List of works - Michael I Love

2010 Canadian Cardiovascular Society/Canadian Association of Interventional Cardiologists Guidelines for Training and Maintenance of Competency in Adult Interventional Cardiology

scientific article published on 14 September 2011

A benchmark for RNA-seq quantification pipelines

scientific article

A framework for transcriptome-wide association studies in breast cancer in diverse study populations

scientific article published on 20 February 2020

A junction coverage compatibility score to quantify the reliability of transcript abundance estimates and annotation catalogs

scientific article published on 17 January 2019

A multi-region assessment of population rates of cardiac catheterization and yield of high-risk coronary artery disease ⬇️

scientific article published on November 24, 2011

Adipose Tissue Gene Expression Associations Reveal Hundreds of Candidate Genes for Cardiometabolic Traits

scientific article published on 26 September 2019

Airway epithelial miRNA expression is altered in asthma.

scientific article

Alignment and mapping methodology influence transcript abundance estimation

scientific article published on 07 September 2020

An approach for normalization and quality control for NanoString RNA expression data

scientific article published on 13 August 2020

Assessing exposure effects on gene expression

scientific article published on 08 June 2020

Bienes estratégicos del antiguo occidente de México: Productión e Intercambio. Eduardo Williams, editor. El Colegio de Michoacán, Michocán, México, 2004. 379 pp. figures, tables, bibliography, index

Brain-trait-associated variants impact cell-type-specific gene regulation during neurogenesis

scientific article published on 19 August 2021

Breakpointer: using local mapping artifacts to support sequence breakpoint discovery from single-end reads

scientific article published in February 2012

Canadian Cardiovascular Society/Canadian Cardiovascular Critical Care Society/Canadian Association of Interventional Cardiology Position Statement on the Optimal Care of the Postarrest Patient.

scientific article published on 3 November 2016

Cell-type-specific effects of genetic variation on chromatin accessibility during human neuronal differentiation

scientific article published on 20 May 2021

ChIP-exo signal associated with DNA-binding motifs provides insight into the genomic binding of the glucocorticoid receptor and cooperating transcription factors

scientific article published on 26 February 2015

Comparative analysis of neutrophil and monocyte epigenomes

Consistency and overfitting of multi-omics methods on experimental data

scientific article published on 04 July 2019

DeCompress: tissue compartment deconvolution of targeted mRNA expression panels using compressed sensing

scientific article published on 01 May 2021

Deletions of chromosomal regulatory boundaries are associated with congenital disease

scientific article

Detached tip of a transseptal sheath during left atrial ablation ⬇️

scientific article published on December 8, 2011

Differences in race, molecular and tumor characteristics among women diagnosed with invasive ductal and lobular breast carcinomas

scientific article published on 08 January 2019

Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences

scientific article

Dual antiplatelet therapy in patients requiring urgent coronary artery bypass grafting surgery: a position statement of the Canadian Cardiovascular Society

scientific article published on December 2009

Erratum to: A benchmark for RNA-seq quantification pipelines.

scientific article published on 30 September 2016

Erratum to: A benchmark for RNA-seq quantification pipelines.

scientific article published on 23 May 2016

Evaluating brain structure traits as endophenotypes using polygenicity and discoverability

scientific article published on 24 October 2020

Examining relationships among dialect variation, literacy skills, and school context in first grade

scientific article published in February 2010

ExploreModelMatrix: Interactive exploration for improved understanding of design matrices and linear models in R

scientific article published on 04 June 2020

Factors affecting salvage rate of infected prosthetic mesh

scientific article published on 23 January 2020

Flexible expressed region analysis for RNA-seq with derfinder

scientific article published on 29 September 2016

Flexible expressed region analysis for RNA-seq with derfinder

scholarly article published 19 February 2015

Fluent genomics with plyranges and tximeta

scientific article published on 12 February 2020

Gastropericardial Fistula Presenting 27 Years after Bariatric Surgery.

