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List of works by Mark A. Musen

A Bayesian network model for analysis of detection performance in surveillance systems.

scientific article

A Client-Server Framework for Deploying a Decision-support System in a Resource-constrained Environment.

scientific article published in January 2001

A Comprehensive Analysis of Five Million UMLS Metathesaurus Terms Using Eighteen Million MEDLINE Citations

scientific article

A Framework for Ontology Evolution in Collaborative Environments

scientific article published in ISWC 2006

A Method to Compare ICF and SNOMED CT for Coverage of U.S. Social Security Administration's Disability Listing Criteria

scientific article published on 5 November 2015

A Study on the Atomic Decomposition of Ontologies

scientific article published at ISWC 2014

A System for Ontology-Based Annotation of Biomedical Data

article

A Systematic Analysis of Term Reuse and Term Overlap across Biomedical Ontologies

scientific article

A Typology for Modeling Processes in Clinical Guidelines and Protocols

A Typology for Modeling Processes in Clinical Guidelines and Protocols

A WebProtégé Plugin for Attesting to the Provenance of Ontologies on the Ethereum Blockchain

scientific article published in proceedings of the iswc 2021 posters, demos and industry tracks: from novel ideas to industrial practice

A comparison of the temporal expressiveness of three database query methods

scientific article published on January 1995

A comparison of two computer-based prognostic systems for AIDS

scientific article published on January 1995

A computer-based approach to quality improvement for telephone triage in a community AIDS clinic

scientific article published in January 1994

A computer-based tool for generation of progress notes.

scientific article

A declarative explanation framework that uses a collection of visualization agents

scientific article

A flexible approach to guideline modeling

scientific article

A formal method to resolve temporal mismatches in clinical databases.

scientific article published on January 2001

A foundational model of time for heterogeneous clinical databases

scientific article

A framework for evidence-adaptive quality assessment that unifies guideline-based and performance-indicator approaches

scientific article

A knowledge base driven user interface for collaborative ontology development

article

A knowledge-acquisition wizard to encode guidelines

scientific article

A knowledge-based approach to defining syndromes.

scientific article published in March 2003

A knowledge-based method for surveillance.

scientific article published in March 2003

A logical foundation for representation of clinical data

scientific article

A methodology for determining patients' eligibility for clinical trials

scientific article published on 01 August 1993

A model for critiquing based on automated medical records

scientific article published on August 1991

A more decentralized vision for Linked Data

scientific article

A multiple-method knowledge-acquisition shell for the automatic generation of knowledge-acquisition tools

A needs analysis for computer-based telephone triage in a community AIDS clinic

scientific article

A problem-solving model for episodic skeletal-plan refinement

A prototype symbolic model of canonical functional neuroanatomy of the motor system

scientific article

A rational reconstruction of INTERNIST-I using PROTEGE-II.

scientific article published on January 1995

A temporal database mediator for protocol-based decision support

scientific article

A temporal query system for protocol-directed decision support

scientific article published on October 1994

A temporal-abstraction mediator for protocol-based decision-support systems.

scientific article

A temporal-abstraction system for patient monitoring

scientific article

A unified software framework for deriving, visualizing, and exploring abstraction networks for ontologies

scientific article published on 23 June 2016

A virtual medical record for guideline-based decision support

scientific article

A web-based architecture for a medical vocabulary server.

scientific article published on January 1995

AIDS2: a decision-support tool for decreasing physicians' uncertainty regarding patient eligibility for HIV treatment protocols

scientific article

AMIA Board white paper: definition of biomedical informatics and specification of core competencies for graduate education in the discipline

scientific article published on 8 June 2012

ARGOS policy brief on semantic interoperability

scientific article published on January 2011

AgroPortal: A vocabulary and ontology repository for agronomy

Aligning Biomedical Metadata with Ontologies Using Clustering and Embeddings

scientific article published in 2019

An Ontology-Driven Framework for Deploying JADE Agent Systems

An Open Repository Model for Acquiring Knowledge About Scientific Experiments

article

An analytic framework fo space-time aberrancy detection in public health surveillance data

scientific article

An editor for the conceptual models of interactive knowledge-acquisition tools

An efficient approach to intelligent real-time monitoring using ontologies and Hadoop

An empirical analysis of ontology reuse in BioPortal

scientific article published on 02 June 2017

An empirical meta-analysis of the life sciences linked open data on the web

scientific article

An empirically derived taxonomy of errors in SNOMED CT.

