List of works - Ian R. McDonald

A novel pink-pigmented facultative methylotroph, Methylobacterium thiocyanatum sp. nov., capable of growth on thiocyanate or cyanate as sole nitrogen sources.

scientific article

A novel thermophilic methane-oxidising γ-Proteobacterium

scientific article published in 1999

A review of bacterial methyl halide degradation: biochemistry, genetics and molecular ecology.

scientific article

Aminobacter ciceronei sp. nov. and Aminobacter lissarensis sp. nov., isolated from various terrestrial environments.

scientific article

Analysis of genes involved in methyl halide degradation in Aminobacter lissarensis CC495.

scientific article published in October 2005

Analysis of methane monooxygenase genes in mono lake suggests that increased methane oxidation activity may correlate with a change in methanotroph community structure

scientific article

Analysis of methanotrophic bacteria in Movile Cave by stable isotope probing.

scientific article published in February 2004

Autotrophic growth on carbon disulfide is a property of novel strains of Paracoccus denitrificans ⬇️

scientific article published on September 1, 1997

Bacterial diversity in the bacterioneuston (sea surface microlayer): the bacterioneuston through the looking glass.

scientific article published in May 2005

Biotic interactions are an unexpected yet critical control on the complexity of an abiotically driven polar ecosystem

scientific article published in 2019

Chloromethane utilization gene cluster from Hyphomicrobium chloromethanicum strain CM2(T) and development of functional gene probes to detect halomethane-degrading bacteria

scientific article

Chloromethane-dependent expression of the cmu gene cluster of Hyphomicrobium chloromethanicum.

scientific article

Chthonomonas calidirosea gen. nov., sp. nov., an aerobic, pigmented, thermophilic micro-organism of a novel bacterial class, Chthonomonadetes classis nov., of the newly described phylum Armatimonadetes originally designated candidate division OP10.

scientific article

Comparison of pmoA PCR primer sets as tools for investigating methanotroph diversity in three Danish soils

scientific article

Degradation of methyl bromide and methyl chloride in soil microcosms: Use of stable C isotope fractionation and stable isotope probing to identify reactions and the responsible microorganisms

scholarly article

Detection of methanotrophs with highly divergent pmoA genes from Arctic soils

article

Diversity of methyl halide-degrading microorganisms in oceanic and coastal waters

scientific article published on 9 July 2012

Diversity of soluble methane monooxygenase-containing methanotrophs isolated from polluted environments.

scientific article

Electing a candidate: a speculative history of the bacterial phylum OP10.

scientific article published on 13 April 2012

Evaluation of lactic acid bacterium from chilli waste as a potential antifungal agent for wood products

scientific article published in March 2012

Evidence for the presence of a CmuA methyltransferase pathway in novel marine methyl halide-oxidizing bacteria

article

Genomic analysis of Chthonomonas calidirosea, the first sequenced isolate of the phylum Armatimonadetes

scientific article

Groundtruthing next-gen sequencing for microbial ecology-biases and errors in community structure estimates from PCR amplicon pyrosequencing

scientific article

Identification of a complete methane monooxygenase operon from soil by combining stable isotope probing and metagenomic analysis

scientific article published in July 2006

Identification of methyl halide-utilizing genes in the methyl bromide-utilizing bacterial strain IMB-1 suggests a high degree of conservation of methyl halide-specific genes in gram-negative bacteria.

scientific article

Identifying diazotrophs by incorporation of nitrogen from (15)N(2) into RNA.

scientific article

Ignisphaera aggregans gen. nov., sp. nov., a novel hyperthermophilic crenarchaeote isolated from hot springs in Rotorua and Tokaanu, New Zealand

scientific article

Isolation and properties of methanesulfonate-degrading Afipia felis from Antarctica and comparison with other strains of A. felis

scientific article published in January 2005

Laboratory rearing of huhu, Prionoplus reticularis (Cerambycidae): insights into the gut microbiome

Methane oxidation potential and preliminary analysis of methanotrophs in blanket bog peat using molecular ecology techniques

Methanotrophic populations in estuarine sediment from Newport Bay, California

scientific article published in September 2005

Methyl chloride utilising bacteria are ubiquitous in the natural environment

scholarly article by C McAnulla published in July 2001

Methylobacter tundripaludum sp. nov., a methane-oxidizing bacterium from Arctic wetland soil on the Svalbard islands, Norway (78 degrees N).

scientific article

Methylocystis rosea sp. nov., a novel methanotrophic bacterium from Arctic wetland soil, Svalbard, Norway (78 degrees N).

scientific article

Microbial biodiversity of thermophilic communities in hot mineral soils of Tramway Ridge, Mount Erebus, Antarctica.