scientific article published on 6 October 2017

Generation of a Transcriptional Radiation Exposure Signature in Human Blood Using Long-Read Nanopore Sequencing

scientific article published on 12 December 2019

Heavy-tailed prior distributions for sequence count data: removing the noise and preserving large differences

scientific article published in June 2019

Improving the completeness of public metadata accompanying omics studies

scientific article published in 2021

Incisional Hernia Repair: Minimally Invasive Approaches

scientific article published on 12 March 2018

Increased STAG2 dosage defines a novel cohesinopathy with intellectual disability and behavioral problems

scientific article published on 6 October 2015

Initial experience with pre-activation of the cardiac catheterization lab and emergency room bypass for patients with ST-elevation myocardial infarction in Halifax, Nova Scotia

scientific article

Intergenerational response to the endocrine disruptor vinclozolin is influenced by maternal genotype and crossing scheme.

scientific article published on 10 March 2018

KAMINALJUYU CHRONOLOGY AND CERAMIC ANALYSIS: AN ALTERNATIVE VIEW

scholarly article by Michael Love published in December 2017

MAGeCK enables robust identification of essential genes from genome-scale CRISPR/Cas9 knockout screens

scientific article

MOVIE: Multi-Omics VIsualization of Estimated contributions

article

MRLocus: Identifying causal genes mediating a trait through Bayesian estimation of allelic heterogeneity

scientific article published in 2021

Material Symbols: Culture and Economy in Prehistory. John E. Robb, editor, Occasional Papers, Vol. 26. Center for Archaeological Investigations, Southern Illinois University, Carbondale, 1999. x + 414 pp., figures, tables, bibliographies, index. $40.

Modeling of RNA-seq fragment sequence bias reduces systematic errors in transcript abundance estimation

article

Modeling of RNA-seq fragment sequence bias reduces systematic errors in transcript abundance estimation.

scientific article published on 26 September 2016

Modeling read counts for CNV detection in exome sequencing data

scientific article

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

scientific article (publication date: 2014)

Monument 3 from La Blanca, Guatemala: a Middle Preclassic earthen sculpture and its ritual associations

Multisensory Logic of Infant-Directed Aggression by Males

scientific article published on 01 December 2018

Nonparametric expression analysis using inferential replicate counts

scientific article published on 01 October 2019

Observation weights to unlock bulk RNA-seq tools for zero inflation and single-cell applications

scholarly article published 18 January 2018

Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications.

scientific article published on 26 February 2018

Orchestrating high-throughput genomic analysis with Bioconductor

scientific article

Quality Control and Chronology: Response to Inomata and Colleagues

scholarly article by Michael Love published in March 2019

RNA sequencing data: hitchhiker's guide to expression analysis

RNA-Seq workflow: gene-level exploratory analysis and differential expression

scientific article published on 14 October 2015

Recent Research in the Southern Highlands and Pacific Coast of Mesoamerica

Reproductive risk factor associations with lobular and ductal carcinoma in the Carolina Breast Cancer Study.

scientific article published on 9 November 2017

Role of the chromatin landscape and sequence in determining cell type-specific genomic glucocorticoid receptor binding and gene regulation

scientific article

SAFE-clustering: Single-cell Aggregated (from Ensemble) clustering for single-cell RNA-seq data

scientific article published on 01 April 2019

Salmon provides fast and bias-aware quantification of transcript expression

scientific article published on 6 March 2017

Static and Dynamic DNA Loops form AP-1-Bound Activation Hubs during Macrophage Development

scientific article published in September 2017

Swimming downstream: statistical analysis of differential transcript usage following Salmon quantification

article by Michael I Love et al published 1 October 2018 in F1000Research

Swimming downstream: statistical analysis of differential transcript usage following Salmon quantification

article by Michael I Love et al published 27 June 2018 in F1000Research

TP53 Pathway Function, Estrogen Receptor Status, and Breast Cancer Risk Factors in the Carolina Breast Cancer Study

scientific article published in 2021

TRPM2 mediates ischemic kidney injury and oxidant stress through RAC1.

