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List of works by Chen Li

A new class of protein biomarkers based on subcellular distribution: application to a mouse liver cancer model

scientific article published on 06 May 2019

ColistinDose, a Mobile App for Determining Intravenous Dosage Regimens of Colistimethate in Critically Ill Adult Patients: Clinician-Centered Design and Development Study

scientific article published on 16 December 2020

Comprehensive assessment and performance improvement of effector protein predictors for bacterial secretion systems III, IV and VI.

scientific article

Correction: ColistinDose, a Mobile App for Determining Intravenous Dosage Regimens of Colistimethate in Critically Ill Adult Patients: Clinician-Centered Design and Development Study

scientific article published on 18 December 2020

Critical evaluation of in silico methods for prediction of coiled-coil domains in proteins.

scientific article published on 15 July 2015

GlycoMine(struct): a new bioinformatics tool for highly accurate mapping of the human N-linked and O-linked glycoproteomes by incorporating structural features

scientific article published on 06 October 2016

GlycoMine: a machine learning-based approach for predicting N-, C- and O-linked glycosylation in the human proteome

scientific article published on 6 January 2015

HIVed, a knowledgebase for differentially expressed human genes and proteins during HIV infection, replication and latency

scientific article

KinetochoreDB: a comprehensive online resource for the kinetochore and its related proteins.

scientific article published on 17 March 2016

Knowledge-transfer learning for prediction of matrix metalloprotease substrate-cleavage sites

scientific article

MERITS: a web-based integrated <i>Mycobacterial</i> PE/PPE protein database

scientific article published in 2024

MHCpLogics: an interactive machine learning-based tool for unsupervised data visualization and cluster analysis of immunopeptidomes

scientific article published in 2024

Pan-transcriptomic analysis identified common differentially expressed genes of Acinetobacter baumannii in response to polymyxin treatments

scientific article published on 29 May 2020

PolyQ 2.0: an improved version of PolyQ, a database of human polyglutamine proteins

scientific article published on 15 March 2016

Resourcing, annotating, and analysing synthetic peptides of SARS-CoV-2 for immunopeptidomics and other immunological studies

scientific article published on 14 April 2021

Response to Comment on "A subset of HLA-I peptides are not genomically templated: Evidence for cis- and trans-spliced peptide ligands"

scientific article published on 01 August 2019

SPAR: a random forest-based predictor for self-interacting proteins with fine-grained domain information

scientific article

SecretEPDB: a comprehensive web-based resource for secreted effector proteins of the bacterial types III, IV and VI secretion systems

scientific article published on 23 January 2017

The α-importome of mammalian germ cell maturation provides novel insights for importin biology.

scientific article published on 30 April 2014

csORF-finder: an effective ensemble learning framework for accurate identification of multi-species coding short open reading frames

scientific article published in 2022

ggVolcanoR: A Shiny app for customizable visualization of differential expression datasets

publication published on 13 October 2021

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