Search filters

List of works by Jean Yang

78Gy with Fiducial Marker Image-Guided Radiotherapy in Prostate Cancer: Single Center Analysis of 301 Patients

scientific article published on 10 November 2016

A 14-Protein Signature for Rapid Identification of Poor Prognosis Stage III Metastatic Melanoma.

scientific article published on 11 December 2017

A benchmark study of simulation methods for single-cell RNA sequencing data

scientific article published on 25 November 2021

A distinctive alveolar macrophage activation state induced by cigarette smoking

scientific article

A field guide to cultivating computational biology

scientific article published on 08 October 2021

A hierarchical approach to removal of unwanted variation for large-scale metabolomics data

scientific article published on 17 August 2021

A multi-array multi-SNP genotyping algorithm for Affymetrix SNP microarrays.

scientific article published on 25 April 2007

A multi-step classifier addressing cohort heterogeneity improves performance of prognostic biomarkers in three cancer types

scientific article

A prediction model for viability at the end of the first trimester after a single early pregnancy evaluation

scientific article published on 01 February 2013

Analysis of Post-Liver Transplant Hepatitis C Virus Recurrence Using Serial Cluster of Differentiation Antibody Microarrays

scientific article published on 20 February 2015

Analysis of a splice array experiment elucidates roles of chromatin elongation factor Spt4-5 in splicing

scientific article

Analysis of gene expression in the developing mouse retina

scholarly article

Analysis of the Whole-Exome Sequencing of Tumor and Circulating Tumor DNA in Metastatic Melanoma

scientific article published on 29 November 2019

Analysis of the prototypical Staphylococcus aureus multiresistance plasmid pSK1.

scientific article published on 12 June 2010

Asthma investigators begin to reap the fruits of genomics

scientific article

Authors' Reply

scientific article published on 09 October 2019

BRAF mutation, NRAS mutation, and the absence of an immune-related expressed gene profile predict poor outcome in patients with stage III melanoma.

scientific article published on 30 August 2012

Challenges for Brain Data Analysis in VR Environments

scientific article published in April 2019

Characterizing mutation-expression network relationships in multiple cancers.

scientific article

Circulating cytokines predict immune-related toxicity in melanoma patients receiving anti-PD-1-based immunotherapy

article

ClassifyR: an R package for performance assessment of classification with applications to transcriptomics.

scientific article published in February 2015

Combining serum microRNA and CA-125 as prognostic indicators of preoperative surgical outcome in women with high-grade serous ovarian cancer.

scientific article

Comparison study of microarray meta-analysis methods.

scientific article

Core functional nodes and sex-specific pathways in human ischaemic and dilated cardiomyopathy

scientific article published on 02 June 2020

Cross-Species PTM Mapping from Phosphoproteomic Data.

scientific article

DCARS: differential correlation across ranked samples

scientific article published on 01 March 2019

Determination of prognosis in metastatic melanoma through integration of clinico-pathologic, mutation, mRNA, microRNA, and protein information.

scientific article published on 24 July 2014

Differential distribution improves gene selection stability and has competitive classification performance for patient survival.

scientific article published on 17 May 2016

Differential gene expression profiling after conditional Müller-cell ablation in a novel transgenic model.

scientific article

Direction pathway analysis of large-scale proteomics data reveals novel features of the insulin action pathway

scientific article

Discriminating lymphomas and reactive lymphadenopathy in lymph node biopsies by gene expression profiling

scientific article

Disease-specific gene expression profiling in multiple models of lung disease

scientific article

Dissecting asthma using focused transgenic modeling and functional genomics

scientific article

Distinct Molecular Profiles and Immunotherapy Treatment Outcomes of V600E and V600K BRAF-Mutant Melanoma

scientific article published on 10 January 2019

Expression profiling of cytogenetically normal acute myeloid leukemia identifies microRNAs that target genes involved in monocytic differentiation.

scientific article

Fluid intake and all-cause mortality, cardiovascular mortality and kidney function: a population-based longitudinal cohort study

scientific article published on 6 January 2014

Freshly isolated rat alveolar type I cells, type II cells, and cultured type II cells have distinct molecular phenotypes

scientific article published on 24 September 2004

Gene expression allelic imbalance in ovine brown adipose tissue impacts energy homeostasis

scientific article

Gene expression profiling reveals renin mRNA overexpression in human hypertensive kidneys and a role for microRNAs.

scientific article

Genes Influencing Circadian Differences in Blood Pressure in Hypertensive Mice ⬇️

scientific article published on April 26, 2011

Genome-wide analysis of primary CD4+ and CD8+ T cell transcriptomes shows evidence for a network of enriched pathways associated with HIV disease ⬇️

scientific article published on March 16, 2011

Genome-wide profiling identifies epithelial cell genes associated with asthma and with treatment response to corticosteroids

scientific article

Health-Related Quality of Life in People Across the Spectrum of CKD

scientific article published on 03 October 2020

Hepatic metallothionein expression in chronic hepatitis C virus infection is IFNL3 genotype-dependent.

scientific article published on 16 January 2014

Hyperactivation of the Insulin Signaling Pathway Improves Intracellular Proteostasis by Coordinately Up-regulating the Proteostatic Machinery in Adipocytes

scientific article published on 13 October 2016

Identification of microRNA-mRNA modules using microarray data.

scientific article

Identification, Review, and Systematic Cross-Validation of microRNA Prognostic Signatures in Metastatic Melanoma

scientific article

Identifying differentially expressed genes from microarray experiments via statistic synthesis.

scientific article

Impaired Akt phosphorylation in insulin-resistant human muscle is accompanied by selective and heterogeneous downstream defects.

scientific article

Improved moderation for gene-wise variance estimation in RNA-Seq via the exploitation of external information.

