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List of works by Caroline C Friedel

4-thiouridine inhibits rRNA synthesis and causes a nucleolar stress response

scientific article

A comprehensive evaluation of alignment algorithms in the context of RNA-seq

scientific article

A systematic analysis of host factors reveals a Med23-interferon-λ regulatory axis against herpes simplex virus type 1 replication

scientific article

Analysis of intraviral protein-protein interactions of the SARS coronavirus ORFeome

scientific article

Calpain-mediated cleavage of collapsin response mediator protein-2 drives acute axonal degeneration

scientific article

Clonal expansion analysis of transposon insertions by high-throughput sequencing identifies candidate cancer genes in a PiggyBac mutagenesis screen

scientific article

Computational analysis of virus-host interactomes.

scientific article published on January 2013

Deciphering the modulation of gene expression by type I and II interferons combining 4sU-tagging, translational arrest and in silico promoter analysis.

scientific article published on 05 July 2013

Evolutionarily conserved herpesviral protein interaction networks

scientific article

FERN - a Java framework for stochastic simulation and evaluation of reaction networks

scientific article

FERN – Stochastic Simulation and Evaluation of Reaction Networks

Genome-Wide Assessment of AU-Rich Elements by the AREScore Algorithm ⬇️

scientific article published on January 5, 2012

HALO--a Java framework for precise transcript half-life determination.

scientific article

HSV-1-induced disruption of transcription termination resembles a cellular stress response but selectively increases chromatin accessibility downstream of genes.

scientific article published on 26 March 2018

Herpes simplex virus blocks host transcription termination via the bimodal activities of ICP27

scientific article published on 15 January 2020

High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay

scientific article published on 24 July 2008

Identifying the topology of protein complexes from affinity purification assays

scientific article

Inferring topology from clustering coefficients in protein-protein interaction networks

scientific article

Influence of degree correlations on network structure and stability in protein-protein interaction networks

scientific article

Integrative functional genomics decodes herpes simplex virus 1

scientific article published on 27 April 2020

Metabolic tagging and purification of nascent RNA: implications for transcriptomics.

scientific article published on 26 August 2009

Microglia and macrophages promote corralling, wound compaction and recovery after spinal cord injury via Plexin-B2

scientific article published on 01 March 2020

Mining RNA-seq data for infections and contaminations

scientific article

Plexin-B2 facilitates glioblastoma infiltration by modulating cell biomechanics

scientific article published on 29 January 2021

Prediction of Poly(A) Sites by Poly(A) Read Mapping

scientific article

ProCope--protein complex prediction and evaluation

scientific article

Quantitative proteomics of the integrin adhesome show a myosin II‐dependent recruitment of LIM domain proteins ⬇️

scientific article published on February 11, 2011

RC3H1 post-transcriptionally regulates A20 mRNA and modulates the activity of the IKK/NF-κB pathway

scientific article published on 14 July 2015

Rapid Genome-wide Recruitment of RNA Polymerase II Drives Transcription, Splicing, and Translation Events during T Cell Responses.

scientific article published on April 2017

Real-time Analysis of Transcription Factor Binding, Transcription, Translation, and Turnover to Display Global Events During Cellular Activation

scientific article published on 7 March 2018

Reliable gene signatures for microarray classification: assessment of stability and performance

scientific article published on 31 July 2006

Support vector machines for separation of mixed plant-pathogen EST collections based on codon usage.

scientific article published on 7 December 2004

Systematic analysis of viral and cellular microRNA targets in cells latently infected with human gamma-herpesviruses by RISC immunoprecipitation assay

scientific article published on April 2010

The Hepatitis E virus intraviral interactome

scientific article

The SARS-coronavirus-host interactome: identification of cyclophilins as target for pan-coronavirus inhibitors

scientific article

Time-resolved single-cell RNA-seq using metabolic RNA labelling

scientific article published on 29 September 2022

Toward the complete interactome.

scientific article

Transcriptome analysis of dominant-negative Brd4 mutants identifies Brd4-specific target genes of small molecule inhibitor JQ1.

scientific article published on 10 May 2017

Virus-host interactomes and global models of virus-infected cells.

scientific article published on 18 August 2011

Watchdog - a workflow management system for the distributed analysis of large-scale experimental data

scientific article published on 13 March 2018

Widespread disruption of host transcription termination in HSV-1 infection.

scientific article published on 20 May 2015

Women in the European Virus Bioinformatics Center

scientific article published on 13 July 2022

p53-Regulated Networks of Protein, mRNA, miRNA, and lncRNA Expression Revealed by Integrated Pulsed Stable Isotope Labeling With Amino Acids in Cell Culture (pSILAC) and Next Generation Sequencing (NGS) Analyses

scientific article

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