scientific article published on 14 November 2014

An evaluation model for syndromic surveillance: assessing the performance of a temporal algorithm.

scientific article published in August 2005

An extended SQL for temporal data management in clinical decision-support systems

scientific article

An intelligent case-adjustment algorithm for the automated design of population-based quality auditing protocols.

scientific article published in January 2004

An ontology-driven tool for structured data acquisition using Web forms.

scientific article

An ontology-neutral framework for enrichment analysis

scientific article

Analysis and Prediction of User Editing Patterns in Ontology Development Projects

scientific article

Analysis of User Editing Patterns in Ontology Development Projects

article

Analyzing user interactions with biomedical ontologies: A visual perspective

Annotation and query of tissue microarray data using the NCI Thesaurus

scientific article

Applications of ontology design patterns in biomedical ontologies

scientific article published on 3 November 2012

Applied ontology: The next decade begins

article by Nicola Guarino & Mark A. Musen published 20 May 2015 in Applied Ontology

Applying temporal joins to clinical databases.

scientific article

Architectures for architects

scientific article published on 01 January 1993

Architectures for intelligent systems based on reusable components

scientific article published in June 1995

Automated Support for Building and Extending Expert Models

Automated modeling of medical decisions

scientific article

Automating Identification of Multiple Chronic Conditions in Clinical Practice Guidelines

scientific article published on 25 March 2015

BiOnIC: A Catalog of User Interactions with Biomedical Ontologies

BioPortal as a Dataset of Linked Biomedical Ontologies and Terminologies in RDF

scientific article

BioPortal: A Web Repository for Biomedical Ontologies and Data Resources

scientific article published in iswc2008 posters and demonstrations

BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications

scientific article (publication date: July 2011)

BioPortal: ontologies and data resources with the click of a mouse.

scientific article

BioPortal: ontologies and integrated data resources at the click of a mouse

scientific article (publication date: July 2009)

BioSTORM: a system for automated surveillance of diverse data sources

scientific article published in January 2003

Biomedical informatics--a confluence of disciplines?

scientific article published in January 2011

Bioterrorism preparedness and response: use of information technologies and decision support systems.

scientific article

Breast cancer on the world wide web: cross sectional survey of quality of information and popularity of websites

scientific article

Building a biomedical ontology recommender web service

scientific article (publication date: 22 June 2010)

Building an explanation function for a hypertension decision-support system.

scientific article published in January 2001

CALIPER: individualized-growth curves for the monitoring of children's growth.

scientific article published in January 1995

CEDAR OnDemand: a browser extension to generate ontology-based scientific metadata

scientific article published on 16 July 2018

Calling on a million minds for community annotation in WikiProteins

scientific article

Challenges for Medical Informatics as an Academic Discipline: Workshop Report

scientific article

Challenges in Medical Informatics. A Discipline Coming of Age

Challenges in converting frame-based ontology into OWL: the Foundational Model of Anatomy case-study

scientific article

Chapter 9: Analyses using disease ontologies

scientific article

Clinical Decision-Support Systems

article

Collaborative Computational Technologies for Biomedical Research

Collaborative Development of Large-Scale Biomedical Ontologies

article

Collaborative Protege: Enabling Community-based Authoring of Ontologies

scientific article published in iswc2008 posters and demonstrations

Collecting Community-Based Mappings in an Ontology Repository

scientific article published in ISWC 2008

Comparison of computer-aided and human review of general practitioners' management of hypertension

scientific article published on December 1991

Comparison of concept recognizers for building the Open Biomedical Annotator

scientific article

Comparison of ontology-based semantic-similarity measures

scientific article

Computational neuroanatomy: ontology-based representation of neural components and connectivity

scientific article

Computer-based screening of patients with HIV/AIDS for clinical-trial eligibility

scientific article published on 01 March 1995

Conceptual models for automatic generation of knowledge-acquisition tools

Conceptual models of interactive knowledge acquisition tools

Configuring online problem-solving resources with the Internet Reasoning Service

Construction and Usage of a Human Body Common Coordinate Framework Comprising Clinical, Semantic, and Spatial Ontologies

preprint

Contextualizing heterogeneous data for integration and inference.

