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List of works by Leonardo Mariño-Ramírez

A Comparative Analysis of Genetic Ancestry and Admixture in the Colombian Populations of Chocó and Medellín

scientific article published on 29 August 2017

A c-Myc regulatory subnetwork from human transposable element sequences.

scientific article

Alignments anchored on genomic landmarks can aid in the identification of regulatory elements

scientific article published in June 2005

Analysis of biological features associated with meiotic recombination hot and cold spots in Saccharomyces cerevisiae

scientific article

Banana (Musa acuminata) transcriptome profiling in response to rhizobacteria: Bacillus amyloliquefaciens Bs006 and Pseudomonas fluorescens Ps006

scientific article published on 14 May 2019

Benchmarking computational tools for polymorphic transposable element detection

scientific article published on 14 August 2016

Chocó, Colombia: a hotspot of human biodiversity.

scientific article

Co-evolutionary rates of functionally related yeast genes.

scientific article published on January 2006

Complete mitochondrial genome of the nesting Colombian Caribbean Hawksbill Turtle

scientific article published on 23 February 2017

Conservation and coevolution in the scale-free human gene coexpression network

scientific article published on 28 July 2004

Correction for Deng et al., "HMGN1 Modulates Nucleosome Occupancy and DNase I Hypersensitivity at the CpG Island Promoters of Embryonic Stem Cells".

scientific article

Dataset of Arabidopsis plants that overexpress FT driven by a meristem-specific KNAT1 promoter

scientific article

De novo transcriptome assembly of loggerhead sea turtle nesting of the Colombian Caribbean

scientific article

Detection of high heteroplasmy in complete loggerhead and hawksbill sea turtles mitochondrial genomes using RNAseq

scientific article published on 25 February 2021

Development and characterization of microsatellite markers for the Cape gooseberry Physalis peruviana

scientific article

Differences in local genomic context of bound and unbound motifs.

scientific article

Effect of the transposable element environment of human genes on gene length and expression

scientific article (publication date: 2011)

Epigenetic histone modifications of human transposable elements: genome defense versus exaptation

scientific article

Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA

scientific article

Evolutionary significance of gene expression divergence

scientific article published on 29 December 2004

Expression patterns of protein kinases correlate with gene architecture and evolutionary rates

scientific article

Finding sequence motifs with Bayesian models incorporating positional information: an application to transcription factor binding sites

scientific article

Genetic ancestry and ethnic identity in Ecuador

scientific article published on 20 August 2021

Genetic ancestry, admixture and health determinants in Latin America

article

Genetic diversity and population structure in Physalis peruviana and related taxa based on InDels and SNPs derived from COSII and IRG markers

scientific article published in December 2015

Genome Sequence of the Banana Plant Growth-Promoting Rhizobacterium Bacillus amyloliquefaciens BS006

scientific article published on 25 November 2015

Genome Sequence of the Banana Plant Growth-Promoting Rhizobacterium Pseudomonas fluorescens PS006

scientific article

Genome Sequences of 15 Klebsiella sp. Isolates from Sugarcane Fields in Colombia's Cauca Valley.

scientific article published on 22 March 2018

Genome Sequences of Multidrug-Resistant Salmonella enterica Serovar Paratyphi B (dT+) and Heidelberg Strains from the Colombian Poultry Chain.

scientific article published on 22 October 2015

Genome Sequences of Vibrio navarrensis, a Potential Human Pathogen

scientific article

Genome sequence of the Mycobacterium colombiense type strain, CECT 3035.

scientific article

Genome sequences for six Rhodanobacter strains, isolated from soils and the terrestrial subsurface, with variable denitrification capabilities

scientific article

Global regulation by the yeast Spt10 protein is mediated through chromatin structure and the histone upstream activating sequence elements.

scientific article

Global similarity and local divergence in human and mouse gene co-expression networks

scientific article

HMGN1 modulates nucleosome occupancy and DNase I hypersensitivity at the CpG island promoters of embryonic stem cells

scientific article published on 17 June 2013

Histone structure and nucleosome stability

scientific article published in October 2005

HistoneDB 2.0: a histone database with variants--an integrated resource to explore histones and their variants

scientific article

Human population-specific gene expression and transcriptional network modification with polymorphic transposable elements

scientific article

Identification and mapping of self-assembling protein domains encoded by the Escherichia coli K-12 genome by use of lambda repressor fusions.