scientific article

Terminus enables the discovery of data-driven, robust transcript groups from RNA-seq data

scientific article published on 01 July 2020

Tximeta: Reference sequence checksums for provenance identification in RNA-seq

scientific article published on 25 February 2020

X-exome sequencing of 405 unresolved families identifies seven novel intellectual disability genes

scientific journal article

bootRanges: flexible generation of null sets of genomic ranges for hypothesis testing

scientific article published in 2023

coTRaCTE predicts co-occurring transcription factors within cell-type specific enhancers

scientific article published on 24 August 2018

matchRanges: generating null hypothesis genomic ranges via covariate-matched sampling

scientific article published in 2023

zingeR: unlocking RNA-seq tools for zero-inflation and single cell applications

scholarly article published 30 June 2017

List of works by Michael I Love

2010 Canadian Cardiovascular Society/Canadian Association of Interventional Cardiologists Guidelines for Training and Maintenance of Competency in Adult Interventional Cardiology

A benchmark for RNA-seq quantification pipelines

A framework for transcriptome-wide association studies in breast cancer in diverse study populations

A junction coverage compatibility score to quantify the reliability of transcript abundance estimates and annotation catalogs

A junction coverage compatibility score to quantify the reliability of transcript abundance estimates and annotation catalogs

A multi-region assessment of population rates of cardiac catheterization and yield of high-risk coronary artery disease ⬇️

Adipose Tissue Gene Expression Associations Reveal Hundreds of Candidate Genes for Cardiometabolic Traits

Airway epithelial miRNA expression is altered in asthma.

Alignment and mapping methodology influence transcript abundance estimation

An approach for normalization and quality control for NanoString RNA expression data

Assessing exposure effects on gene expression

Bienes estratégicos del antiguo occidente de México: Productión e Intercambio. Eduardo Williams, editor. El Colegio de Michoacán, Michocán, México, 2004. 379 pp. figures, tables, bibliography, index

Brain-trait-associated variants impact cell-type-specific gene regulation during neurogenesis

Breakpointer: using local mapping artifacts to support sequence breakpoint discovery from single-end reads

Canadian Cardiovascular Society/Canadian Cardiovascular Critical Care Society/Canadian Association of Interventional Cardiology Position Statement on the Optimal Care of the Postarrest Patient.

Cell-type-specific effects of genetic variation on chromatin accessibility during human neuronal differentiation

ChIP-exo signal associated with DNA-binding motifs provides insight into the genomic binding of the glucocorticoid receptor and cooperating transcription factors

Comparative analysis of neutrophil and monocyte epigenomes

Consistency and overfitting of multi-omics methods on experimental data

DeCompress: tissue compartment deconvolution of targeted mRNA expression panels using compressed sensing

Deletions of chromosomal regulatory boundaries are associated with congenital disease

Detached tip of a transseptal sheath during left atrial ablation ⬇️

Differences in race, molecular and tumor characteristics among women diagnosed with invasive ductal and lobular breast carcinomas

Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences

Dual antiplatelet therapy in patients requiring urgent coronary artery bypass grafting surgery: a position statement of the Canadian Cardiovascular Society

Erratum to: A benchmark for RNA-seq quantification pipelines.

Erratum to: A benchmark for RNA-seq quantification pipelines.

Evaluating brain structure traits as endophenotypes using polygenicity and discoverability

Examining relationships among dialect variation, literacy skills, and school context in first grade

ExploreModelMatrix: Interactive exploration for improved understanding of design matrices and linear models in R

Factors affecting salvage rate of infected prosthetic mesh

Flexible expressed region analysis for RNA-seq with derfinder

Flexible expressed region analysis for RNA-seq with derfinder

Fluent genomics with plyranges and tximeta

Gastropericardial Fistula Presenting 27 Years after Bariatric Surgery.

