List of works - Stéphanie Manel

A new individual-based spatial approach for identifying genetic discontinuities in natural populations

article

Adaptive Genetic Variation on the Landscape: Methods and Cases

scientific article published in 2012

Additive effects of climate change on connectivity between marine protected areas and larval supply to fished areas

scientific article published in 2014

Alternative methods for predicting species distribution: an illustration with Himalayan river birds

article

An integrated framework to identify wildlife populations under threat from climate change.

scientific article

Applications of landscape genetics in conservation biology: concepts and challenges

article

Applying convolutional neural networks to speed up environmental DNA annotation in a highly diverse ecosystem

scientific article published on 17 June 2022

Assessment of soil fungal diversity in different alpine tundra habitats by means of pyrosequencing

scientific article published in 2011

Assignment methods: matching biological questions with appropriate techniques

scientific article

Broad-scale adaptive genetic variation in alpine plants is driven by temperature and precipitation

scientific article published on 10 June 2012

Brownian models and coalescent structures.

scientific article published in May 2004

Canonical correlations reveal adaptive loci and phenotypic responses to climate in perennial ryegrass

scientific article published on 23 October 2020

Characterizing the phylogenetic tree community structure of a protected tropical rain forest area in Cameroon

scientific article

Climate differently influences the genomic patterns of two sympatric marine fish species

scientific article published in 2021

Combining Genotype, Phenotype, and Environment to Infer Potential Candidate Genes

scientific article published on 20 December 2016

Combining six genome scan methods to detect candidate genes to salinity in the Mediterranean striped red mullet (Mullus surmuletus).

scientific article

Common factors drive adaptive genetic variation at different spatial scales in Arabis alpina

scientific article

Comparing discriminant analysis, neural networks and logistic regression for predicting species distributions: a case study with a Himalayan river bird

article

Comparison of Bayesian clustering and edge detection methods for inferring boundaries in landscape genetics.

scientific article

Considering adaptive genetic variation in climate change vulnerability assessment reduces species range loss projections.

scientific article published on 6 May 2019

Detecting Wildlife Poaching: Identifying the Origin of Individuals with Bayesian Assignment Tests and Multilocus Genotypes

Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations

scientific article published on 7 January 2013

Developing educational resources for population genetics in R: an open and collaborative approach

scientific article

Development of an Arabis alpina genomic contig sequence data set and application to single nucleotide polymorphisms discovery

scientific article

Ecological traits shape genetic diversity patterns across the Mediterranean Sea: a quantitative review on fishes

article

Effects of built landscape on taxonomic homogenization: Two case studies of private gardens in the French Mediterranean

article

Environmental DNA illuminates the dark diversity of sharks.

scientific article published on 2 May 2018

Environmental DNA metabarcoding reveals and unpacks a biodiversity conservation paradox in Mediterranean marine reserves

scientific article published on 28 April 2021

Evaluating presence-absence models in ecology: the need to account for prevalence

article

Evolving spatial conservation prioritization with intraspecific genetic data

scientific article published on 18 April 2022

Fast processing of environmental DNA metabarcoding sequence data using convolutional neural networks

Forecasting changes in population genetic structure of alpine plants in response to global warming

scientific article published on 18 April 2012

Genetic diversity in widespread species is not congruent with species richness in alpine plant communities

scientific article

Genetic introgression of cultured rainbow trout in the Mexican native trout complex

article by Marco A. Escalante et al published 27 March 2014 in Conservation Genetics

Genetic variation of loci potentially under selection confounds species-genetic diversity correlations in a fragmented habitat

scientific article published on 15 November 2016

Genome scan to assess the respective role of host-plant and environmental constraints on the adaptation of a widespread insect

scientific article

Genomic insights into the historical and contemporary demographics of the grey reef shark

scientific article published on 16 March 2022

Genomic resources and their influence on the detection of the signal of positive selection in genome scans

scientific article

Genotype - environment correlations in corals from the Great Barrier Reef

scientific article

Geographic isolation and larval dispersal shape seascape genetic patterns differently according to spatial scale.

scientific article published on 5 June 2018

Global determinants of freshwater and marine fish genetic diversity

scientific article published on 10 February 2020

Global mismatch between fishing dependency and larval supply from marine reserves

scientific article

History or ecology? Substrate type as a major driver of spatial genetic structure in Alpine plants

scientific article

Identifying barriers to gene flow and hierarchical conservation units from seascape genomics: a modelling framework applied to a marine predator

scientific article published in 2022

Identifying genetic signatures of selection in a non-model species, alpine gentian (Gentiana nivalis L.), using a landscape genetic approach

article

Influence of ethnolinguistic diversity on the sorghum genetic patterns in subsistence farming systems in eastern Kenya

scientific article

Insights into the genetic relationships among plants of Beta section Beta using SNP markers

scientific article published on 06 June 2017

Integrating landscape genomics and spatially explicit approaches to detect loci under selection in clinal populations

scientific article

Landscape genetics of plants ⬇️

scientific article published on December 1, 2010

Landscape genetics: combining landscape ecology and population genetics

article

Long-Distance Benefits of Marine Reserves: Myth or Reality?

