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List of works by Marina G. Kalyuzhnaya

A metagenomic insight into freshwater methane-utilizing communities and evidence for cooperation between the Methylococcaceae and the Methylophilaceae

scientific article published on 19 February 2013

A methanotroph-based biorefinery: Potential scenarios for generating multiple products from a single fermentation.

scientific article published on 22 April 2016

A novel family of functional operons encoding methane/ammonia monooxygenase-related proteins in gammaproteobacterial methanotrophs

scientific article published in February 2011

An integrated proteomics/transcriptomics approach points to oxygen as the main electron sink for methanol metabolism in Methylotenera mobilis

scientific article

Analysis of fae and fhcD genes in Mono Lake, California

scientific article

Analysis of gene islands involved in methanopterin-linked C1 transfer reactions reveals new functions and provides evolutionary insights

scientific article

Bacterial populations active in metabolism of C1 compounds in the sediment of Lake Washington, a freshwater lake

scientific article

Bioconversion of methane to lactate by an obligate methanotrophic bacterium.

scientific article published on 23 February 2016

Characterization of a novel methanol dehydrogenase in representatives of Burkholderiales: implications for environmental detection of methylotrophy and evidence for convergent evolution

scientific article

Community-level analysis: genes encoding methanopterin-dependent enzymes

scientific article published in January 2005

Comparative proteomic analysis reveals insights into anoxic growth ofMethyloversatilis universalis FAM5 on methanol and ethanol

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Comparative transcriptomics in three Methylophilaceae species uncover different strategies for environmental adaptation

scientific article published on 25 July 2013

C₁-Pathways in Methyloversatilis universalis FAM5: Genome Wide Gene Expression and Mutagenesis Studies

scientific article

Development and application of polymerase chain reaction primers based on fhcD for environmental detection of methanopterin-linked C1-metabolism in bacteria

scientific article published in August 2005

Development of a solid phase extraction protocol coupled with liquid chromatography mass spectrometry to analyze central carbon metabolites in lake sediment microcosms

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Diversity and phylogeny of the ectoine biosynthesis genes in aerobic, moderately halophilic methylotrophic bacteria

scientific article

Draft Genome Sequence of Methyloferula stellata AR4, an Obligate Methanotroph Possessing Only a Soluble Methane Monooxygenase

scientific article

Draft Genome Sequence of the Moderately Halophilic Methanotroph Methylohalobius crimeensis Strain 10Ki

scientific article published on 11 June 2015

Draft Genome Sequences of Gammaproteobacterial Methanotrophs Isolated from Marine Ecosystems

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Draft genome sequences of gammaproteobacterial methanotrophs isolated from lake washington sediment

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Draft genomes of gammaproteobacterial methanotrophs isolated from terrestrial ecosystems

scientific article published on 4 June 2015

Epiphytic pink-pigmented methylotrophic bacteria enhance germination and seedling growth of wheat (Triticum aestivum) by producing phytohormone

scientific article

Fishing for biodiversity: novel methanopterin-linked C transfer genes deduced from the Sargasso Sea metagenome

scientific article published in December 2005

Fluorescence in situ hybridization-flow cytometry-cell sorting-based method for separation and enrichment of type I and type II methanotroph populations

scientific article

Functional and genomic diversity of methylotrophic Rhodocyclaceae: description of Methyloversatilis discipulorum sp. nov.

scientific article

Functional metagenomics of methylotrophs

scientific article published in January 2011

Functioning in situ: gene expression in Methylotenera mobilis in its native environment as assessed through transcriptomics

scientific article published on 19 November 2009

Genetic systems for moderately halo(alkali)philic bacteria of the genus Methylomicrobium

scientific article published on 01 January 2011

Genetic tools for the industrially promising methanotroph Methylomicrobium buryatense.

scientific article published on 29 December 2014

Genome Sequence of the Obligate Gammaproteobacterial Methanotroph Methylomicrobium album Strain BG8.

scientific article published on March 2013

Genome sequence of Methyloversatilis universalis FAM5T, a methylotrophic representative of the order Rhodocyclales

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Genome sequence of the Arctic methanotroph Methylobacter tundripaludum SV96

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Genome sequence of the haloalkaliphilic methanotrophic bacterium Methylomicrobium alcaliphilum 20Z.

scientific article published on January 2012

Genome sequence of the methanotrophic alphaproteobacterium Methylocystis sp. strain Rockwell (ATCC 49242).