scientific article

Microbial community composition in soils of Northern Victoria Land, Antarctica

scientific article

Microbial life in Champagne Pool, a geothermal spring in Waiotapu, New Zealand

scientific article

Microbiological processes in the terrestrial carbon cycle: methane cycling in peat

Molecular Ecological Analysis of Methanogens and Methanotrophs in Blanket Bog Peat

scientific article published in October 1999

Molecular analysis of an outer membrane protein, MopB, of Methylococcus capsulatus (Bath) and structural comparisons with proteins of the OmpA family.

scientific article published on May 2000

Molecular analysis of the pmo (particulate methane monooxygenase) operons from two type II methanotrophs.

scientific article

Molecular detection and isolation from antarctica of methylotrophic bacteria able to grow with methylated sulfur compounds

scientific article published in August 2005

Molecular detection and isolation of facultatively methylotrophic bacteria, including Methylobacterium podarium sp. nov., from the human foot microflora

scientific article

Molecular diversity of methanotrophs in Transbaikal soda lake sediments and identification of potentially active populations by stable isotope probing

article

Molecular ecology techniques for the study of aerobic methanotrophs

scientific article

Molecular methods for the study of methanotroph ecology

article published in 1998

Nitrate removal, communities of denitrifiers and adverse effects in different carbon substrates for use in denitrification beds

scientific article (publication date: November 2011)

On the rocks: the microbiology of Antarctic Dry Valley soils

scientific article

Phylogenetic delineation of the novel phylum Armatimonadetes (former candidate division OP10) and definition of two novel candidate divisions.

scientific article

Rapid microbial response to the presence of an ancient relic in the Antarctic Dry Valleys.

scientific article

Regulation of expression of methane monooxygenases by copper ions.

scientific article

Stable isotope probing: technical considerations when resolving (15)N-labeled RNA in gradients.

scientific article published on 10 November 2009

Stable-isotope probing implicates Methylophaga spp and novel Gammaproteobacteria in marine methanol and methylamine metabolism

scientific article

Stable-isotope probing of nucleic acids: a window to the function of uncultured microorganisms

scientific article

Survival of Plasmid-Containing Bacillus subtilis Released into Mushroom Compost

scientific article published on 01 July 1998

Taxonomic relationships of Thiobacillus halophilus, T. aquaesulis, and other species of Thiobacillus, as determined using 16S rDNA sequencing

scientific article published on 01 December 1996

The Chthonomonas calidirosea Genome Is Highly Conserved across Geographic Locations and Distinct Chemical and Microbial Environments in New Zealand's Taupō Volcanic Zone

scientific article

The Inter-Valley Soil Comparative Survey: the ecology of Dry Valley edaphic microbial communities

scientific article published on 15 December 2011

The particulate methane monooxygenase gene pmoA and its use as a functional gene probe for methanotrophs

scientific article published in November 1997

Use of DNA-stable isotope probing and functional gene probes to investigate the diversity of methyl chloride-utilizing bacteria in soil

article

List of works by Ian R. McDonald

A novel pink-pigmented facultative methylotroph, Methylobacterium thiocyanatum sp. nov., capable of growth on thiocyanate or cyanate as sole nitrogen sources.

A novel thermophilic methane-oxidising γ-Proteobacterium

A review of bacterial methyl halide degradation: biochemistry, genetics and molecular ecology.

Aminobacter ciceronei sp. nov. and Aminobacter lissarensis sp. nov., isolated from various terrestrial environments.

Analysis of genes involved in methyl halide degradation in Aminobacter lissarensis CC495.

Analysis of methane monooxygenase genes in mono lake suggests that increased methane oxidation activity may correlate with a change in methanotroph community structure

Analysis of methanotrophic bacteria in Movile Cave by stable isotope probing.

Autotrophic growth on carbon disulfide is a property of novel strains of Paracoccus denitrificans ⬇️

Bacterial diversity in the bacterioneuston (sea surface microlayer): the bacterioneuston through the looking glass.

Biotic interactions are an unexpected yet critical control on the complexity of an abiotically driven polar ecosystem

Chloromethane utilization gene cluster from Hyphomicrobium chloromethanicum strain CM2(T) and development of functional gene probes to detect halomethane-degrading bacteria

Chloromethane-dependent expression of the cmu gene cluster of Hyphomicrobium chloromethanicum.

Chthonomonas calidirosea gen. nov., sp. nov., an aerobic, pigmented, thermophilic micro-organism of a novel bacterial class, Chthonomonadetes classis nov., of the newly described phylum Armatimonadetes originally designated candidate division OP10.

