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List of works by Jochen Klumpp

Analysis of the intestinal microbiome of a recovered Clostridium difficile patient after fecal transplantation

scientific article

Bacteriophage P70: unique morphology and unrelatedness to other Listeria bacteriophages

scientific article

Bacteriophage functional genomics and its role in bacterial pathogen detection

scientific article published on 21 March 2013

Bifidobacterium pseudolongum Strain PV8-2, Isolated from a Stool Sample of an Anemic Kenyan Infant

scientific article published on 22 January 2015

Biocontrol of Salmonella Typhimurium in RTE foods with the virulent bacteriophage FO1-E2.

scientific article published on 23 December 2011

Brochothrix thermosphacta bacteriophages feature heterogeneous and highly mosaic genomes and utilize unique prophage insertion sites.

scientific article

Comparative genome analysis of Listeria bacteriophages reveals extensive mosaicism, programmed translational frameshifting, and a novel prophage insertion site

scientific article published on 25 September 2009

Complete Genome Sequence of Anoxybacillus flavithermus Strain 52-1A Isolated from a Heat-Processed Powdered Milk Concentrate

scientific article published on 10 August 2017

Complete Genome Sequence of Citrobacter freundii 705SK3, an OXA-48-Encoding Wastewater Isolate

scientific article published on 17 August 2017

Complete Genome Sequence of Enterobacter cloacae 704SK10, an OXA-48-Encoding Wastewater Isolate

scientific article published on 17 August 2017

Complete Genome Sequence of Escherichia coli ABWA45, an rmtB-Encoding Wastewater Isolate

scientific article published on 24 August 2017

Complete Genome Sequence of Listeria monocytogenes Lm60, a Strain with an Enhanced Cold Adaptation Capacity

scientific article published on 4 December 2014

Complete Genome Sequence of Listeria monocytogenes N2306, a Strain Associated with the 2013-2014 Listeriosis Outbreak in Switzerland

scientific article

Complete Genome Sequence of Staphylococcus carnosus LTH 3730.

scientific article

Complete Nucleotide Sequence and Molecular Characterization of Bacillus Phage TP21 and its Relatedness to Other Phages with the Same Name

scientific article

Complete and Assembled Genome Sequence of Bifidobacterium kashiwanohense PV20-2, Isolated from the Feces of an Anemic Kenyan Infant

scientific article published on 22 January 2015

Complete and Assembled Genome Sequence of Lactobacillus plantarum RI-113 Isolated from Salami

scientific article

Complete genome sequence analysis and identification of putative metallo-beta-lactamase and SpoIIIE homologs in Bacillus cereus group phage BCP8-2, a new member of the proposed Bastille-like group

scientific article published on 4 August 2015

Detection of bacteria with bioluminescent reporter bacteriophage

scientific article published on January 2014

Draft Genome Sequence of Klebsiella pneumoniae 704SK6, an OXA-48- and CTX-M-15-Encoding Wastewater Isolate

scientific article published on 17 August 2017

Draft Genome Sequences of Five Shiga Toxin-Producing Escherichia coli Isolates Harboring the New and Recently Described Subtilase Cytotoxin Allelic Variant subAB2-3

scientific article

Endolysins as antimicrobials

scientific article published on January 2012

Enterobacter sakazakii bacteriophages can prevent bacterial growth in reconstituted infant formula.

scientific article

Escherichia coli O157:H7 Strain EDL933 Harbors Multiple Functional Prophage-Associated Genes Necessary for the Utilization of 5-N-Acetyl-9-O-Acetyl Neuraminic Acid as a Growth Substrate

scientific article published on 29 July 2016

Feasibility of spray drying bacteriophages into respirable powders to combat pulmonary bacterial infections

scientific article

Full-Genome Sequence of Listeria monocytogenes Strain H34, Isolated from a Newborn with Sepsis in Uruguay

scientific article published on 15 June 2017

Full-Length Nucleotide Sequences of mcr-1-Harboring Plasmids Isolated from Extended-Spectrum-β-Lactamase-Producing Escherichia coli Isolates of Different Origins.

scientific article published on 20 June 2016

Genome Sequence of Salmonella bongori Strain N268-08 [corrected].

