List of works - Mohd Firdaus Raih

An analysis of simple computational strategies to facilitate the design of functional molecular information processors

scientific article (publication date: 28 October 2016)

COGNAC: a web server for searching and annotating hydrogen-bonded base interactions in RNA three-dimensional structures

scientific article

Characterization of Burkholderia pseudomallei protein BPSL1375 validates the Putative hemolytic activity of the COG3176 N-Acyltransferase family

scientific article published on 23 November 2015

Comparative Genome Sequence Analysis Reveals the Extent of Diversity and Conservation for Glycan-Associated Proteins in Burkholderia spp.

scientific article

Comparative analysis of nucleus-encoded plastid-targeting proteins in Rafflesia cantleyi against photosynthetic and non-photosynthetic representatives reveals orthologous systems with potentially divergent functions

scientific article published in Scientific Reports

Comparative sequence and structure analysis reveals the conservation and diversity of nucleotide positions and their associated tertiary interactions in the riboswitches

scientific article

Computational discovery and annotation of conserved small open reading frames in fungal genomes

scientific article published on 04 February 2019

DNA tetrominoes: the construction of DNA nanostructures using self-organised heterogeneous deoxyribonucleic acids shapes.

scientific article published on 10 August 2015

Drug ReposER: a web server for predicting similar amino acid arrangements to known drug binding interfaces for potential drug repositioning

scientific article published on 01 July 2019

Evidence-based gene models for structural and functional annotations of the oil palm genome.

scientific article published on 8 September 2017

IMAAAGINE: a webserver for searching hypothetical 3D amino acid side chain arrangements in the Protein Data Bank

scientific article

Identification of sRNA mediated responses to nutrient depletion in Burkholderia pseudomallei

scientific article

InterRNA: a database of base interactions in RNA structures.

scientific article published on 8 November 2015

NASSAM: a server to search for and annotate tertiary interactions and motifs in three-dimensional structures of complex RNA molecules ⬇️

scientific article

Nematode Peptides with Host-Directed Anti-inflammatory Activity Rescue Caenorhabditis elegans from a Burkholderia pseudomallei Infection

scientific article published on 12 September 2016

Novel base triples in RNA structures revealed by graph theoretical searching methods

scientific article

Perigone Lobe Transcriptome Analysis Provides Insights into Rafflesia cantleyi Flower Development

scientific article (publication date: 2016)

ProLysED: an integrated database and meta-server of bacterial protease systems

scientific article published in January 2005

Proteins of unknown function in the Protein Data Bank (PDB): an inventory of true uncharacterized proteins and computational tools for their analysis

scientific article

Reconstructing gene regulatory networks from knock-out data using Gaussian Noise Model and Pearson Correlation Coefficient.

scientific article

SPRITE and ASSAM: web servers for side chain 3D-motif searching in protein structures

scientific article

Self-assembly programming of DNA polyominoes

scientific article published on 26 August 2016

Seqping: gene prediction pipeline for plant genomes using self-training gene models and transcriptomic data

scientific article

Solvent accessibility in native and isolated domain environments: general features and implications to interface predictability

The Glaciozyma antarctica genome reveals an array of systems that provide sustained responses towards temperature variations in a persistently cold habitat.

scientific article published on 31 January 2018

The genome of the Tiger Milk mushroom, Lignosus rhinocerotis, provides insights into the genetic basis of its medicinal properties

scientific article

Unravelling the adaptation strategies employed by Glaciozyma antarctica PI12 on Antarctic sea ice

scientific article published on 21 March 2018

List of works by Mohd Firdaus Raih

An analysis of simple computational strategies to facilitate the design of functional molecular information processors

COGNAC: a web server for searching and annotating hydrogen-bonded base interactions in RNA three-dimensional structures

Characterization of Burkholderia pseudomallei protein BPSL1375 validates the Putative hemolytic activity of the COG3176 N-Acyltransferase family

Comparative Genome Sequence Analysis Reveals the Extent of Diversity and Conservation for Glycan-Associated Proteins in Burkholderia spp.

Comparative analysis of nucleus-encoded plastid-targeting proteins in Rafflesia cantleyi against photosynthetic and non-photosynthetic representatives reveals orthologous systems with potentially divergent functions

Comparative sequence and structure analysis reveals the conservation and diversity of nucleotide positions and their associated tertiary interactions in the riboswitches

Computational discovery and annotation of conserved small open reading frames in fungal genomes

DNA tetrominoes: the construction of DNA nanostructures using self-organised heterogeneous deoxyribonucleic acids shapes.

Drug ReposER: a web server for predicting similar amino acid arrangements to known drug binding interfaces for potential drug repositioning

Evidence-based gene models for structural and functional annotations of the oil palm genome.

IMAAAGINE: a webserver for searching hypothetical 3D amino acid side chain arrangements in the Protein Data Bank

Identification of sRNA mediated responses to nutrient depletion in Burkholderia pseudomallei

InterRNA: a database of base interactions in RNA structures.

NASSAM: a server to search for and annotate tertiary interactions and motifs in three-dimensional structures of complex RNA molecules ⬇️

Nematode Peptides with Host-Directed Anti-inflammatory Activity Rescue Caenorhabditis elegans from a Burkholderia pseudomallei Infection

Novel base triples in RNA structures revealed by graph theoretical searching methods

Perigone Lobe Transcriptome Analysis Provides Insights into Rafflesia cantleyi Flower Development

ProLysED: an integrated database and meta-server of bacterial protease systems

Proteins of unknown function in the Protein Data Bank (PDB): an inventory of true uncharacterized proteins and computational tools for their analysis

Reconstructing gene regulatory networks from knock-out data using Gaussian Noise Model and Pearson Correlation Coefficient.

SPRITE and ASSAM: web servers for side chain 3D-motif searching in protein structures

Self-assembly programming of DNA polyominoes

Seqping: gene prediction pipeline for plant genomes using self-training gene models and transcriptomic data

Solvent accessibility in native and isolated domain environments: general features and implications to interface predictability

The Glaciozyma antarctica genome reveals an array of systems that provide sustained responses towards temperature variations in a persistently cold habitat.

The genome of the Tiger Milk mushroom, Lignosus rhinocerotis, provides insights into the genetic basis of its medicinal properties

Unravelling the adaptation strategies employed by Glaciozyma antarctica PI12 on Antarctic sea ice