scientific article

Creating Semantic Web contents with Protege-2000

Creating a Translational Medicine Ontology

Creating a Translational Medicine Ontology

Creating mappings for ontologies in biomedicine: simple methods work.

scientific article

Critiquing Physician Decision Making Using Data from Automated Medical Records: Assessing the Limitations

Cross-domain targeted ontology subsets for annotation: the case of SNOMED CORE and RxNorm

scientific article published on October 2013

Crowdsourcing the verification of relationships in biomedical ontologies

scientific article (publication date: 2013)

Data breaches of protected health information in the United States

scientific article

DataStorm An Ontology-Driven Framework for Cloud-Based Data Analytic Systems

scholarly article published July 2010

Deriving an abstraction network to support quality assurance in OCRe.

scientific article published on 3 November 2012

Design and use of clinical ontologies: curricular goals for the education of health-telematics professionals

scientific article published on January 2000

Design of a FAIR digital data health infrastructure in Africa for COVID-19 reporting and research

scientific article published on 11 June 2021

Developing biomedical ontologies collaboratively

scientific article

Developing quality indicators and auditing protocols from formal guideline models: knowledge representation and transformations

scientific article

Development of a controlled medical terminology: knowledge acquisition and knowledge representation

scientific article published in March 1995

Development of large-scale functional brain networks in children

scientific article

Dimensions of knowledge sharing and reuse

scientific article published on October 1, 1992

Discovering beaten paths in collaborative ontology-engineering projects using Markov chains

scientific article

Discussion of "biomedical ontologies: toward scientific debate".

scientific article published on May 2011

Domain ontologies in software engineering: use of Protégé with the EON architecture

scientific article

EON 2.0: Enhanced Middleware for Automation of Protocol-Directed Therapy

scientific article published in January 1999

EON: a component-based approach to automation of protocol-directed therapy

scientific article

EZPAL: Environment for composing constraint axioms by instantiating templates

Effects of Evidence-Based Explanations of Clinical Guideline Recommendations on Clinical Decision-Making

scientific article published in January 1999

Electronic patient records in medical practice: a multidisciplinary endeavor.

scientific article

Embracing Semantic Technology for Better Metadata Authoring in Biomedicine

Empowering industrial research with shared biomedical vocabularies

scientific article (publication date: November 2011)

Enabling Web-scale data integration in biomedicine through Linked Open Data

scientific article published on 10 September 2019

Enabling enrichment analysis with the Human Disease Ontology

scientific article

Episodic skeletal-plan refinement based on temporal data

article by Samson W. Tu et al published 1 December 1989 in Communications of the ACM

Evaluating detection of an inhalational anthrax outbreak

scientific article published on December 2006

Evaluating provider adherence in a trial of a guideline-based decision support system for hypertension.

scientific article published in January 2004

Explanations for a Hypertension Decision Support System

FAIR Convergence Matrix: Optimizing the Reuse of Existing FAIR-Related Resources

Fast and Accurate Metadata Authoring Using Ontology-Based Recommendations.

scientific article published in January 2017

From guideline modeling to guideline execution: defining guideline-based decision-support services

scientific article

From mappings to modules

Generation of knowledge-acquisition tools from domain ontologies

Getting Lucky in Ontology Search: A Data-Driven Evaluation Framework for Ontology Ranking

scientific article published at ISWC 2013

Graph-grammar assistance for automated generation of influence diagrams

article

Graph-grammar productions for the modeling of medical dilemmas

scientific article

Graphical access to medical expert systems: III. Design of a knowledge acquisition environment

scientific article published in July 1987

Helping Users Bootstrap Ontologies

Hierarchical neural networks for survival analysis.

scientific article published in January 1995

High-Risk Drug-Drug Interactions Between Clinical Practice Guidelines for Management of Chronic Conditions

scientific article

HopRank: How Semantic Structure Influences Teleportation in PageRank (A Case Study on BioPortal)

scientific article

How Ontologies are Made: Studying the Hidden Social Dynamics Behind Collaborative Ontology Engineering Projects

scientific article (publication date: May 2013)

How Sustainable are Biomedical Ontologies?

scientific article published on 5 December 2018

How orthogonal are the OBO Foundry ontologies?

scientific article

How should we organize to do informatics? Report of the ACMI Debate at the 1997 AMIA Fall Symposium

scientific article

How to apply Markov chains for modeling sequential edit patterns in collaborative ontology-engineering projects

