List of works - Benjamin Schwessinger

A Near-Complete Haplotype-Phased Genome of the Dikaryotic Wheat Stripe Rust Fungus Puccinia striiformis f. sp. tritici Reveals High Interhaplotype Diversity.

scientific article published on 20 February 2018

A bacterial tyrosine phosphatase inhibits plant pattern recognition receptor activation

scientific article published on 13 March 2014

A chloroplast retrograde signal, 3'-phosphoadenosine 5'-phosphate, acts as a secondary messenger in abscisic acid signaling in stomatal closure and germination.

scientific article

A common signaling process that promotes mycorrhizal and oomycete colonization of plants

scientific article published in November 2012

A comprehensive toolkit to enable MinION long-read sequencing in any laboratory

A microbially derived tyrosine-sulfated peptide mimics a plant peptide hormone

scientific article published on 30 May 2017

A near complete haplotype-phased genome of the dikaryotic wheat stripe rust fungus Puccinia striiformis f. sp. tritici reveals high inter-haplotype diversity

article

A second-generation expression system for tyrosine-sulfated proteins and its application in crop protection

scientific article (publication date: 18 April 2016)

An XA21-associated kinase (OsSERK2) regulates immunity mediated by the XA21 and XA3 immune receptors

scientific article

Antagonistic regulation of growth and immunity by the Arabidopsis basic helix-loop-helix transcription factor homolog of brassinosteroid enhanced expression2 interacting with increased leaf inclination1 binding bHLH1

article

Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case

Bacterial Outer Membrane Vesicles Induce Plant Immune Responses

scientific article published on 29 February 2016

Brassinosteroids inhibit pathogen-associated molecular pattern-triggered immune signaling independent of the receptor kinase BAK1

scientific article published on 15 November 2011

Cautionary Notes on the Use of C-Terminal BAK1 Fusion Proteins for Functional Studies ⬇️

scientific article published on November 30, 2011

Changing SERKs and priorities during plant life

scientific article

Control of the pattern-recognition receptor EFR by an ER protein complex in plant immunity.

scientific article published on 17 September 2009

Correction: Transgenic expression of the dicotyledonous pattern recognition receptor EFR in rice leads to ligand-dependent activation of defense responses

scientific article published on 23 April 2015

De Novo Assembly and Phasing of Dikaryotic Genomes from Two Isolates of Puccinia coronata f. sp. avenae, the Causal Agent of Oat Crown Rust.

scientific article published on 20 February 2018

De novoassembly and phasing of dikaryotic genomes from two isolates ofPuccinia coronataf. sp.avenae, the causal agent of oat crown rust

article

Distribution and inheritance of a gene cluster encoding a sulfated tyrosine peptide in Xanthomonas spp

article

Emergence of the Ug99 lineage of the wheat stem rust pathogen through somatic hybridisation

scientific article published on 07 November 2019

Evaluating features of scientific conferences: A call for improvements

scientific article published on 03 April 2020

Extraction of High Molecular Weight DNA from Fungal Rust Spores for Long Read Sequencing

scientific article

Focus issue on plant immunity: from model systems to crop species

scientific article

Fundamental wheat stripe rust research in the 21st century

scientific article

Fungal phytopathogens encode functional homologues of plant rapid alkalinization factor (RALF) peptides

scientific article published on 13 June 2016

Genome Sequence of the Fungus Nannizziopsis barbatae, an Emerging Reptile Pathogen

scientific article published on 07 January 2021

Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

scientific article

Harnessing the MinION: An example of how to establish long-read sequencing in a laboratory using challenging plant tissue from Eucalyptus pauciflora

article

How postdocs benefit from building a union

scientific article

Inferring Species Compositions of Complex Fungal Communities from Long- and Short-Read Sequence Data

scientific article published on 11 April 2022

Inferring species compositions of complex fungal communities from long- and short-read sequence data

Long-Reads-Based Metagenomics in Clinical Diagnosis With a Special Focus on Fungal Infections

scientific article published in 2021

Long-read sequencing based clinical metagenomics for the detection and confirmation of Pneumocystis jirovecii directly from clinical specimens: A paradigm shift in mycological diagnostics

scientific article published on 23 November 2019

MinIONQC: fast and simple quality control for MinION sequencing data

article by Robert Lanfear et al published 1 February 2019 in Computer applications in the biosciences : CABIOS

News from the frontline: recent insights into PAMP-triggered immunity in plants

scientific article published on 03 July 2008

Non-arginine-aspartate (non-RD) kinases are associated with innate immune receptors that recognize conserved microbial signatures

scientific article published on 31 May 2012

On the value of preprints: An early career researcher perspective

scientific article published on 21 February 2019

OsSERK1 regulates rice development but not immunity to Xanthomonas oryzae pv. oryzae or Magnaporthe oryzae

scientific article

Phosphocode-dependent functional dichotomy of a common co-receptor in plant signalling

scientific article published in Nature

Phosphorylation-dependent differential regulation of plant growth, cell death, and innate immunity by the regulatory receptor-like kinase BAK1.

scientific article

Physical separation of haplotypes in dikaryons allows benchmarking of phasing accuracy in Nanopore and HiFi assemblies with Hi-C data

scientific article published on 25 March 2022

Plant innate immunity: perception of conserved microbial signatures

scientific article published on 09 February 2012

Proteome profile of the endomembrane of developing coleoptiles from switchgrass (Panicum virgatum).

scientific article published on 16 March 2015

Small ubiquitin-like modifier proteases OVERLY TOLERANT TO SALT1 and -2 regulate salt stress responses in Arabidopsis

scientific article

Structural Analysis of an Avr4 Effector Ortholog Offers Insight into Chitin Binding and Recognition by the Cf-4 Receptor.

scientific article published on 8 July 2016

The Arabidopsis leucine-rich repeat receptor-like kinases BAK1/SERK3 and BKK1/SERK4 are required for innate immunity to hemibiotrophic and biotrophic pathogens.

scientific article published on 21 June 2011

The First Annotated Genome Assembly of Macrophomina tecta Associated with Charcoal Rot of Sorghum

publication published on 01 May 2022

The Xanthomonas Ax21 protein is processed by the general secretory system and is secreted in association with outer membrane vesicles

scientific article published in 2014

The draft nuclear genome assembly of Eucalyptus pauciflora: a pipeline for comparing de novo assemblies

scientific article published on 01 January 2020

The rice XA21 ectodomain fused to the Arabidopsis EFR cytoplasmic domain confers resistance to Xanthomonas oryzae pv. oryzae.

scientific article

The rice immune receptor XA21 recognizes a tyrosine-sulfated protein from a Gram-negative bacterium

scientific article

The stem rust fungus Puccinia graminis f. sp. tritici induces centromeric small RNAs during late infection that are associated with genome-wide DNA methylation

scientific article published on 15 September 2021

Transgenic expression of the dicotyledonous pattern recognition receptor EFR in rice leads to ligand-dependent activation of defense responses

scientific article

Transposon-Mediated Horizontal Transfer of the Host-Specific Virulence Protein ToxA between Three Fungal Wheat Pathogens

scientific article published on 10 September 2019

Tyrosine sulfation in a Gram-negative bacterium

scientific article published in January 2012

Tyrosine-610 in the Receptor Kinase BAK1 Does Not Play a Major Role in Brassinosteroid Signaling or Innate Immunity.

scientific article published on 2 August 2017

Uncovering the microbiome of invasive sympatric European brown hares and European rabbits in Australia

scientific article published on 18 August 2020

Variation and inheritance of the Xanthomonas raxX-raxSTAB gene cluster required for activation of XA21-mediated immunity

scientific article published on 18 February 2019

XA21-specific induction of stress-related genes following Xanthomonas infection of detached rice leaves.

scientific article published on 28 September 2016

List of works by Benjamin Schwessinger

A Near-Complete Haplotype-Phased Genome of the Dikaryotic Wheat Stripe Rust Fungus Puccinia striiformis f. sp. tritici Reveals High Interhaplotype Diversity.

A bacterial tyrosine phosphatase inhibits plant pattern recognition receptor activation

A chloroplast retrograde signal, 3'-phosphoadenosine 5'-phosphate, acts as a secondary messenger in abscisic acid signaling in stomatal closure and germination.

A common signaling process that promotes mycorrhizal and oomycete colonization of plants

A comprehensive toolkit to enable MinION long-read sequencing in any laboratory

A microbially derived tyrosine-sulfated peptide mimics a plant peptide hormone

A near complete haplotype-phased genome of the dikaryotic wheat stripe rust fungus Puccinia striiformis f. sp. tritici reveals high inter-haplotype diversity

A second-generation expression system for tyrosine-sulfated proteins and its application in crop protection

An XA21-associated kinase (OsSERK2) regulates immunity mediated by the XA21 and XA3 immune receptors

Antagonistic regulation of growth and immunity by the Arabidopsis basic helix-loop-helix transcription factor homolog of brassinosteroid enhanced expression2 interacting with increased leaf inclination1 binding bHLH1

Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case

Bacterial Outer Membrane Vesicles Induce Plant Immune Responses

Brassinosteroids inhibit pathogen-associated molecular pattern-triggered immune signaling independent of the receptor kinase BAK1

Cautionary Notes on the Use of C-Terminal BAK1 Fusion Proteins for Functional Studies ⬇️

Changing SERKs and priorities during plant life

Control of the pattern-recognition receptor EFR by an ER protein complex in plant immunity.

Correction: Transgenic expression of the dicotyledonous pattern recognition receptor EFR in rice leads to ligand-dependent activation of defense responses

De Novo Assembly and Phasing of Dikaryotic Genomes from Two Isolates of Puccinia coronata f. sp. avenae, the Causal Agent of Oat Crown Rust.

De novoassembly and phasing of dikaryotic genomes from two isolates ofPuccinia coronataf. sp.avenae, the causal agent of oat crown rust

Distribution and inheritance of a gene cluster encoding a sulfated tyrosine peptide in Xanthomonas spp

Emergence of the Ug99 lineage of the wheat stem rust pathogen through somatic hybridisation

Evaluating features of scientific conferences: A call for improvements

Extraction of High Molecular Weight DNA from Fungal Rust Spores for Long Read Sequencing

Focus issue on plant immunity: from model systems to crop species

Fundamental wheat stripe rust research in the 21st century

Fungal phytopathogens encode functional homologues of plant rapid alkalinization factor (RALF) peptides

Genome Sequence of the Fungus Nannizziopsis barbatae, an Emerging Reptile Pathogen

Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

Harnessing the MinION: An example of how to establish long-read sequencing in a laboratory using challenging plant tissue from Eucalyptus pauciflora

How postdocs benefit from building a union

Inferring Species Compositions of Complex Fungal Communities from Long- and Short-Read Sequence Data

Inferring species compositions of complex fungal communities from long- and short-read sequence data

Long-Reads-Based Metagenomics in Clinical Diagnosis With a Special Focus on Fungal Infections

Long-read sequencing based clinical metagenomics for the detection and confirmation of Pneumocystis jirovecii directly from clinical specimens: A paradigm shift in mycological diagnostics

MinIONQC: fast and simple quality control for MinION sequencing data

News from the frontline: recent insights into PAMP-triggered immunity in plants

Non-arginine-aspartate (non-RD) kinases are associated with innate immune receptors that recognize conserved microbial signatures

On the value of preprints: An early career researcher perspective

OsSERK1 regulates rice development but not immunity to Xanthomonas oryzae pv. oryzae or Magnaporthe oryzae

Phosphocode-dependent functional dichotomy of a common co-receptor in plant signalling

Phosphorylation-dependent differential regulation of plant growth, cell death, and innate immunity by the regulatory receptor-like kinase BAK1.

Physical separation of haplotypes in dikaryons allows benchmarking of phasing accuracy in Nanopore and HiFi assemblies with Hi-C data

Plant innate immunity: perception of conserved microbial signatures

Proteome profile of the endomembrane of developing coleoptiles from switchgrass (Panicum virgatum).

Small ubiquitin-like modifier proteases OVERLY TOLERANT TO SALT1 and -2 regulate salt stress responses in Arabidopsis

Structural Analysis of an Avr4 Effector Ortholog Offers Insight into Chitin Binding and Recognition by the Cf-4 Receptor.

The Arabidopsis leucine-rich repeat receptor-like kinases BAK1/SERK3 and BKK1/SERK4 are required for innate immunity to hemibiotrophic and biotrophic pathogens.

The First Annotated Genome Assembly of Macrophomina tecta Associated with Charcoal Rot of Sorghum

The Xanthomonas Ax21 protein is processed by the general secretory system and is secreted in association with outer membrane vesicles

The draft nuclear genome assembly of Eucalyptus pauciflora: a pipeline for comparing de novo assemblies

The rice XA21 ectodomain fused to the Arabidopsis EFR cytoplasmic domain confers resistance to Xanthomonas oryzae pv. oryzae.

The rice immune receptor XA21 recognizes a tyrosine-sulfated protein from a Gram-negative bacterium

The stem rust fungus Puccinia graminis f. sp. tritici induces centromeric small RNAs during late infection that are associated with genome-wide DNA methylation

Transgenic expression of the dicotyledonous pattern recognition receptor EFR in rice leads to ligand-dependent activation of defense responses

Transposon-Mediated Horizontal Transfer of the Host-Specific Virulence Protein ToxA between Three Fungal Wheat Pathogens

Tyrosine sulfation in a Gram-negative bacterium

Tyrosine-610 in the Receptor Kinase BAK1 Does Not Play a Major Role in Brassinosteroid Signaling or Innate Immunity.

Uncovering the microbiome of invasive sympatric European brown hares and European rabbits in Australia

Variation and inheritance of the Xanthomonas raxX-raxSTAB gene cluster required for activation of XA21-mediated immunity

XA21-specific induction of stress-related genes following Xanthomonas infection of detached rice leaves.