scientific article published on 15 February 2019

Long-Distance Marine Connectivity: Poorly Understood but Potentially Important

scientific article published on 19 June 2019

Low connectivity between Mediterranean marine protected areas: a biophysical modeling approach for the dusky grouper Epinephelus marginatus

scientific article

McSwan: a joint site frequency spectrum method to detect and date selective sweeps across multiple population genomes

scientific article published on 22 November 2018

Meeting review. Uncovering the genetic basis of adaptive change: on the intersection of landscape genomics and theoretical population genetics

scientific article published in July 2013

MetaPopGen 2.0: A multi-locus genetic simulator to model populations of large size

scientific article published on 08 October 2020

MetaPopGen: an r package to simulate population genetics in large size metapopulations

scientific article published on 13 January 2015

Microsatellite primers in Parietaria judaica (Urticaceae) to assess genetic diversity and structure in urban landscapes

scientific article

Morphological clines and weak drift along an urbanization gradient in the butterfly, Pieris rapae

scientific article

New genomic resources for three exploited Mediterranean fishes

scientific article published on 03 July 2020

Opportunities and challenges of macrogenetic studies

Partitioning genetic and species diversity refines our understanding of species-genetic diversity relationships

scientific article published on 11 December 2018

Persistence of butterfly populations in fragmented habitats along urban density gradients: motility helps

scientific article published on 09 August 2017

Perspectives and challenges in landscape genetics

article

Perspectives on the use of landscape genetics to detect genetic adaptive variation in the field

scientific article

Predicting genotype environmental range from genome-environment associations

scientific article published on 06 June 2018

Preserving genetic connectivity in the European Alps protected area network

Reply to Kershaw and Rosenbaum

scientific article published on 13 January 2014

Revisiting long‐distance dispersal in a coastal marine fish

scientific article published in 2023

Sampling in Landscape Genomics

scientific article published on 01 January 2012

Selection criteria for scoring amplified fragment length polymorphisms (AFLPs) positively affect the reliability of population genetic parameter estimates

scientific article published in April 2010

Smoothing technical and computational obstacles in gene-environment associations

scientific article published on 01 November 2019

Soil environment is a key driver of adaptation in Medicago truncatula: new insights from landscape genomics

scientific article

Spatial graphs highlight how multi‐generational dispersal shapes landscape genetic patterns

scientific article published in 2020

Species ecology explains the spatial components of genetic diversity in tropical reef fishes

scientific article published on 29 September 2021

Taxonomic, spatial and adaptive genetic variation of Beta section Beta

scientific article published on 2 November 2015

Temporal and spatial analyses disclose consequences of habitat fragmentation on the genetic diversity in capercaillie (Tetrao urogallus).

scientific article published on 17 April 2008

Ten years of landscape genetics

scientific article published on 13 June 2013

Testing large-scale hypotheses using surveys: the effects of land use on the habitats, invertebrates and birds of Himalayan rivers

scientific article published in 2000

The dilemma of female mate selection in the brown bear, a species with sexually selected infanticide

scientific article published in February 2006

The effect of climate on masting in the European larch and on its specific seed predators.

scientific article published on 10 December 2008

Towards an integrated ecosystem of R packages for the analysis of population genetic data

scientific article

Tracking genes of ecological relevance using a genome scan in two independent regional population samples of Arabis alpina

scientific article published in July 2010

Two disjunct Pleistocene populations and anisotropic postglacial expansion shaped the current genetic structure of the relict plant Amborella trichopoda

scientific article

Utility of computer simulations in landscape genetics

scientific article published on 07 July 2010

List of works by Stéphanie Manel

A new individual-based spatial approach for identifying genetic discontinuities in natural populations

Adaptive Genetic Variation on the Landscape: Methods and Cases

Additive effects of climate change on connectivity between marine protected areas and larval supply to fished areas

Alternative methods for predicting species distribution: an illustration with Himalayan river birds

An integrated framework to identify wildlife populations under threat from climate change.

Applications of landscape genetics in conservation biology: concepts and challenges

Applying convolutional neural networks to speed up environmental DNA annotation in a highly diverse ecosystem

Assessment of soil fungal diversity in different alpine tundra habitats by means of pyrosequencing

Assignment methods: matching biological questions with appropriate techniques

Broad-scale adaptive genetic variation in alpine plants is driven by temperature and precipitation

Brownian models and coalescent structures.

Canonical correlations reveal adaptive loci and phenotypic responses to climate in perennial ryegrass

Characterizing the phylogenetic tree community structure of a protected tropical rain forest area in Cameroon

Climate differently influences the genomic patterns of two sympatric marine fish species

Combining Genotype, Phenotype, and Environment to Infer Potential Candidate Genes

Combining six genome scan methods to detect candidate genes to salinity in the Mediterranean striped red mullet (Mullus surmuletus).