IFIP conference on intelligent information processing

Identifying barriers to hypertension guideline adherence using clinician feedback at the point of care.

scientific article published on January 2006

Implementing clinical practice guidelines while taking account of changing evidence: ATHENA DSS, an easily modifiable decision-support system for managing hypertension in primary care

scientific article

Improving data and knowledge management to better integrate health care and research.

scientific article

Integrating a modern knowledge-based system architecture with a legacy VA database: the ATHENA and EON projects at Stanford

scientific article

Integration and beyond: linking information from disparate sources and into workflow

scientific article (publication date: 2000)

Integration and beyond: panel discussion

scientific article

Integration and publication of heterogeneous text-mined relationships on the Semantic Web

scientific article (publication date: 17 May 2011)

Integration of textual guideline documents with formal guideline knowledge bases

scientific article

Intermed: An Internet-based Medical Collaboratory

scientific article

Interpretation errors related to the GO annotation file format.

scientific article published on 11 October 2007

Interpretation of biological experiments changes with evolution of the Gene Ontology and its annotations

scientific article published on 23 March 2018

Investigating Term Reuse and Overlap in Biomedical Ontologies.

scientific article

Is the crowd better as an assistant or a replacement in ontology engineering? An exploration through the lens of the Gene Ontology

scientific article published on 9 February 2016

Justification of automated decision-making: medical explanations as medical arguments.

scientific article

Knowledge Representation

scientific article

Knowledge Zone: a public repository of peer-reviewed biomedical ontologies.

scientific article

Knowledge acquisition for temporal abstraction

scientific article

Knowledge acquisition for temporal-abstraction mechanisms

article published in 1992

Knowledge engineering for a clinical trial advice system: uncovering errors in protocol specification

scientific article published on 01 January 1987

Knowledge engineering for clinical consultation programs: modeling the application area

scientific article published in January 1989

Knowledge representation and tool support for critiquing clinical trial protocols

scientific article

Knowledge reuse: temporal-abstraction mechanisms for the assessment of children's growth.

scientific article

Knowledge-based bioterrorism surveillance

scientific article

Knowledge-based temporal abstraction for diabetic monitoring

scientific article

Knowledge-based temporal abstraction in clinical domains

scientific article published on July 1996

Knowledge-based temporal abstraction in diabetes therapy.

scientific article published on January 1995

Learning rare categories in backpropagation

Linking ontologies with three-dimensional models of anatomy to predict the effects of penetrating injuries

scientific article published on January 2004

Making Biomedical Ontologies and Ontology Repositories Work

Making generic guidelines site-specific

scientific article

Mapping Master: A Flexible Approach for Mapping Spreadsheets to OWL

article published in 2010

Mechanical turk as an ontology engineer?

article

Mechanism-based Pharmacovigilance over the Life Sciences Linked Open Data Cloud.

scientific article

Medical Quality Assessment by Scoring Adherence to Guideline Intentions.

scientific article published in January 2002

Medical informatics: searching for underlying components

scientific article published on January 2002

Medical quality assessment by scoring adherence to guideline intentions.

scientific article

Metatools for knowledge acquisition

Modeling community standards for metadata as templates makes data FAIR

scientific article published in 2022

Modeling data and knowledge in the EON guideline architecture

scientific article

Modeling guidelines for integration into clinical workflow

scientific article published on 01 January 2004

Modeling tasks with mechanisms

Modern architectures for intelligent systems: reusable ontologies and problem-solving methods.

scientific article

Modular Neural Networks for Medical Prognosis: Quantifying the Benefits of Combining Neural Networks for Survival Prediction

NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation

scientific article

NCBO Resource Index: Ontology-Based Search and Mining of Biomedical Resources

scientific article

National Center for Biomedical Ontology: advancing biomedicine through structured organization of scientific knowledge

scientific article

Network analysis of intrinsic functional brain connectivity in Alzheimer's disease

scientific article

OBO to OWL: a protege OWL tab to read/save OBO ontologies

scientific article

OPAL: Toward the Computer-Aided Design of Oncology Advice Systems.

scientific article

Obstacles to the reuse of study metadata in ClinicalTrials.gov

scientific article published on 18 December 2020

Obstacles to the reuse of study metadata in ClinicalTrials.gov

scientific article

Ontology Development for the Masses: Creating ICD-11 in WebProtégé

article

Ontology Repositories and Semantic Artefact Catalogues with the OntoPortal Technology.

scientific article published at ISWC 2023 resource track.

