List of works - Antti Honkela

A community effort to assess and improve drug sensitivity prediction algorithms.

scientific article

A generative approach for image-based modeling of tumor growth

scientific article

Analysis of differential splicing suggests different modes of short-term splicing regulation

scientific article published on June 2016

Bayesian identification of bacterial strains from sequencing data

scientific article

Differentially private Bayesian learning on distributed data ⬇️

Efficient differentially private learning improves drug sensitivity prediction

scientific article

Exploration and retrieval of whole-metagenome sequencing samples

scientific article

Gaussian process modelling of latent chemical species: applications to inferring transcription factor activities

scientific article published in August 2008

Gaussian process test for high-throughput sequencing time series: application to experimental evolution

scientific article published on 21 January 2015

Genome-wide modeling of transcription kinetics reveals patterns of RNA production delays ⬇️

scientific article

Identifying differentially expressed transcripts from RNA-seq data with biological variation ⬇️

scientific article

Identifying targets of multiple co-regulating transcription factors from expression time-series by Bayesian model comparison

scientific article published on 30 May 2012

Inference of RNA polymerase II transcription dynamics from chromatin immunoprecipitation time course data

scientific article

Mining regulatory network connections by ranking transcription factor target genes using time series expression data

scientific article

Model-based method for transcription factor target identification with limited data.

scientific article

On the inconsistency of ℓ 1-penalised sparse precision matrix estimation

scientific article

Predicting stimulation-dependent enhancer-promoter interactions from ChIP-Seq time course data

scientific article published on 28 September 2017

Privacy-preserving data sharing via probabilistic modeling

scientific article published in 2021

Probe Region Expression Estimation for RNA-Seq Data for Improved Microarray Comparability

scientific article

Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes

scientific article published on 16 September 2016

List of works by Antti Honkela

A community effort to assess and improve drug sensitivity prediction algorithms.

A generative approach for image-based modeling of tumor growth

Analysis of differential splicing suggests different modes of short-term splicing regulation

Bayesian identification of bacterial strains from sequencing data

Differentially private Bayesian learning on distributed data ⬇️

Efficient differentially private learning improves drug sensitivity prediction

Exploration and retrieval of whole-metagenome sequencing samples

Gaussian process modelling of latent chemical species: applications to inferring transcription factor activities

Gaussian process test for high-throughput sequencing time series: application to experimental evolution

Genome-wide modeling of transcription kinetics reveals patterns of RNA production delays ⬇️

Identifying differentially expressed transcripts from RNA-seq data with biological variation ⬇️

Identifying targets of multiple co-regulating transcription factors from expression time-series by Bayesian model comparison

Inference of RNA polymerase II transcription dynamics from chromatin immunoprecipitation time course data

Mining regulatory network connections by ranking transcription factor target genes using time series expression data

Model-based method for transcription factor target identification with limited data.

On the inconsistency of ℓ 1-penalised sparse precision matrix estimation

Predicting stimulation-dependent enhancer-promoter interactions from ChIP-Seq time course data

Privacy-preserving data sharing via probabilistic modeling

Probe Region Expression Estimation for RNA-Seq Data for Improved Microarray Comparability

Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes