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List of works by Jan P. Meier-Kolthoff

1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life

scientific article published on 12 June 2017

100-year-old enigma solved: identification, genomic characterization and biogeography of the yet uncultured Planctomyces bekefii

scientific article published on 11 November 2019

A publicly accessible database for Clostridioides difficile genome sequences supports tracing of transmission chains and epidemics

scientific article published on 29 July 2020

A single-cell genomics pipeline for environmental microbial eukaryotes

Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes

scientific article published on 23 September 2019

Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria

scientific article published on 07 April 2020

AxPcoords & parallel AxParafit: statistical co-phylogenetic analyses on thousands of taxa

scientific article

COPYCAT : cophylogenetic analysis tool

article

Cobaviruses – a new globally distributed phage group infecting Rhodobacteraceae in marine ecosystems

scientific article published on 04 February 2019

Comparative genomics of biotechnologically important yeasts

scientific article

Comparative genomics suggests mechanisms of genetic adaptation towards the catabolism of the phenylurea herbicide linuron in Variovorax

scientific article published on 02 May 2020

Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050(T) (DSM 19838(T)) and Gramella portivictoriae UST040801-001(T) (DSM 23547(T)), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 eme

scientific article published on 03 June 2016

Complete genome sequence of DSM 30083(T), the type strain (U5/41(T)) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy

scientific article published in 2014

Correction for Barka et al., Taxonomy, Physiology, and Natural Products of Actinobacteria

scientific article published on 9 November 2016

Correction: Genomic and Genetic Diversity within the Pseudomonas fluorescens Complex

scientific article published on 11 April 2016

Corrigendum: Genome-Based Taxonomic Classification of Bacteroidetes.

scientific article published on 21 February 2018

Erratum: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life

scholarly article published in Nature Biotechnology

Erratum: Corrigendum: The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota

scientific article published on 17 October 2016

First genome sequences of Achromobacter phages reveal new members of the N4 family

scientific article published on 27 January 2014

Genome sequence of the chemoheterotrophic soil bacterium Saccharomonospora cyanea type strain (NA-134(T)).

scientific article published on 30 September 2013

Genome sequence of the moderately thermophilic sulfur-reducing bacterium Thermanaerovibrio velox type strain (Z-9701(T)) and emended description of the genus Thermanaerovibrio

scientific article published on 02 October 2013

Genome sequence-based species delimitation with confidence intervals and improved distance functions

scientific article

Genome-Based Taxonomic Classification of Bacteroidetes

scientific article (publication date: 2016)

Genome-Based Taxonomic Classification of the Phylum

article published in 2018

Genome-Scale Data Call for a Taxonomic Rearrangement of Geodermatophilaceae

scientific article published on 19 December 2017

Genome-based classification of micromonosporae with a focus on their biotechnological and ecological potential

scientific article published on 11 January 2018

Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species

scientific article published on 08 January 2020

Genomic and Genetic Diversity within the Pseudomonas fluorescens Complex

scientific article

Genomic diversity within the haloalkaliphilic genus Thioalkalivibrio

scientific article

Genomic insights into the taxonomic status of the Bacillus cereus group

scientific article

High quality draft genome sequence of Flavobacterium rivuli type strain WB 3.3-2(T) (DSM 21788(T)), a valuable source of polysaccharide decomposing enzymes

scientific article

High-quality draft genome sequence of Flavobacterium suncheonense GH29-5(T) (DSM 17707(T)) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5(T)

scientific article published on 16 June 2016

Highly parallelized inference of large genome-based phylogenies

scholarly article by Jan P Meier-Kolthoff et al published 7 August 2013 in Concurrency and Computation: Practice and Experience

Improving Phylogeny Reconstruction at the Strain Level Using Peptidome Datasets

scientific article (publication date: 29 December 2016)

Investigation of recombination-intense viral groups and their genes in the Earth's virome

scientific article published in Scientific Reports

Large-Scale Co-Phylogenetic Analysis on the Grid

scholarly article published January 2009

Large-Scale Co-Phylogenetic Analysis on the Grid

scholarly article

List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ

scientific article published on 23 July 2020

Panoramic Insights into Microevolution and Macroevolution of A Prevotella copri-containing Lineage in Primate Guts

Pathways and substrate-specific regulation of amino acid degradation in Phaeobacter inhibens DSM 17395 (archetype of the marine Roseobacter clade).

scientific article published on 27 October 2013

Phylogenomic Analysis of the Gammaproteobacterial Methanotrophs (Order ) Calls for the Reclassification of Members at the Genus and Species Levels

scientific article published in 2018

Phylogenomic Study of Burkholderia glathei-like Organisms, Proposal of 13 Novel Burkholderia Species and Emended Descriptions of Burkholderia sordidicola, Burkholderia zhejiangensis, and Burkholderia grimmiae

scientific article

Phylogenomics of Rhodobacteraceae reveals evolutionary adaptation to marine and non-marine habitats

scientific article published on 20 January 2017

Prevotella illustrans sp. nov., derived from human oropharyngeal abscess puncture fluid

scholarly article published in 2021

Proposal of a type strain for Frankia alni (Woronin 1866) Von Tubeuf 1895, emended description of Frankia alni, and recognition of Frankia casuarinae sp. nov. and Frankia elaeagni sp. nov.

scientific article

Reclassification of Haloactinobacterium glacieicola as Occultella glacieicola gen. nov., comb. nov., of Haloactinobacterium album as Ruania alba comb. nov, with an emended description of the genus Ruania, recognition that the genus names Haloactinoba

scientific article published in 2021

Sequence-based analysis of the genus Ruminococcus resolves its phylogeny and reveals strong host association.

scientific article published on 12 December 2016

Sphingomonas aliaeris sp. nov., a new species isolated from pork steak packed under modified atmosphere

scientific article published in 2021

Still Something to Discover: Novel Insights intoEscherichia coli Phage Diversity and Taxonomy.

scientific article

Streptomyces jeddahensis sp. nov., an oleaginous bacterium isolated from desert soil

scientific article

TYGS and LPSN: a database tandem for fast and reliable genome-based classification and nomenclature of prokaryotes

scientific article published on 01 January 2022

TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy

Taxonomic use of DNA G+C content and DNA-DNA hybridization in the genomic age.

scientific article

The Biofilm Inhibitor Carolacton Enters Gram-Negative Cells: Studies Using a TolC-Deficient Strain of Escherichia coli

scientific article published on 27 September 2017

Trajectories and Drivers of Genome Evolution in Surface-Associated Marine Phaeobacter

scientific article

VICTOR: Genome-based Phylogeny and Classification of Prokaryotic Viruses

scholarly article published 11 February 2017

VICTOR: genome-based phylogeny and classification of prokaryotic viruses

scientific article published on 7 July 2017

Welcher Coli ist ein Coli? Sequenzierung des Typstamms von Escherichia coli

scientific article published in 2015

When should a DDH experiment be mandatory in microbial taxonomy?

scientific article published on 17 April 2013

Whole genome-based taxonomy of Shewanella and Parashewanella

scientific article published in 2022

Whole-Genome Sequencing Redefines Shewanella Taxonomy

scientific article published on 28 August 2019

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