Comparison of pmoA PCR primer sets as tools for investigating methanotroph diversity in three Danish soils

Degradation of methyl bromide and methyl chloride in soil microcosms: Use of stable C isotope fractionation and stable isotope probing to identify reactions and the responsible microorganisms

Detection of methanotrophs with highly divergent pmoA genes from Arctic soils

Diversity of methyl halide-degrading microorganisms in oceanic and coastal waters

Diversity of soluble methane monooxygenase-containing methanotrophs isolated from polluted environments.

Electing a candidate: a speculative history of the bacterial phylum OP10.

Evaluation of lactic acid bacterium from chilli waste as a potential antifungal agent for wood products

Evidence for the presence of a CmuA methyltransferase pathway in novel marine methyl halide-oxidizing bacteria

Genomic analysis of Chthonomonas calidirosea, the first sequenced isolate of the phylum Armatimonadetes

Groundtruthing next-gen sequencing for microbial ecology-biases and errors in community structure estimates from PCR amplicon pyrosequencing

Identification of a complete methane monooxygenase operon from soil by combining stable isotope probing and metagenomic analysis

Identification of methyl halide-utilizing genes in the methyl bromide-utilizing bacterial strain IMB-1 suggests a high degree of conservation of methyl halide-specific genes in gram-negative bacteria.

Identifying diazotrophs by incorporation of nitrogen from (15)N(2) into RNA.

Ignisphaera aggregans gen. nov., sp. nov., a novel hyperthermophilic crenarchaeote isolated from hot springs in Rotorua and Tokaanu, New Zealand

Isolation and properties of methanesulfonate-degrading Afipia felis from Antarctica and comparison with other strains of A. felis

Laboratory rearing of huhu, Prionoplus reticularis (Cerambycidae): insights into the gut microbiome

Methane oxidation potential and preliminary analysis of methanotrophs in blanket bog peat using molecular ecology techniques

Methanotrophic populations in estuarine sediment from Newport Bay, California

Methyl chloride utilising bacteria are ubiquitous in the natural environment

Methylobacter tundripaludum sp. nov., a methane-oxidizing bacterium from Arctic wetland soil on the Svalbard islands, Norway (78 degrees N).

Methylocystis rosea sp. nov., a novel methanotrophic bacterium from Arctic wetland soil, Svalbard, Norway (78 degrees N).

Microbial biodiversity of thermophilic communities in hot mineral soils of Tramway Ridge, Mount Erebus, Antarctica.

Microbial community composition in soils of Northern Victoria Land, Antarctica

Microbial life in Champagne Pool, a geothermal spring in Waiotapu, New Zealand

Microbiological processes in the terrestrial carbon cycle: methane cycling in peat

Molecular Ecological Analysis of Methanogens and Methanotrophs in Blanket Bog Peat

Molecular analysis of an outer membrane protein, MopB, of Methylococcus capsulatus (Bath) and structural comparisons with proteins of the OmpA family.

Molecular analysis of the pmo (particulate methane monooxygenase) operons from two type II methanotrophs.

Molecular detection and isolation from antarctica of methylotrophic bacteria able to grow with methylated sulfur compounds

Molecular detection and isolation of facultatively methylotrophic bacteria, including Methylobacterium podarium sp. nov., from the human foot microflora

Molecular diversity of methanotrophs in Transbaikal soda lake sediments and identification of potentially active populations by stable isotope probing

Molecular ecology techniques for the study of aerobic methanotrophs

Molecular methods for the study of methanotroph ecology

Nitrate removal, communities of denitrifiers and adverse effects in different carbon substrates for use in denitrification beds

On the rocks: the microbiology of Antarctic Dry Valley soils

Phylogenetic delineation of the novel phylum Armatimonadetes (former candidate division OP10) and definition of two novel candidate divisions.

Rapid microbial response to the presence of an ancient relic in the Antarctic Dry Valleys.

Regulation of expression of methane monooxygenases by copper ions.

Stable isotope probing: technical considerations when resolving (15)N-labeled RNA in gradients.

Stable-isotope probing implicates Methylophaga spp and novel Gammaproteobacteria in marine methanol and methylamine metabolism

Stable-isotope probing of nucleic acids: a window to the function of uncultured microorganisms

Survival of Plasmid-Containing Bacillus subtilis Released into Mushroom Compost

Taxonomic relationships of Thiobacillus halophilus, T. aquaesulis, and other species of Thiobacillus, as determined using 16S rDNA sequencing

The Chthonomonas calidirosea Genome Is Highly Conserved across Geographic Locations and Distinct Chemical and Microbial Environments in New Zealand's Taupō Volcanic Zone

The Inter-Valley Soil Comparative Survey: the ecology of Dry Valley edaphic microbial communities

The particulate methane monooxygenase gene pmoA and its use as a functional gene probe for methanotrophs

Use of DNA-stable isotope probing and functional gene probes to investigate the diversity of methyl chloride-utilizing bacteria in soil