scientific article

Inferring data-specific micro-RNA function through the joint ranking of micro-RNA and pathways from matched micro-RNA and gene expression data

scientific article

Integrated single cell data analysis reveals cell specific networks and novel coactivation markers

scientific article

Integrative Analysis of Prognostic Biomarkers for Acute Rejection in Kidney Transplant Recipients

scientific article published on 02 November 2020

Investigating higher-order interactions in single-cell data with scHOT

scientific article published on 13 July 2020

LC-N2G: a local consistency approach for nutrigenomics data analysis

scientific article published on 17 November 2020

Measures of association for identifying microRNA-mRNA pairs of biological interest

scientific article

MicroRNA and mRNA expression profiling in metastatic melanoma reveal associations with BRAF mutation and patient prognosis.

scientific article published on 5 January 2015

Molecular interaction networks for the analysis of human disease: utility, limitations, and considerations.

scientific article

Network-based biomarkers enhance classical approaches to prognostic gene expression signatures.

scientific article

Nodal and BMP expression during the transition to pentamery in the sea urchin Heliocidaris erythrogramma: insights into patterning the enigmatic echinoderm body plan.

scientific article

Novel subdomains of the mouse olfactory bulb defined by molecular heterogeneity in the nascent external plexiform and glomerular layers.

scientific article

One-Time Fecal Immunochemical Screening for Advanced Colorectal Neoplasia in Patients with CKD (DETECT Study)

scientific article published on 30 April 2019

PD-L1 Expression and Immune Escape in Melanoma Resistance to MAPK Inhibitors

scientific article

PD-L1 Negative Status is Associated with Lower Mutation Burden, Differential Expression of Immune-Related Genes, and Worse Survival in Stage III Melanoma

scientific article published on 9 March 2016

PD-L1 expression in tonsillar cancer is associated with human papillomavirus positivity and improved survival: implications for anti-PD1 clinical trials.

scientific article published on 20 October 2016

PhosphOrtholog: a web-based tool for cross-species mapping of orthologous protein post-translational modifications

scientific article published on 19 August 2015

Phyllodes tumours of the breast: a clinicopathological analysis of 65 cases from a single institution

scientific article published on 28 March 2009

Proteins from the Wnt pathway are involved in the pathogenesis and progression of mammary phyllodes tumours

scientific article published on 01 November 2009

Quantifying the effect of body mass index, age, and depression severity on 24-h activity patterns in persons with a lifetime history of affective disorders

scientific article

Quantitative Performance Evaluator for Proteomics (QPEP): Web-based Application for Reproducible Evaluation of Proteomics Preprocessing Methods.

scientific article published on 05 June 2017

Reduced p16 and increased cyclin D1 and pRb expression are correlated with progression in cutaneous melanocytic tumors.

scientific article

Review and cross-validation of gene expression signatures and melanoma prognosis.

scientific article published on 29 September 2011

Single-cell RNA-Seq analysis reveals dynamic trajectories during mouse liver development

scientific article published on 4 December 2017

Statistical Issues in cDNA Microarray Data Analysis

scientific article published on January 1, 2003

Strategies to enable large-scale proteomics for reproducible research

scientific article published on 30 July 2020

Survival and quality of life impact of a risk-based allocation algorithm for deceased donor kidney transplantation.

scientific article published on 26 February 2018

Taking Kidneys for Granted? Time to Reflect on the Choices We Make.

scientific article published on 21 June 2017

Targeting activating mutations of EZH2 leads to potent cell growth inhibition in human melanoma by derepression of tumor suppressor genes

scientific article

The Yeast Homolog of Heme Oxygenase-1 Affords Cellular Antioxidant Protection via the Transcriptional Regulation of Known Antioxidant Genes ⬇️

scientific article published on November 16, 2010

The transcriptional response to oxidative stress is part of, but not sufficient for, insulin resistance in adipocytes

scientific article published on 29 January 2018

Transcriptional downregulation of MHC class I and melanoma de- differentiation in resistance to PD-1 inhibition

scientific article published on 20 April 2020

Transcriptional profiles in CD8+ T cells from HIV+ progressors on HAART are characterized by coordinated up-regulation of oxidative phosphorylation enzymes and interferon responses

scientific article published on 09 August 2008

Transcriptome-wide targets of alternative splicing by RBM4 and possible role in cancer.

scientific article

Transcriptomic analysis of Nodal- and BMP-associated genes during juvenile development of the sea urchin Heliocidaris erythrogramma.

scientific article published on 8 June 2015

Tuning of delta-protocadherin adhesion through combinatorial diversity

scientific article published on 14 December 2018

VAN: an R package for identifying biologically perturbed networks via differential variability analysis

scientific article

Whole-genome landscapes of major melanoma subtypes.

scientific article published on 3 May 2017

ZRANB2 localizes to supraspliceosomes and influences the alternative splicing of multiple genes in the transcriptome ⬇️

scientific article published on May 11, 2013

bcGST-an interactive bias-correction method to identify over-represented gene-sets in boutique arrays

scientific article published on 01 April 2019

miR-10a is aberrantly overexpressed in Nucleophosmin1 mutated acute myeloid leukaemia and its suppression induces cell death.

scientific article published on 20 February 2012

scJoint integrates atlas-scale single-cell RNA-seq and ATAC-seq data with transfer learning

scientific article published on 20 January 2022

scMerge leverages factor analysis, stable expression, and pseudoreplication to merge multiple single-cell RNA-seq datasets

scientific article published on 26 April 2019

scREMOTE: Using multimodal single cell data to predict regulatory gene relationships and to build a computational cell reprogramming model

scientific article published on 15 March 2022

Paulina is supported by:

About Paulina

Help