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Genome sequence of the obligate methanotroph Methylosinus trichosporium strain OB3b

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Genome-scale metabolic reconstructions and theoretical investigation of methane conversion in Methylomicrobium buryatense strain 5G(B1).

scientific article

Genomics of Methylotrophy in Gram-Positive Methylamine-Utilizing Bacteria

scientific article published on 20 March 2015

Global Molecular Analyses of Methane Metabolism in Methanotrophic Alphaproteobacterium, Methylosinus trichosporium OB3b. Part I: Transcriptomic Study

scientific article published on 3 April 2013

Global Molecular Analyses of Methane Metabolism in Methanotrophic Alphaproteobacterium, Methylosinus trichosporium OB3b. Part II. Metabolomics and 13C-Labeling Study

scientific article published on 3 April 2013

High-resolution metagenomics targets specific functional types in complex microbial communities

scientific article published in September 2008

Highly divergent genes for methanopterin-linked C1 transfer reactions in Lake Washington, assessed via metagenomic analysis and mRNA detection

scientific article

Highly efficient methane biocatalysis revealed in a methanotrophic bacterium

scientific article published in Nature Communications

Identification and characterization of EctR1, a new transcriptional regulator of the ectoine biosynthesis genes in the halotolerant methanotroph Methylomicrobium alcaliphilum 20Z.

scientific article

Insights into denitrification in Methylotenera mobilis from denitrification pathway and methanol metabolism mutants

scientific article published on 8 March 2013

Insights into the physiology of Methylotenera mobilis as revealed by metagenome-based shotgun proteomic analysis

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Labrys methylaminiphilus sp. nov., a novel facultatively methylotrophic bacterium from a freshwater lake sediment

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Metabolic engineering in methanotrophic bacteria

scientific article published on 28 March 2015

Methane-fed microbial microcosms show differential community dynamics and pinpoint taxa involved in communal response

scientific article published on 21 October 2014

Methanotrophic communities of Saanich Inlet: a microcosm perspective.

scientific article

Methylosarcina lacus sp. nov., a methanotroph from Lake Washington, Seattle, USA, and emended description of the genus Methylosarcina

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Methylotenera mobilis gen. nov., sp. nov., an obligately methylamine-utilizing bacterium within the family Methylophilaceae

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Methyloversatilis universalis gen. nov., sp. nov., a novel taxon within the Betaproteobacteria represented by three methylotrophic isolates

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MtdC, a novel class of methylene tetrahydromethanopterin dehydrogenases

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Multiphyletic origins of methylotrophy in Alphaproteobacteria, exemplified by comparative genomics of Lake Washington isolates

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Novel methylotrophic isolates from lake sediment, description of Methylotenera versatilis sp. nov. and emended description of the genus Methylotenera

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QscR, a LysR-type transcriptional regulator and CbbR homolog, is involved in regulation of the serine cycle genes in Methylobacterium extorquens AM1.

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QscR-mediated transcriptional activation of serine cycle genes in Methylobacterium extorquens AM1.

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Real-time detection of actively metabolizing microbes by redox sensing as applied to methylotroph populations in Lake Washington

scientific article published on 27 March 2008

Respiration response imaging for real-time detection of microbial function at the single-cell level.

scientific article

Single Cell Methods for Methane Oxidation Analysis

scientific article published on 01 January 2011

Sucrose metabolism in halotolerant methanotroph Methylomicrobium alcaliphilum 20Z.

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The enigmatic planctomycetes may hold a key to the origins of methanogenesis and methylotrophy

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The expanded diversity of methylophilaceae from Lake Washington through cultivation and genomic sequencing of novel ecotypes

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The expanding world of methylotrophic metabolism

scientific article published on January 2009