List of works - David C Grainger

A conserved acidic amino acid mediates the interaction between modulators and co-chaperones in enterobacteria.

scientific article

Association of nucleoid proteins with coding and non-coding segments of the Escherichia coli genome.

scientific article published on 08 September 2006

Autoregulation of the Escherichia coli melR promoter: repression involves four molecules of MelR.

scientific article published on 16 March 2008

Binding of the Escherichia coli MelR protein to the melAB promoter: orientation of MelR subunits and investigation of MelR-DNA contacts.

scientific article

Chromosomal macrodomains and associated proteins: implications for DNA organization and replication in gram negative bacteria

scientific article

Chromosome organization in bacteria: mechanistic insights into genome structure and function

scientific article published on 25 November 2019

CsrA maximizes expression of the AcrAB multidrug resistance transporter

scientific article published on 13 October 2017

DNA recognition by Escherichia coli CbpA protein requires a conserved arginine-minor-groove interaction

scientific article

Determination of the 3D Genome Organization of Bacteria Using Hi-C

scientific article published on 01 January 2018

Dimerization and DNA-dependent aggregation of the Escherichia coli nucleoid protein and chaperone CbpA.

scientific article published on September 2010

Direct methods for studying transcription regulatory proteins and RNA polymerase in bacteria.

scientific article published on 15 September 2009

Dissecting regulatory networks in host-pathogen interaction using chIP-on-chip technology

scientific article published on May 2009

E. coli Fis Protein Insulates the cbpA Gene from Uncontrolled Transcription ⬇️

scientific article published on January 17, 2013

Effects of nucleoid-associated proteins on bacterial chromosome structure and gene expression ⬇️

scientific article published on October 13, 2010

Escherichia coli σ 70 senses sequence and conformation of the promoter spacer region ⬇️

scientific article published on March 11, 2011

Extensive functional overlap between sigma factors in Escherichia coli.

scientific article

Genome-wide identification of binding sites for the nitric oxide-sensitive transcriptional regulator NsrR.

scientific article published on January 2008

Genomic studies with Escherichia coli MelR protein: applications of chromatin immunoprecipitation and microarrays.

scientific article

Global regulators of transcription in Escherichia coli: mechanisms of action and methods for study.

scientific article published on January 2008

H-NS and RNA polymerase: a love-hate relationship?

scientific article

H-NS can facilitate specific DNA-binding by RNA polymerase in AT-rich gene regulatory regions.

scientific article

Horizontally acquired AT-rich genes in Escherichia coli cause toxicity by sequestering RNA polymerase

scientific article published on 9 January 2017

Multidisciplinary perspectives on bacterial genome organization and dynamics

article

Pervasive transcription: illuminating the dark matter of bacterial transcriptomes

scientific article published on 28 July 2014

Selective repression by Fis and H-NS at the Escherichia coli dps promoter.

scientific article

Spurious transcription and its impact on cell function.

scientific article published on 5 October 2017

Structure and function of bacterial H-NS protein.

scientific article published on December 2016

Studies of the distribution of Escherichia coli cAMP-receptor protein and RNA polymerase along the E. coli chromosome.

scientific article

The Escherichia coli K-12 MntR miniregulon includes dps, which encodes the major stationary-phase DNA-binding protein

scientific article

The Escherichia coli MarA protein regulates the ycgZ-ymgABC operon to inhibit biofilm formation

scientific article published on 29 September 2019

The Escherichia coli Nucleoid in Stationary Phase.

scientific article published in January 2013

The Escherichia coli RutR transcription factor binds at targets within genes as well as intergenic regions.

scientific article

The Escherichia coli multiple antibiotic resistance activator protein represses transcription of the lac operon

scientific article published on 08 March 2019

The molecular basis for control of ETEC enterotoxin expression in response to environment and host

scientific article

The multiple antibiotic resistance operon of enteric bacteria controls DNA repair and outer membrane integrity

scientific article published on 13 November 2017

The quorum sensing transcription factor AphA directly regulates natural competence in Vibrio cholerae

scientific article published on 28 October 2019

The unexpected complexity of bacterial genomes

scientific article published on July 2016

Transcription activation at the Escherichia coli melAB promoter: interactions of MelR with its DNA target site and with domain 4 of the RNA polymerase sigma subunit.

scientific article published in March 2004

Transcription activation at the Escherichia coli melAB promoter: interactions of MelR with the C-terminal domain of the RNA polymerase alpha subunit

scientific article published in March 2004

Transcription factor distribution in Escherichia coli: studies with FNR protein.

scientific article published on 12 December 2006

Unusually Situated Binding Sites for Bacterial Transcription Factors Can Have Hidden Functionality

scientific article

Waking the neighbours: disruption of H-NS repression by overlapping transcription.