scientific article published on 22 August 2013

Genome Sequences of Five Nonvirulent Listeria monocytogenes Serovar 4 Strains

scientific article

Genome Sequences of Listeria monocytogenes Strains Responsible for Cheese- and Cooked Ham Product-Associated Swiss Listeriosis Outbreaks in 2005 and 2011.

scientific article

Genome Sequences of the Listeria ivanovii subsp. ivanovii Type Strain and Two Listeria ivanovii subsp. londoniensis Strains

scientific article published on 22 January 2015

Genome sequence of Listeria monocytogenes Scott A, a clinical isolate from a food-borne listeriosis outbreak

scientific article published on 17 June 2011

Identification of novel genes in genomic islands that contribute to Salmonella typhimurium replication in macrophages

scientific article

Inducible Clostridium perfringens bacteriophages ΦS9 and ΦS63: Different genome structures and a fully functional sigK intervening element

scientific article

Insertion-duplication mutagenesis of Salmonella enterica and related species using a novel thermosensitive vector

scientific article published on 24 August 2005

Key features of mcr-1-bearing plasmids from Escherichia coli isolated from humans and food

scientific article published on 6 September 2017

Listeria phages: Genomes, evolution, and application

scientific article published on July 2013

Long tail fibres of the novel broad-host-range T-even bacteriophage S16 specifically recognize Salmonella OmpC.

scientific article published on 15 January 2013

Long-term changes of bacterial and viral compositions in the intestine of a recovered Clostridium difficile patient after fecal microbiota transplantation

scientific article published on January 2016

Modified Bacteriophage S16 Long Tail Fiber Proteins for Rapid and Specific Immobilization and Detection of Salmonella Cells

scientific article published on 14 April 2017

Next generation sequencing technologies and the changing landscape of phage genomics

scientific article published on July 2012

PEGylation of bacteriophages increases blood circulation time and reduces T-helper type 1 immune response

scientific article published on May 2008

Pathogenomics of Listeria spp.

scientific article

Receptor binding proteins of Listeria monocytogenes bacteriophages A118 and P35 recognize serovar-specific teichoic acids

scientific article published on 21 February 2015

Role of cold shock proteins in growth of Listeria monocytogenes under cold and osmotic stress conditions

scientific article published on 16 January 2009

Stable core virome despite variable microbiome after fecal transfer

scientific article

Structure and transformation of bacteriophage A511 baseplate and tail upon infection of Listeria cells

scientific article published on 02 January 2019

Taxonomic reassessment of N4-like viruses using comparative genomics and proteomics suggests a new subfamily - "Enquartavirinae".

scientific article published on 23 September 2015

Taxonomy of prokaryotic viruses: 2017 update from the ICTV Bacterial and Archaeal Viruses Subcommittee.

scientific article published on 22 January 2018

Taxonomy of prokaryotic viruses: 2018-2019 update from the ICTV Bacterial and Archaeal Viruses Subcommittee

scientific article published on 11 March 2020

TetR-dependent gene regulation in intracellular Listeria monocytogenes demonstrates the spatiotemporal surface distribution of ActA.

scientific article published on 15 May 2017

The SPO1-related bacteriophages

scientific article published on 17 August 2010

The odd one out: Bacillus ACT bacteriophage CP-51 exhibits unusual properties compared to related Spounavirinae W.Ph. and Bastille

scientific article published on 08 July 2014

The tail-associated depolymerase of Erwinia amylovora phage L1 mediates host cell adsorption and enzymatic capsule removal, which can enhance infection by other phage

scientific article published on 15 August 2013

The terminally redundant, nonpermuted genome of Listeria bacteriophage A511: a model for the SPO1-like myoviruses of gram-positive bacteria

scientific article

Vertical transmission of highly similar bla CTX-M-1-harboring IncI1 plasmids in Escherichia coli with different MLST types in the poultry production pyramid

scientific article published on 30 September 2014

Whole genome sequencing and comparative genomic analyses of two Vibrio cholerae O139 Bengal-specific Podoviruses to other N4-like phages reveal extensive genetic diversity

scientific article published on 28 May 2013

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