Generation of a Transcriptional Radiation Exposure Signature in Human Blood Using Long-Read Nanopore Sequencing

Heavy-tailed prior distributions for sequence count data: removing the noise and preserving large differences

Heavy-tailed prior distributions for sequence count data: removing the noise and preserving large differences

Improving the completeness of public metadata accompanying omics studies

Incisional Hernia Repair: Minimally Invasive Approaches

Increased STAG2 dosage defines a novel cohesinopathy with intellectual disability and behavioral problems

Initial experience with pre-activation of the cardiac catheterization lab and emergency room bypass for patients with ST-elevation myocardial infarction in Halifax, Nova Scotia

Intergenerational response to the endocrine disruptor vinclozolin is influenced by maternal genotype and crossing scheme.

KAMINALJUYU CHRONOLOGY AND CERAMIC ANALYSIS: AN ALTERNATIVE VIEW

MAGeCK enables robust identification of essential genes from genome-scale CRISPR/Cas9 knockout screens

MOVIE: Multi-Omics VIsualization of Estimated contributions

MRLocus: Identifying causal genes mediating a trait through Bayesian estimation of allelic heterogeneity

Material Symbols: Culture and Economy in Prehistory. John E. Robb, editor, Occasional Papers, Vol. 26. Center for Archaeological Investigations, Southern Illinois University, Carbondale, 1999. x + 414 pp., figures, tables, bibliographies, index. $40.

Modeling of RNA-seq fragment sequence bias reduces systematic errors in transcript abundance estimation

Modeling of RNA-seq fragment sequence bias reduces systematic errors in transcript abundance estimation.

Modeling read counts for CNV detection in exome sequencing data

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Monument 3 from La Blanca, Guatemala: a Middle Preclassic earthen sculpture and its ritual associations

Multisensory Logic of Infant-Directed Aggression by Males

Nonparametric expression analysis using inferential replicate counts

Observation weights to unlock bulk RNA-seq tools for zero inflation and single-cell applications

Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications.

Orchestrating high-throughput genomic analysis with Bioconductor

Quality Control and Chronology: Response to Inomata and Colleagues

RNA sequencing data: hitchhiker's guide to expression analysis

RNA sequencing data: hitchhiker's guide to expression analysis

RNA-Seq workflow: gene-level exploratory analysis and differential expression

Recent Research in the Southern Highlands and Pacific Coast of Mesoamerica

Reproductive risk factor associations with lobular and ductal carcinoma in the Carolina Breast Cancer Study.

Role of the chromatin landscape and sequence in determining cell type-specific genomic glucocorticoid receptor binding and gene regulation

SAFE-clustering: Single-cell Aggregated (from Ensemble) clustering for single-cell RNA-seq data

Salmon provides fast and bias-aware quantification of transcript expression

Static and Dynamic DNA Loops form AP-1-Bound Activation Hubs during Macrophage Development

Swimming downstream: statistical analysis of differential transcript usage following Salmon quantification

Swimming downstream: statistical analysis of differential transcript usage following Salmon quantification

TP53 Pathway Function, Estrogen Receptor Status, and Breast Cancer Risk Factors in the Carolina Breast Cancer Study

TRPM2 mediates ischemic kidney injury and oxidant stress through RAC1.

Terminus enables the discovery of data-driven, robust transcript groups from RNA-seq data

Tximeta: Reference sequence checksums for provenance identification in RNA-seq

X-exome sequencing of 405 unresolved families identifies seven novel intellectual disability genes

bootRanges: flexible generation of null sets of genomic ranges for hypothesis testing

coTRaCTE predicts co-occurring transcription factors within cell-type specific enhancers

matchRanges: generating null hypothesis genomic ranges via covariate-matched sampling

zingeR: unlocking RNA-seq tools for zero-inflation and single cell applications