scientific article published on 23 February 2018

Widespread divergent transcription from bacterial and archaeal promoters is a consequence of DNA-sequence symmetry

scientific article published on 06 May 2021

Widespread suppression of intragenic transcription initiation by H-NS.

scientific article published on 21 January 2014

Xenogeneic silencing strategies in bacteria are dictated by RNA polymerase promiscuity

scientific article published on 03 March 2022

cAMP Receptor Protein Controls Vibrio cholerae Gene Expression in Response to Host Colonization

article

List of works by David C Grainger

A conserved acidic amino acid mediates the interaction between modulators and co-chaperones in enterobacteria.

Association of nucleoid proteins with coding and non-coding segments of the Escherichia coli genome.

Autoregulation of the Escherichia coli melR promoter: repression involves four molecules of MelR.

Binding of the Escherichia coli MelR protein to the melAB promoter: orientation of MelR subunits and investigation of MelR-DNA contacts.

Chromosomal macrodomains and associated proteins: implications for DNA organization and replication in gram negative bacteria

Chromosome organization in bacteria: mechanistic insights into genome structure and function

CsrA maximizes expression of the AcrAB multidrug resistance transporter

DNA recognition by Escherichia coli CbpA protein requires a conserved arginine-minor-groove interaction

Determination of the 3D Genome Organization of Bacteria Using Hi-C

Dimerization and DNA-dependent aggregation of the Escherichia coli nucleoid protein and chaperone CbpA.

Direct methods for studying transcription regulatory proteins and RNA polymerase in bacteria.

Dissecting regulatory networks in host-pathogen interaction using chIP-on-chip technology

E. coli Fis Protein Insulates the cbpA Gene from Uncontrolled Transcription ⬇️

Effects of nucleoid-associated proteins on bacterial chromosome structure and gene expression ⬇️

Escherichia coli σ 70 senses sequence and conformation of the promoter spacer region ⬇️

Extensive functional overlap between sigma factors in Escherichia coli.

Genome-wide identification of binding sites for the nitric oxide-sensitive transcriptional regulator NsrR.

Genomic studies with Escherichia coli MelR protein: applications of chromatin immunoprecipitation and microarrays.

Global regulators of transcription in Escherichia coli: mechanisms of action and methods for study.

H-NS and RNA polymerase: a love-hate relationship?

H-NS can facilitate specific DNA-binding by RNA polymerase in AT-rich gene regulatory regions.

Horizontally acquired AT-rich genes in Escherichia coli cause toxicity by sequestering RNA polymerase

Multidisciplinary perspectives on bacterial genome organization and dynamics

Pervasive transcription: illuminating the dark matter of bacterial transcriptomes

Selective repression by Fis and H-NS at the Escherichia coli dps promoter.

Spurious transcription and its impact on cell function.

Structure and function of bacterial H-NS protein.

Studies of the distribution of Escherichia coli cAMP-receptor protein and RNA polymerase along the E. coli chromosome.

The Escherichia coli K-12 MntR miniregulon includes dps, which encodes the major stationary-phase DNA-binding protein

The Escherichia coli MarA protein regulates the ycgZ-ymgABC operon to inhibit biofilm formation

The Escherichia coli Nucleoid in Stationary Phase.

The Escherichia coli RutR transcription factor binds at targets within genes as well as intergenic regions.

The Escherichia coli multiple antibiotic resistance activator protein represses transcription of the lac operon

The molecular basis for control of ETEC enterotoxin expression in response to environment and host

The multiple antibiotic resistance operon of enteric bacteria controls DNA repair and outer membrane integrity

The quorum sensing transcription factor AphA directly regulates natural competence in Vibrio cholerae

The unexpected complexity of bacterial genomes

Transcription activation at the Escherichia coli melAB promoter: interactions of MelR with its DNA target site and with domain 4 of the RNA polymerase sigma subunit.

Transcription activation at the Escherichia coli melAB promoter: interactions of MelR with the C-terminal domain of the RNA polymerase alpha subunit

Transcription factor distribution in Escherichia coli: studies with FNR protein.

Unusually Situated Binding Sites for Bacterial Transcription Factors Can Have Hidden Functionality

Waking the neighbours: disruption of H-NS repression by overlapping transcription.

Widespread divergent transcription from bacterial and archaeal promoters is a consequence of DNA-sequence symmetry

Widespread suppression of intragenic transcription initiation by H-NS.

Xenogeneic silencing strategies in bacteria are dictated by RNA polymerase promiscuity

cAMP Receptor Protein Controls Vibrio cholerae Gene Expression in Response to Host Colonization