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List of works by Shinji Masuda

A PixD--PapB chimeric protein reveals the function of the BLUF domain C-terminal α-helices for light signal transduction

scientific article published on 30 July 2012

A highly sensitive quantification method for the accumulation of alarmone ppGpp in Arabidopsis thaliana using UPLC-ESI-qMS/MS

scientific article published on 10 March 2015

A new cytochrome subunit bound to the photosynthetic reaction center in the purple bacterium, Rhodovulum sulfidophilum.

scientific article published in April 1999

A new membrane-bound cytochrome c works as an electron donor to the photosynthetic reaction center complex in the purple bacterium, Rhodovulum sulfidophilum

scientific article published on 30 December 2006

A predicted structure for the PixD-PixE complex determined by homology modeling, docking simulations, and a mutagenesis study.

scientific article published on 7 February 2013

Adenylyl cyclase activity of Cya1 from the cyanobacterium Synechocystis sp. strain PCC 6803 is inhibited by bicarbonate.

scientific article published on July 2005

AppA is a blue light photoreceptor that antirepresses photosynthesis gene expression in Rhodobacter sphaeroides

scientific article published in September 2002

Arabidopsis cotyledon-specific chloroplast biogenesis factor CYO1 is a protein disulfide isomerase

scientific article published on 5 October 2007

Arabidopsis mutants affecting oxylipin signaling in photo-oxidative stress responses

scientific article published in December 2013

Basic helix-loop-helix transcription factors JASMONATE-ASSOCIATED MYC2-LIKE1 (JAM1), JAM2, and JAM3 are negative regulators of jasmonate responses in Arabidopsis

scientific article

Biochemical and physiological characterization of a BLUF protein-EAL protein complex involved in blue light-dependent degradation of cyclic diguanylate in the purple bacterium Rhodopseudomonas palustris.

scientific article published on 23 November 2010

Biochemical characterization of the major adenylyl cyclase, Cya1, in the cyanobacterium Synechocystis sp. PCC 6803.

scientific article published in November 2004

Blue light-mediated manipulation of transcription factor activity in vivo

scientific article

Calcium-activated (p)ppGpp synthetase in chloroplasts of land plants.

scientific article published on 15 October 2007

Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.

scientific article published on 6 January 2014

Cross-linking analysis reveals the putative dimer structure of the cyanobacterial BLUF photoreceptor PixD.

scientific article published on 14 May 2015

Crucial role in light signal transduction for the conserved Met93 of the BLUF protein PixD/Slr1694.

scientific article

Crystal structures of the Synechocystis photoreceptor Slr1694 reveal distinct structural states related to signaling

scientific article published on October 2006

Cyanobacterial monogalactosyldiacylglycerol-synthesis pathway is involved in normal unsaturation of galactolipids and low-temperature adaptation of Synechocystis sp. PCC 6803.

scientific article published on 24 December 2013

Cytosolic ppGpp accumulation induces retarded plant growth and development.

scientific article published on 29 January 2016

DAY-LENGTH-DEPENDENT DELAYED-GREENING1, the Arabidopsis Homolog of the Cyanobacterial H+-Extrusion Protein, Is Essential for Chloroplast pH Regulation and Optimization of Non-Photochemical Quenching

scientific article published on 01 December 2019

Elucidation of Genetic Backgrounds Necessary for Chlorophyll a Biosynthesis Toward Artificial Creation of Oxygenic Photosynthesis

scientific article published on 29 May 2015

Evidence that Altered Cis Element Spacing Affects PpsR Mediated Redox Control of Photosynthesis Gene Expression in Rubrivivax gelatinosus

scientific article

FLUCTUATING-LIGHT-ACCLIMATION PROTEIN1, Conserved in Oxygenic Phototrophs, Regulates H+ Homeostasis and Non-Photochemical Quenching in Chloroplasts.

scientific article published in September 2017

Genetic characterization of a flap1 null mutation in Arabidopsis npq4 and pgr5 plants suggests that the regulatory role of FLAP1 involves the control of proton homeostasis in chloroplasts

article

Impact of the plastidial stringent response in plant growth and stress responses.

scientific article

In vitro and in vivo electron transfer to the triheme cytochrome subunit bound to the photosynthetic reaction center complex in the purple bacterium Rhodovulum sulfidophilum

scientific article published on 01 July 2001

Inhibition of arabidopsis hypocotyl elongation by jasmonates is enhanced under red light in phytochrome B dependent manner

scientific article published on 25 July 2012

Involvement of auxin signaling mediated by IAA14 and ARF7/19 in membrane lipid remodeling during phosphate starvation

scientific article published on 31 December 2009

Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation

scientific article

Light-induced chromophore and protein responses and mechanical signal transduction of BLUF proteins

scientific article published on 12 December 2017

Light-induced structural changes in a putative blue-light receptor with a novel FAD binding fold sensor of blue-light using FAD (BLUF); Slr1694 of synechocystis sp. PCC6803.

