List of works by Chris Jacobsen

3D X-Ray Imaging of Continuous Objects beyond the Depth of Focus Limit

scientific article published on 01 September 2018

A New Workflow for x-ray fluorescence tomography: MAPSToTomoPy

scientific article (publication date: 9 August 2015)

A characterisation of dark-field imaging of colloidal gold labels in a scanning transmission X-ray microscope.

scientific article published on February 1996

A method for phase reconstruction from measurements obtained using a configured detector with a scanning transmission X-ray microscope

scientific article

A specimen chamber for soft X-ray spectromicroscopy on aqueous and liquid samples

scientific article published on 01 March 2000

A three-dimensional thalamocortical dataset for characterizing brain heterogeneity

scientific article published on 20 October 2020

Achromatic Fresnel optics for wideband extreme-ultraviolet and X-ray imaging.

scientific article

Advantages of soft X-ray absorption over TEM-EELS for solid carbon studies––a comparative study on diesel soot with EELS and NEXAFS

Alignment of low-dose X-ray fluorescence tomography images using differential phase contrast

scientific article published on 12 December 2013

An assessment of the resolution limitation due to radiation-damage in x-ray diffraction microscopy

scientific article

Biological imaging by soft x-ray diffraction microscopy

scientific article

Biological microscopy and soft X-ray optics at Stony Brook

scientific article published in May 1996

Calibration of High-Resolution X-Ray Tomography With Atomic Force Microscopy

scientific article

Carbon K-edge spectra of carbonate minerals.

scientific article published on 8 July 2010

Chemical Heterogeneity of Organic Soil Colloids Investigated by Scanning Transmission X-ray Microscopy and C-1s NEXAFS Microspectroscopy

article

Cluster analysis of soft X-ray spectromicroscopy data.

scientific article

Comet 81P/Wild 2 under a microscope

scientific article

Continuous motion scan ptychography: characterization for increased speed in coherent x-ray imaging.

scientific article

Correlative 3D x-ray fluorescence and ptychographic tomography of frozen-hydrated green algae

scientific article published on 02 November 2018

Data preparation and evaluation techniques for x-ray diffraction microscopy.

scientific article

Differential phase contrast with a segmented detector in a scanning X-ray microprobe.

scientific article

Diffraction-limited imaging in a scanning transmission x-ray microscope

scientific article published in November 1991

Elemental analysis using differential absorption techniques

scientific article

Epidermal growth factor receptor targeted nuclear delivery and high-resolution whole cell X-ray imaging of Fe3O4@TiO2 nanoparticles in cancer cells.

scientific article

Evolution of xylem lignification and hydrogel transport regulation

scientific article (publication date: 14 December 2004)

Fast digital lossy compression for X-ray ptychographic data

scientific article published on 01 January 2021

High-Resolution Imaging by Fourier Transform X-ray Holography.

scientific article

High-resolution ab initio three-dimensional x-ray diffraction microscopy

scientific article

High-resolution x-ray diffraction microscopy of specifically labeled yeast cells

scientific article

Illumination for coherent soft X-ray applications: the new X1A beamline at the NSLS

scientific article published on 01 November 2000

Incorrect support and missing center tolerances of phasing algorithms.

scientific article

Intracellular in situ labeling of TiO2 nanoparticles for fluorescence microscopy detection.

scientific article published on 19 July 2017

Joint reconstruction of x-ray fluorescence and transmission tomography.

scientific article published on June 2017

MANTiS: a program for the analysis of X-ray spectromicroscopy data

scientific article

Micro- and nano-environments of C sequestration in soil: a multi-elemental STXM-NEXAFS assessment of black C and organomineral associations

scientific article published on 28 September 2012

Micro- and nano-environments of carbon sequestration: Multi-element STXM–NEXAFS spectromicroscopy assessment of microbial carbon and mineral associations

scholarly article

Micro-XANES: Chemical contrast in the scanning transmission X-ray microscope

scientific article published in August 1994

Microanalysis with a soft X ray scanning microprobe

More are better, but the details matter: combinations of multiple Fresnel zone plates for improved resolution and efficiency in X-ray microscopy

scientific article published on 17 June 2018

Multislice does it all-calculating the performance of nanofocusing X-ray optics.

