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List of works by Ala Trusina

A minimal model for multiple epidemics and immunity spreading

scientific article

A simple model for self-organization of bipartite networks

scientific article published in August 2004

Aging mechanism as the “down side” of adaptation: A network approach

scientific article published in January 2008

Analyzing inflammatory response as excitable media

scientific article published on 18 November 2011

Asymmetric Damage Segregation Constitutes an Emergent Population-Level Stress Response

scientific article published on 13 July 2016

Chaperone-mediated reflux of secretory proteins to the cytosol during endoplasmic reticulum stress

scientific article published on 17 May 2019

Circuit architecture explains functional similarity of bacterial heat shock responses ⬇️

scientific article published on October 31, 2012

Communication Boundaries in Networks

scientific article published in Physical Review Letters

Conditional cooperativity in toxin-antitoxin regulation prevents random toxin activation and promotes fast translational recovery

scientific article

Defining network topologies that can achieve biochemical adaptation.

scientific article

Degree landscapes in scale-free networks

scientific article published on 26 September 2006

Dynamic instabilities induced by asymmetric influence: prisoners' dilemma game in small-world networks.

scientific article published on 26 August 2002

Dynamics of the DNA repair proteins WRN and BLM in the nucleoplasm and nucleoli

scientific article (publication date: November 2014)

Ecosystems with Mutually Exclusive Interactions Self-Organize to a State of High Diversity ⬇️

scientific article published on October 25, 2011

Establishment of heterochromatin in domain-size-dependent bursts

scientific article published on 7 April 2021

Evolution of a G protein-coupled receptor response by mutations in regulatory network interactions

scientific article published on 04 August 2016

Four simple rules that are sufficient to generate the mammalian blastocyst

scientific article

Fragile DNA repair mechanism reduces ageing in multicellular model

scientific article

Functional alignment of regulatory networks: a study of temperate phages

scientific article

Hide-and-seek on complex networks

Hierarchy measures in complex networks

scientific article published on 29 April 2004

ICM cells can be partitioned robustly through transient synchronization using secreted FGF4

scientific article

IRE1α induces thioredoxin-interacting protein to activate the NLRP3 inflammasome and promote programmed cell death under irremediable ER stress.

scientific article

Impact of Zygosity on Bimodal Phenotype Distributions.

scientific article published on July 2017

Model to Link Cell Shape and Polarity with Organogenesis

scientific article published on 11 January 2020

Model to link cell shape and polarity with organogenesis

scientific article published on 11 July 2019

Modeling oscillatory control in NF-κB, p53 and Wnt signaling.

scientific article published on 09 October 2010

Modeling the NF-κB mediated inflammatory response predicts cytokine waves in tissue

scientific article

Nested feedback loops in gene regulation

scientific article published in January 2012

Networks and Cities: An Information Perspective

scientific article published in Physical Review Letters

Noisy transcription factor NF-κB oscillations stabilize and sensitize cytokine signaling in space

scientific article published on 5 February 2013

Nucleation and spreading of a heterochromatic domain in fission yeast.

scientific article

Prisoners' dilemma in real-world acquaintance networks: spikes and quasiequilibria induced by the interplay between structure and dynamics.

scientific article published on 22 September 2003

Rationalizing translation attenuation in the network architecture of the unfolded protein response.

scholarly article

Real-time redox measurements during endoplasmic reticulum stress reveal interlinked protein folding functions

scientific article

Self organized scale-free networks from merging and regeneration

scientific article published in February 2005

Self-assembly, buckling and density-invariant growth of three-dimensional vascular networks

scientific article published on 23 October 2019

Self-organization of structures and networks from merging and small-scale fluctuations

Stochastic priming and spatial cues orchestrate heterogeneous clonal contribution to mouse pancreas organogenesis

scientific article published on 19 September 2017

Stress induced telomere shortening: longer life with less mutations?

scientific article published on March 2014

Targeted Bacterial Immunity Buffers Phage Diversity ⬇️

scientific article published on August 3, 2011

The fitness cost and benefit of phase-separated protein deposits

scientific article published on 08 April 2019

The unfolded protein response and translation attenuation: a modelling approach

scientific article published on October 2010

Theoretical tool bridging cell polarities with development of robust morphologies

article

Translation Attenuation Mechanism in Unfolded Protein Response

Two portable recombination enhancers direct donor choice in fission yeast heterochromatin

scientific article

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