Common factors drive adaptive genetic variation at different spatial scales in Arabis alpina

Comparing discriminant analysis, neural networks and logistic regression for predicting species distributions: a case study with a Himalayan river bird

Comparison of Bayesian clustering and edge detection methods for inferring boundaries in landscape genetics.

Considering adaptive genetic variation in climate change vulnerability assessment reduces species range loss projections.

Detecting Wildlife Poaching: Identifying the Origin of Individuals with Bayesian Assignment Tests and Multilocus Genotypes

Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations

Developing educational resources for population genetics in R: an open and collaborative approach

Development of an Arabis alpina genomic contig sequence data set and application to single nucleotide polymorphisms discovery

Ecological traits shape genetic diversity patterns across the Mediterranean Sea: a quantitative review on fishes

Effects of built landscape on taxonomic homogenization: Two case studies of private gardens in the French Mediterranean

Environmental DNA illuminates the dark diversity of sharks.

Environmental DNA metabarcoding reveals and unpacks a biodiversity conservation paradox in Mediterranean marine reserves

Evaluating presence-absence models in ecology: the need to account for prevalence

Evolving spatial conservation prioritization with intraspecific genetic data

Fast processing of environmental DNA metabarcoding sequence data using convolutional neural networks

Forecasting changes in population genetic structure of alpine plants in response to global warming

Genetic diversity in widespread species is not congruent with species richness in alpine plant communities

Genetic introgression of cultured rainbow trout in the Mexican native trout complex

Genetic variation of loci potentially under selection confounds species-genetic diversity correlations in a fragmented habitat

Genome scan to assess the respective role of host-plant and environmental constraints on the adaptation of a widespread insect

Genomic insights into the historical and contemporary demographics of the grey reef shark

Genomic resources and their influence on the detection of the signal of positive selection in genome scans

Genotype - environment correlations in corals from the Great Barrier Reef

Geographic isolation and larval dispersal shape seascape genetic patterns differently according to spatial scale.

Global determinants of freshwater and marine fish genetic diversity

Global mismatch between fishing dependency and larval supply from marine reserves

History or ecology? Substrate type as a major driver of spatial genetic structure in Alpine plants

Identifying barriers to gene flow and hierarchical conservation units from seascape genomics: a modelling framework applied to a marine predator

Identifying genetic signatures of selection in a non-model species, alpine gentian (Gentiana nivalis L.), using a landscape genetic approach

Influence of ethnolinguistic diversity on the sorghum genetic patterns in subsistence farming systems in eastern Kenya

Insights into the genetic relationships among plants of Beta section Beta using SNP markers

Integrating landscape genomics and spatially explicit approaches to detect loci under selection in clinal populations

Landscape genetics of plants ⬇️

Landscape genetics: combining landscape ecology and population genetics

Long-Distance Benefits of Marine Reserves: Myth or Reality?

Long-Distance Marine Connectivity: Poorly Understood but Potentially Important

Low connectivity between Mediterranean marine protected areas: a biophysical modeling approach for the dusky grouper Epinephelus marginatus

McSwan: a joint site frequency spectrum method to detect and date selective sweeps across multiple population genomes

Meeting review. Uncovering the genetic basis of adaptive change: on the intersection of landscape genomics and theoretical population genetics

MetaPopGen 2.0: A multi-locus genetic simulator to model populations of large size

MetaPopGen: an r package to simulate population genetics in large size metapopulations

Microsatellite primers in Parietaria judaica (Urticaceae) to assess genetic diversity and structure in urban landscapes

Morphological clines and weak drift along an urbanization gradient in the butterfly, Pieris rapae

New genomic resources for three exploited Mediterranean fishes

Opportunities and challenges of macrogenetic studies

Partitioning genetic and species diversity refines our understanding of species-genetic diversity relationships

Persistence of butterfly populations in fragmented habitats along urban density gradients: motility helps

Perspectives and challenges in landscape genetics

Perspectives on the use of landscape genetics to detect genetic adaptive variation in the field

Predicting genotype environmental range from genome-environment associations

Preserving genetic connectivity in the European Alps protected area network

Reply to Kershaw and Rosenbaum

Revisiting long‐distance dispersal in a coastal marine fish

Sampling in Landscape Genomics

Selection criteria for scoring amplified fragment length polymorphisms (AFLPs) positively affect the reliability of population genetic parameter estimates

Smoothing technical and computational obstacles in gene-environment associations

Soil environment is a key driver of adaptation in Medicago truncatula: new insights from landscape genomics

Spatial graphs highlight how multi‐generational dispersal shapes landscape genetic patterns

Species ecology explains the spatial components of genetic diversity in tropical reef fishes

Taxonomic, spatial and adaptive genetic variation of Beta section Beta

Temporal and spatial analyses disclose consequences of habitat fragmentation on the genetic diversity in capercaillie (Tetrao urogallus).

Ten years of landscape genetics

Testing large-scale hypotheses using surveys: the effects of land use on the habitats, invertebrates and birds of Himalayan rivers