scientific article published in February 2017

Nanoscale x-ray imaging of circuit features without wafer etching

scientific article

Near, far, wherever you are: simulations on the dose efficiency of holographic and ptychographic coherent imaging

scientific article published on 27 May 2020

Near-edge X-ray absorption fine structure (NEXAFS) spectroscopy for mapping nano-scale distribution of organic carbon forms in soil: Application to black carbon particles

article

New results in soft X-ray microscopy

scientific article published in April 1994

Non-negative matrix analysis for effective feature extraction in X-ray spectromicroscopy

scientific article

Opportunities and limitations for combined fly-scan ptychography and fluorescence microscopy

scientific article published on August 2015

Optimizing detector geometry for trace element mapping by X-ray fluorescence

scientific article published on January 2015

Organics Captured from Comet 81P/Wild 2 by the Stardust Spacecraft

scientific article published in Science

Parallel ptychographic reconstruction

scientific article

Preserving elemental content in adherent mammalian cells for analysis by synchrotron-based x-ray fluorescence microscopy

scientific article (publication date: 2017)

Quantifying Mesoscale Neuroanatomy Using X-Ray Microtomography

scientific article published in September 2017

Quantifying trace elements in individual aquatic protist cells with a synchrotron X-ray fluorescence microprobe

scientific article published in August 2003

Quantitative 3D elemental microtomography of Cyclotella meneghiniana at 400-nm resolution

scientific article

Quantitative amplitude and phase contrast imaging in a scanning transmission X-ray microscope.

scientific article

Rapid alignment of nanotomography data using joint iterative reconstruction and reprojection.

scientific article published on 18 September 2017

Rapid and accurate analysis of an X-ray fluorescence microscopy data set through gaussian mixture-based soft clustering methods

scientific article

Rapid calculation of paraxial wave propagation for cylindrically symmetric optics

scientific article

Reconstruction of a yeast cell from X-ray diffraction data.

scientific article published on 21 June 2006

Relative merits and limiting factors for x-ray and electron microscopy of thick, hydrated organic materials

scientific article published on 7 October 2017

Relaxation of the Crowther criterion in multislice tomography

scientific article published on 01 October 2018

Scanning transmission X-ray microscopic analysis of purified melanosomes of the mouse iris

article

Scientific data exchange: a schema for HDF5-based storage of raw and analyzed data

scientific article (publication date: 4 October 2014)

Signal-to-noise and radiation exposure considerations in conventional and diffraction x-ray microscopy

scientific article published in August 2009

Simultaneous cryo X-ray ptychographic and fluorescence microscopy of green algae.

scientific article

Single-element elliptical hard x-ray micro-optics

scientific article published on 01 April 2003

Soft X-ray diffraction microscopy of a frozen hydrated yeast cell

scientific article published on 5 November 2009

Soft X-ray radiation-damage studies in PMMA using a cryo-STXM

scientific article published on 25 April 2003

Soft x‐ray microscopy with coherent x rays (invited)

scientific article published in January 1992

Sub-100-nm 3D-elemental mapping of frozen-hydrated cells using the bionanoprobe

The Bionanoprobe: hard X-ray fluorescence nanoprobe with cryogenic capabilities.

scientific article

The history and future of X-ray microscopy

Three dimensions, two microscopes, one code: Automatic differentiation for x-ray nanotomography beyond the depth of focus limit ⬇️

scientific article published on 27 March 2020

TomoPy: a framework for the analysis of synchrotron tomographic data

scientific article (publication date: August 2014)

Tomosaic: efficient acquisition and reconstruction of teravoxel tomography data using limited-size synchrotron X-ray beams

article

Tunable hard x-ray nanofocusing with Fresnel zone plates fabricated using deep etching

scientific article published on 01 May 2020

Ultraviolet germicidal irradiation and its effects on elemental distributions in mouse embryonic fibroblast cells in x-ray fluorescence microanalysis

scientific article

Unsupervised cell identification on multidimensional X-ray fluorescence datasets

scientific article published on 15 March 2014

Using automatic differentiation as a general framework for ptychographic reconstruction

scientific article published on 01 June 2019

X-ray microscopy with synchrotron radiation

scientific article published on 01 August 1998

X-ray nanoprobes and diffraction-limited storage rings: opportunities and challenges of fluorescence tomography of biological specimens.

scientific article

X-ray ptychographic and fluorescence microscopy of frozen-hydrated cells using continuous scanning

scientific article

X-ray scattering and spectroscopy studies on diesel soot from oxygenated fuel under various engine load conditions

scholarly article in Carbon, vol. 43 no. 12, October 2005

X-ray tomography of extended objects: a comparison of data acquisition approaches

scientific article published on 01 November 2018

Zernike phase contrast in scanning microscopy with X-rays.

scientific article

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