Ontology acquisition from on-line knowledge sources

scientific article published on January 2000

Ontology metadata to support the building of a library of biomedical ontologies

scientific article published in January 2005

Ontology versioning in an ontology management framework

Ontology-Centered Syndromic Surveillance for Bioterrorism

Ontology-based annotation and query of tissue microarray data.

scientific article

Ontology-based configuration of problem-solving methods and generation of knowledge-acquisition tools: application of PROTEGE-II to protocol-based decision support.

scientific article published on June 1995

Ontology-based representation of simulation models of physiology.

scientific article published on January 2006

Ontology-driven indexing of public datasets for translational bioinformatics

scientific article

Optimize First, Buy Later: Analyzing Metrics to Ramp-Up Very Large Knowledge Bases

article published in 2010

OrderRex clinical user testing: a randomized trial of recommender system decision support on simulated cases

scientific article published on 27 October 2020

Organizational factors affecting implementation of the ATHENA-Hypertension clinical decision support system during the VA’s nation-wide information technology restructuring: a case study

scientific article

Overcoming the limitations of role-limiting methods

article by Mark A. Musen published June 1992 in International Journal of Human-Computer Studies

PROTEGE-II: a suite of tools for development of intelligent systems from reusable components

scientific article published on January 1994

PROTEGE-II: computer support for development of intelligent systems from libraries of components.

scientific article published on January 1995

Patient Safety in Guideline-Based Decision Support for Hypertension Management: ATHENA DSS.

scientific article published in January 2002

Patient care applications on Internet

scientific article

Patient safety in guideline-based decision support for hypertension management: ATHENA DSS

scientific article

PhLeGrA: Graph Analytics in Pharmacology over the Web of Life Sciences Linked Open Data

scholarly article published April 2017

Physician Usage and Acceptance of a Machine Learning Recommender System for Simulated Clinical Order Entry

scientific article published on 30 May 2020

Plan Recognition and Revision in Protocol-Based Care

scientific article

Post-fielding Surveillance of a Guideline-based Decision Support System

scientific article published on January 21, 2011

PragmatiX: An Interactive Tool for Visualizing the Creation Process Behind Collaboratively Engineered Ontologies

scientific article (publication date: 2013)

Precision annotation of digital samples in NCBI's gene expression omnibus

scientific article published on 19 September 2017

Predicting outbreak detection in public health surveillance: quantitative analysis to enable evidence-based method selection.

scientific article

Proposed SKOS Extensions for BioPortal Terminology Services

Protege-2000: A Plug-in Architecture to Support Knowledge Acquisition, Knowledge Visualization, and the Semantic Web.

scientific article

Protocol Design Patterns: Domain-oriented Abstractions to Support the Authoring of Computer-executable Clinical Trials

Protégé-2000: an open-source ontology-development and knowledge-acquisition environment.

scientific article

Protégé-OWL: Creating Ontology-Driven Reasoning Applicationswith the Web Ontology Language

scientific article published in January 2005

Protégé: Community is Everything

Protégé: a tool for managing and using terminology in radiology applications

scientific article

Pushing the envelope: challenges in a frame-based representation of human anatomy

RASTA: a distributed temporal abstraction system to facilitate knowledge-driven monitoring of clinical databases

scientific article published on 01 January 2001

RESUME: a temporal-abstraction system for patient monitoring

scientific article published on June 1993

Representation of Nursing Guidelines Using the EON Guideline Model

scientific article published in January 2000

Representation of Structural Relationships in the Foundational Model of Anatomy

scientific article published in January 2001

Representation of change in controlled medical terminologies

scientific article published in January 1999

Representation of clinical data using SNOMED III and conceptual graphs

scientific article published in January 1992

Representation of temporal indeterminacy in clinical databases

scientific article

Representing the Digital Anatomist Foundational Model as a Protege Ontology

scientific article published in January 1999

Representing the NCI Thesaurus in OWL DL: Modeling tools help modeling languages

scientific article published on January 2008

Response of general practitioners to computer-generated critiques of hypertension therapy.

scientific article published in April 1993

Reuse of the EON Architecture to Automate Protocol-Based Care: From AIDS to Breast Cancer

scientific article published in January 1996

SWRL-F

SYNCHRONUS: a reusable software module for temporal integration.

