List of works - David Langenberger

A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection

scientific article

Alu elements in ANRIL non-coding RNA at chromosome 9p21 modulate atherogenic cell functions through trans-regulation of gene networks

scientific article

Computational prediction of microRNA genes

scientific article published on January 2014

DARIO: a ncRNA detection and analysis tool for next-generation sequencing experiments

scientific article published on 27 May 2011

Dicer-Processed Small RNAs: Rules and Exceptions

article

EpiDiverse Toolkit: a pipeline suite for the analysis of bisulfite sequencing data in ecological plant epigenetics

scientific article published on 12 November 2021

Evidence for human microRNA-offset RNAs in small RNA sequencing data

scientific article

Identification and classification of small RNAs in transcriptome sequence data.

scientific article

In silico target network analysis of de novo-discovered, tick saliva-specific microRNAs reveals important combinatorial effects in their interference with vertebrate host physiology

scientific article

MYC/MIZ1-dependent gene repression inversely coordinates the circadian clock with cell cycle and proliferation.

scientific article

Mapping the RNA-Seq trash bin: unusual transcripts in prokaryotic transcriptome sequencing data.

scientific article

Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis

scientific article published in 2010

Recurrent mutation of the ID3 gene in Burkitt lymphoma identified by integrated genome, exome and transcriptome sequencing

scientific article

Signatures of mutational processes in human cancer

scientific article (publication date: 22 August 2013)

TargetSpy: a supervised machine learning approach for microRNA target prediction

scientific article

Traces of post-transcriptional RNA modifications in deep sequencing data

scientific article

deepBlockAlign: a tool for aligning RNA-seq profiles of read block patterns

scientific article

miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments

scientific article

microRNA target predictions across seven Drosophila species and comparison to mammalian targets

scientific article

plantDARIO: web based quantitative and qualitative analysis of small RNA-seq data in plants

scientific article

List of works by David Langenberger

A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection

Alu elements in ANRIL non-coding RNA at chromosome 9p21 modulate atherogenic cell functions through trans-regulation of gene networks

Computational prediction of microRNA genes

DARIO: a ncRNA detection and analysis tool for next-generation sequencing experiments

Dicer-Processed Small RNAs: Rules and Exceptions

EpiDiverse Toolkit: a pipeline suite for the analysis of bisulfite sequencing data in ecological plant epigenetics

Evidence for human microRNA-offset RNAs in small RNA sequencing data

Identification and classification of small RNAs in transcriptome sequence data.

In silico target network analysis of de novo-discovered, tick saliva-specific microRNAs reveals important combinatorial effects in their interference with vertebrate host physiology

MYC/MIZ1-dependent gene repression inversely coordinates the circadian clock with cell cycle and proliferation.

Mapping the RNA-Seq trash bin: unusual transcripts in prokaryotic transcriptome sequencing data.

Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis

Recurrent mutation of the ID3 gene in Burkitt lymphoma identified by integrated genome, exome and transcriptome sequencing

Signatures of mutational processes in human cancer

TargetSpy: a supervised machine learning approach for microRNA target prediction

Traces of post-transcriptional RNA modifications in deep sequencing data

deepBlockAlign: a tool for aligning RNA-seq profiles of read block patterns

miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments

microRNA target predictions across seven Drosophila species and comparison to mammalian targets

plantDARIO: web based quantitative and qualitative analysis of small RNA-seq data in plants