scientific article

Light-induced structural changes in the active site of the BLUF domain in AppA by Raman spectroscopy

scientific article published in June 2005

Mechanisms of induction of the stress-responsive transcription factors HsfA2 and DREB2A by 12-oxo-phytodienoic acid in Arabidopsis thaliana

scientific article published on 29 April 2014

Mutational Analyses of the Photosynthetic Reaction Center-Bound Triheme Cytochrome Subunit and Cytochromec2in the Purple BacteriumRhodovulum sulfidophilum†

scientific article published on 01 September 2002

N-terminal truncation does not affect the location of a conserved tryptophan in the BLUF domain of AppA from Rhodobacter sphaeroides

scientific article published on 12 July 2012

Null mutation of HvrA compensates for loss of an essential relA/spoT-like gene in Rhodobacter capsulatus.

scientific article published on January 2004

Orientation of a key glutamine residue in the BLUF domain from AppA revealed by mutagenesis, spectroscopy, and quantum chemical calculations

scientific article published in May 2006

PICCORO: A technique for manipulating the activity of transcription factors with blue light

scientific article published on 7 April 2016

Persulphide-responsive transcriptional regulation and metabolism in bacteria

scientific article published on 01 February 2020

Phylogenetic Distribution of Unusual Triheme to Tetraheme Cytochrome Subunit in the Reaction Center Complex of Purple Photosynthetic Bacteria

scientific article published on 01 January 2004

Phylogeny of galactolipid synthase homologs together with their enzymatic analyses revealed a possible origin and divergence time for photosynthetic membrane biogenesis.

scientific article published on 30 December 2011

Plastidial (p)ppGpp Synthesis by the Ca2+-Dependent RelA-SpoT Homolog Regulates the Adaptation of Chloroplast Gene Expression to Darkness in Arabidopsis

scientific article published on 22 October 2020

Prediction of respective contribution of linear electron flow and PGR5-dependent cyclic electron flow to non-photochemical quenching induction

scientific article

Purification and reconstitution of PYP-phytochrome with biliverdin and 4-hydroxycinnamic acid

scientific article published on January 2007

Redox and light regulation of gene expression in photosynthetic prokaryotes

scientific article

Relative contributions of PGR5- and NDH-dependent photosystem I cyclic electron flow in the generation of a proton gradient in Arabidopsis chloroplasts.

scientific article published on 21 August 2017

Repression of photosynthesis gene expression by formation of a disulfide bond in CrtJ.

scientific article

Repressor activity of SqrR, a master regulator of persulfide-responsive genes, is regulated by heme coordination

scientific article published on 10 November 2020

Role of trehalose synthesis pathways in salt tolerance mechanism of Rhodobacter sphaeroides f. sp. denitrificans IL106.

scientific article published in October 2005

Signaling-State Formation Mechanism of a BLUF Protein PapB from the Purple Bacterium Rhodopseudomonas palustris Studied by Femtosecond Time-Resolved Absorption Spectroscopy

scientific article published on 10 December 2014

Significance of PGR5-dependent cyclic electron flow for optimizing the rate of ATP synthesis and consumption in Arabidopsis chloroplasts

scientific article published on 18 June 2018

Significance of accumulation of the alarmone (p)ppGpp in chloroplasts for controlling photosynthesis and metabolite balance during nitrogen starvation in Arabidopsis.

scientific article

Spectroscopic and mutational analysis of the blue-light photoreceptor AppA: a novel photocycle involving flavin stacking with an aromatic amino acid

scientific article

Structural intermediate in the photocycle of a BLUF (sensor of blue light using FAD) protein Slr1694 in a Cyanobacterium Synechocystis sp. PCC6803.

scientific article published in November 2004

Structural refinement of a key tryptophan residue in the BLUF photoreceptor AppA by ultraviolet resonance Raman spectroscopy.

scientific article

Sulfide-responsive transcriptional repressor SqrR functions as a master regulator of sulfide-dependent photosynthesis

scientific article published on 14 February 2017

Temperature-sensitive reaction of a photosensor protein YcgF: possibility of a role of temperature sensor

scientific article published in March 2010

The (PATAN)-CheY-Like Response Regulator PixE Interacts with the Motor ATPase PilB1 to Control Negative Phototaxis in the Cyanobacterium Synechocystis sp. PCC 6803

scientific article published on 01 February 2020

The critical role of a hydrogen bond between Gln63 and Trp104 in the blue-light sensing BLUF domain that controls AppA activity

scientific article published on 6 March 2007

The jasmonate-responsive GTR1 transporter is required for gibberellin-mediated stamen development in Arabidopsis

scientific article

The significance of type II and PrxQ peroxiredoxins for antioxidative stress response in the purple bacterium Rhodobacter sphaeroides

scientific article published on 20 July 2007

Transient dimerization and conformational change of a BLUF protein: YcgF.

scientific article

Tryptophan at position 104 is involved in transforming light signal into changes of beta-sheet structure for the signaling state in the BLUF domain of AppA.

scientific article

ppGpp functions as an alarmone in metazoa

scientific article published on 13 November 2020

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