scientific article published in January 2002

Scalable software architectures for decision support.

scientific article published on December 1999

Searching ontologies based on content

Semantic Wiki Search

scientific article

Semantic clinical guideline documents

scientific article

Semantic infrastructure to enable collaboration in ontology development

Semi-automated entry of clinical temporal-abstraction knowledge

scientific article

Sequential versus standard neural networks for pattern recognition: An example using the domain of coronary heart disease

scientific article published on July 1, 1997

Simplified OWL Ontology Editing for the Web: Is WebProtégé Enough?

scientific article published at ISWC 2013

Snap-SPARQL: A Java Framework for Working with SPARQL and OWL

Software-engineering challenges of building and deploying reusable problem solvers

scientific article

Specifying Ontology Views by Traversal

scientific article published in ISWC 2004

Standards-based Sharable Active Guideline Environment (SAGE): A Project to Develop a Universal Framework for Encoding and Disseminating Electronic Clinical Practice Guidelines.

scientific article

Stanford Medical Informatics: uncommon research, common goals.

scientific article published on January 1999

Support for information management in critical care: a new approach to identify needs

scientific article published on January 1995

Supporting Collaborative Ontology Development in Protégé

scientific article published in ISWC 2008

Supporting Rule System Interoperability on the Semantic Web with SWRL

article

Supporting the Collaborative Authoring of ICD-11 with WebProtégé

scientific article (publication date: 13 November 2010)

T-HELPER: automated support for community-based clinical research

scientific article

T-Helper I: An Electronic Medical Record Supporting the Treatment of AIDS.

scientific article published in January 1993

Task modeling with reusable problem-solving methods

Technology for building intelligent systems: from psychology to engineering

scientific article published in January 2007

Temporal-abstraction mechanisms in management of clinical protocols

scientific article

Ten years of Applied Ontology

The Biomedical Resource Ontology (BRO) to enable resource discovery in clinical and translational research

scientific article

The CAIRR Pipeline for Submitting Standards-Compliant B and T Cell Receptor Repertoire Sequencing Studies to the National Center for Biotechnology Information Repositories

article published in 2018

The CEDAR Workbench: An Ontology-Assisted Environment for Authoring Metadata that Describe Scientific Experiments

scientific article published on 04 October 2017

The Chronus II temporal database mediator

scientific article

The EON model of intervention protocols and guidelines

scientific article

The Lexicon Builder Web service: Building Custom Lexicons from two hundred Biomedical Ontologies

scientific article

The National Center for Biomedical Ontology

scientific article

The New HIT: Human Health Information Technology

scientific article published in January 2017

The PROMPT suite: interactive tools for ontology merging and mapping

article

The Protégé OWL Plugin: An Open Development Environment for Semantic Web Applications

article

The Protégé Project: A Look Back and a Look Forward

scientific article published on June 2015

The SAGE Guideline Model: achievements and overview

scientific article

The SAGE guideline modeling: motivation and methodology.

scientific article published on January 2004

The Unified Problem-Solving Method Development Language UPML

article

The center for expanded data annotation and retrieval

scientific article

The development of a controlled medical terminology: identification, collaboration, and customization

scientific article published on 01 January 1995

The evolution of Protégé: an environment for knowledge-based systems development

article

The impact of displayed awards on the credibility and retention of Web site information

scientific article

The knowledge acquisition workshops: A remarkable convergence of ideas

The low availability of metadata elements for evaluating the quality of medical information on the World Wide Web.

scientific article

The ontology life cycle: Integrated tools for editing, publishing, peer review, and evolution of ontologies

scientific article

The open biomedical annotator

scientific article

The road to professionalism in medical informatics: the role of training

scientific article published on 01 June 1996

The separation of reviewing knowledge from medical knowledge.

scientific article published on March 1995

The strained quality of medical data

scientific article

The structure of guideline recommendations: a synthesis

scientific article

The variable quality of metadata about biological samples used in biomedical experiments

article published in 2019

Theater-Style Demonstration: EON: CORBA-Based Middleware for Automation of Protocol-Directed Therapy

scientific article published in January 1997

Therapy planning as constraint satisfaction: a computer-based antiretroviral therapy advisor for the management of HIV

scientific article

There's no theory better than that of a practical tool

Tool support for authoring eligibility criteria for cancer trials

scientific article

Tools to facilitate the interchange and analysis of nontraditional health surveillance data