scientific article published in March 2004

Identification of cis-regulatory elements in gene co-expression networks using A-GLAM.

scientific article published on January 2009

Identification of immunity related genes to study the Physalis peruviana--Fusarium oxysporum pathosystem

scientific article published on 03 July 2013

In silico identification and characterization of the ion transport specificity for P-type ATPases in the Mycobacterium tuberculosis complex

scientific article

Isolation and mapping of self-assembling protein domains encoded by the Saccharomyces cerevisiae genome using lambda repressor fusions

scientific article (publication date: May 2002)

Mammalian-wide interspersed repeat (MIR)-derived enhancers and the regulation of human gene expression

scientific article

Many sequence-specific chromatin modifying protein-binding motifs show strong positional preferences for potential regulatory regions in the Saccharomyces cerevisiae genome

scientific article

Most of the tight positional conservation of transcription factor binding sites near the transcription start site reflects their co-localization within regulatory modules.

scientific article

Multiple independent evolutionary solutions to core histone gene regulation

scientific article

Origin and evolution of human microRNAs from transposable elements.

scientific article published on 15 April 2007

Polymorphism of the Pv200L fragment of merozoite surface protein-1 of Plasmodium vivax in clinical isolates from the Pacific coast of Colombia

scientific article

Population and clinical genetics of human transposable elements in the (post) genomic era.

scientific article

Prediction of transposable element derived enhancers using chromatin modification profiles

scientific article

Promoter analysis: gene regulatory motif identification with A-GLAM.

scientific article

Scanning sequences after Gibbs sampling to find multiple occurrences of functional elements

scientific article

Screening peptide/protein libraries fused to the lambda repressor DNA-binding domain in E. coli cells.

scientific article

Searching for repeats, as an example of using the generalised Ruzzo-Tompa algorithm to find optimal subsequences with gaps.

scientific article

Sliding Motility, Biofilm Formation, and Glycopeptidolipid Production in Mycobacterium colombiense Strains.

scientific article published on 28 May 2015

Statistical analysis of over-represented words in human promoter sequences

scientific article

TLX1/HOX11-induced hematopoietic differentiation blockade

scientific article

The Histone Database: a comprehensive resource for histones and histone fold-containing proteins

scientific article published in March 2006

The Histone Database: an integrated resource for histones and histone fold-containing proteins

scientific article

The Impact of Ethnicity and Genetic Ancestry on Disease Prevalence and Risk in Colombia

scientific article published on 17 September 2021

The Physalis peruviana leaf transcriptome: assembly, annotation and gene model prediction.

scientific article

The biological function of some human transcription factor binding motifs varies with position relative to the transcription start site

scientific article

The practical evaluation of DNA barcode efficacy

scientific article

Transcriptional Analyses of Acute Exposure to Methylmercury on Erythrocytes of Loggerhead Sea Turtle

scientific article published in 2021

Transcriptional regulation of N-acetylglutamate synthase.

scientific article

Transcriptome annotation in the cloud: complexity, best practices, and cost

scientific article published on 29 January 2021

Transcriptomic analysis of Arabidopsis overexpressing flowering locus T driven by a meristem-specific promoter that induces early flowering

scientific article

Transposable element derived DNaseI-hypersensitive sites in the human genome.

scientific article

Transposable elements donate lineage-specific regulatory sequences to host genomes

scientific article published on January 2005

Virulence and immune response induced by Mycobacterium avium complex strains in a model of progressive pulmonary tuberculosis and subcutaneous infection in BALB/c mice

scientific article published on 19 August 2013

Whole-Genome Sequence of Multidrug-Resistant Campylobacter coli Strain COL B1-266, Isolated from the Colombian Poultry Chain.

scientific article

Whole-Genome Sequences of 26 Vibrio cholerae Isolates.

scientific article published on 22 December 2016

Whole-Genome Sequences of Salmonella enterica Serovar I 4,[5],12:i:- Isolates from Swine

scientific article published on 23 May 2019

Whole-Genome Sequences of Two Campylobacter coli Isolates from the Antimicrobial Resistance Monitoring Program in Colombia

scientific article

Widespread positive selection in synonymous sites of mammalian genes

scientific article

Workflow and web application for annotating NCBI BioProject transcriptome data.

scientific article

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