiversity

scientific article published on 22 May 2024

The EMBRACE web service collection

scientific article (publication date: July 2010)

The Genomic HyperBrowser: an analysis web server for genome-scale data

scientific article

The bio.tools registry of software tools and data resources for the life sciences

article

The future of food and nutrition in ELIXIR

scientific article published on 25 August 2022

Tools and data services registry: a community effort to document bioinformatics resources

scientific article

Using registries to integrate bioinformatics tools and services into workbench environments

Workshop on laboratory protocol standards for the Molecular Methods Database

scientific article

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