Toward a Harmonized WHO Family of International Classifications Content Model

scientific article published on 01 June 2020

Toward a science of learning systems: a research agenda for the high-functioning Learning Health System

scientific article

Toward reusable software components at the point of care

scientific article

Tracking Changes During Ontology Evolution

scientific article published in ISWC 2004

Translating research into practice: organizational issues in implementing automated decision support for hypertension in three medical centers

scientific article published on 07 June 2004

Traversing Ontologies to Extract Views

Understanding How Users Edit Ontologies: Comparing Hypotheses About Four Real-World Projects

scientific article published at ISWC 2015

Understanding detection performance in public health surveillance: modeling aberrancy-detection algorithms

scientific article published on 28 August 2008

Unified Medical Language System term occurrences in clinical notes: a large-scale corpus analysis

scientific article

Unleashing the value of Common Data Elements through the CEDAR Workbench

scientific article published on 01 January 2019

Use of KADS to create a conceptual model of the ONCOCIN task

article

Use of OWL and Semantic Web Technologies at Pinterest

scientific article

Use of Protégé-2000 to Encode Clinical Guidelines.

scientific article published in January 2002

Use of a domain model to drive an interactive knowledge-editing tool

article

Use of declarative statements in creating and maintaining computer-interpretable knowledge bases for guideline-based care

scientific article published on January 2006

Use of description logic classification to reason about consequences of penetrating injuries

scientific article

Use of ontology structure and Bayesian models to aid the crowdsourcing of ICD-11 sanctioning rules

scientific article published on 10 February 2017

User Extensible System to Identify Problems in OWL Ontologies and SWRL Rules

Using Ontologies to Drive the Creation of High-Quality Metadata in CEDAR

scientific article published in proceedings of the iswc 2018 posters & demonstrations, industry and blue sky ideas tracks

Using SPARQL to query bioportal ontologies and metadata

conference paper published in 2012

Using Semantic Web in ICD-11: Three Years Down the Road

scientific article published at ISWC 2013

Using aggregate taxonomies to summarize SNOMED CT evolution

Using an ontology of human anatomy to inform reasoning with geometric models.

scientific article published on January 2005

Using association rule mining and ontologies to generate metadata recommendations from multiple biomedical databases

scientific article published on 01 January 2019

Using ethnographic methods to classify the human experience in medicine: a case study of the presence ontology

scientific article

Using ontologies linked with geometric models to reason about penetrating injuries

scientific article published on 30 May 2006

Using ontologies to model human navigation behavior in information networks: A study based on Wikipedia

scientific article

Using semantic dependencies for consistency management of an ontology of brain-cortex anatomy

scientific article published on 24 January 2007

Using semantic technologies to enhance metadata submissions to public repositories in biomedicine.

Using text to build semantic networks for pharmacogenomics

scientific article

Using the wisdom of the crowds to find critical errors in biomedical ontologies: a study of SNOMED CT.

scientific article

Utilizing a structural meta-ontology for family-based quality assurance of the BioPortal ontologies

scientific article published on 14 March 2016

VM-in-Protégé: a study of software reuse.

scientific article

VO: Vaccine Ontology

VO: Vaccine Ontology

VO: Vaccine Ontology

VO: Vaccine Ontology

WebProtégé 3.0 - Collaborative OWL Ontology Engineering in the Cloud

scientific article published in proceedings of the iswc 2018 posters & demonstrations, industry and blue sky ideas tracks

WebProtégé: A Cloud-Based Ontology Editor

scientific article published on 21 February 2019

WebProtégé: A Collaborative Ontology Editor and Knowledge Acquisition Tool for the Web

scientific article published on January 2013

WebProtégé: Supporting the Creation of ICD-11

scientific article published in proceedings of the iswc 2010 posters & demonstrations track: collected abstracts

WebProtégé: a collaborative Web-based platform for editing biomedical ontologies

scientific article published in 2014

What Four Million Mappings Can Tell You about Two Hundred Ontologies

Will Semantic Web Technologies Work for the Development of ICD-11?

article

Wrestling with SUMO and bio-ontologies

scientific article published on January 2006

iTools: a framework for classification, categorization and integration of computational biology resources

scientific article published in 2008