List of works - Francesca Finotello

Analysis of High-Throughput RNA Bisulfite Sequencing Data

scientific article

CD39 identifies the CD4+ tumor-specific T cell population in human cancer

scientific article published on 05 August 2020

Comparative analysis of algorithms for whole-genome assembly of pyrosequencing data

scientific article

Comprehensive evaluation of computational cell-type quantification methods for immuno-oncology

Comprehensive evaluation of transcriptome-based cell-type quantification methods for immuno-oncology

scientific article published on 01 July 2019

Computational genomics tools for dissecting tumour-immune cell interactions

scientific article

Correction to: Molecular and pharmacological modulators of the tumor immune contexture revealed by deconvolution of RNA-seq data

scientific article published on 29 July 2019

Deviations of the immune cell landscape between healthy liver and hepatocellular carcinoma

scientific article published on 18 April 2018

Draft genome sequences of two Neisseria meningitidis serogroup C clinical isolates

scientific article published on 30 July 2010

EEG signal features extraction based on fractal dimension

scientific article published on August 2015

FunPat: function-based pattern analysis on RNA-seq time series data

scientific article

Genomic comparative analysis and gene function prediction in infectious diseases: application to the investigation of a meningitis outbreak

scientific article

Global genomic and transcriptomic analysis of human pancreatic islets reveals novel genes influencing glucose metabolism

scientific article

Guadecitabine Plus Ipilimumab in Unresectable Melanoma: The NIBIT-M4 Clinical Trial

scientific article published on 17 September 2019

Hypoglycemia-induced EEG complexity changes in Type 1 diabetes assessed by fractal analysis algorithm

scholarly article by Fabio Scarpa et al published September 2017 in Biomedical Signal Processing and Control

Inferring causal molecular networks: empirical assessment through a community-based effort

scientific article

Measuring differential gene expression with RNA-seq: challenges and strategies for data analysis

scientific article

Measuring the diversity of the human microbiota with targeted next-generation sequencing

scientific article published on 26 December 2016

Mitochondrial DNA drives abscopal responses to radiation that are inhibited by autophagy

scientific article published on 03 August 2020

Molecular and pharmacological modulators of the tumor immune contexture revealed by deconvolution of RNA-seq data

scientific article published on 24 May 2019

Multi-Omics Profiling of the Tumor Microenvironment: Paving the Way to Precision Immuno-Oncology

NeoFuse: predicting fusion neoantigens from RNA sequencing data

scientific article published on 01 April 2020

Neoantigens Generated by Individual Mutations and Their Role in Cancer Immunity and Immunotherapy

scientific article published on 28 November 2017

New strategies for cancer immunotherapy: targeting regulatory T cells

scientific article published on 27 January 2017

Next-generation computational tools for interrogating cancer immunity

scientific article published on 12 September 2019

Optimizing PCR primers targeting the bacterial 16S ribosomal RNA gene

article

Pan-cancer Immunogenomic Analyses Reveal Genotype-Immunophenotype Relationships and Predictors of Response to Checkpoint Blockade.

scientific article published in January 2017

Quantifying tumor-infiltrating immune cells from transcriptomics data

scientific article published on 14 March 2018

Reducing bias in RNA sequencing data: a novel approach to compute counts

scientific article

Scirpy: A Scanpy extension for analyzing single-cell T-cell receptor sequencing data

scientific article published on 14 April 2020

Scirpy: A Scanpy extension for analyzing single-cell T-cell receptor sequencing data

scientific article published on 02 July 2020

TIminer: NGS data mining pipeline for cancer immunology and immunotherapy

scientific article

Targeting immune checkpoints potentiates immunoediting and changes the dynamics of tumor evolution.

scientific article published on 2 January 2018

List of works by Francesca Finotello

Analysis of High-Throughput RNA Bisulfite Sequencing Data

CD39 identifies the CD4+ tumor-specific T cell population in human cancer

Comparative analysis of algorithms for whole-genome assembly of pyrosequencing data

Comprehensive evaluation of computational cell-type quantification methods for immuno-oncology

Comprehensive evaluation of transcriptome-based cell-type quantification methods for immuno-oncology

Computational genomics tools for dissecting tumour-immune cell interactions

Correction to: Molecular and pharmacological modulators of the tumor immune contexture revealed by deconvolution of RNA-seq data

Deviations of the immune cell landscape between healthy liver and hepatocellular carcinoma

Draft genome sequences of two Neisseria meningitidis serogroup C clinical isolates

EEG signal features extraction based on fractal dimension

FunPat: function-based pattern analysis on RNA-seq time series data

Genomic comparative analysis and gene function prediction in infectious diseases: application to the investigation of a meningitis outbreak

Global genomic and transcriptomic analysis of human pancreatic islets reveals novel genes influencing glucose metabolism

Guadecitabine Plus Ipilimumab in Unresectable Melanoma: The NIBIT-M4 Clinical Trial

Hypoglycemia-induced EEG complexity changes in Type 1 diabetes assessed by fractal analysis algorithm

Inferring causal molecular networks: empirical assessment through a community-based effort

Measuring differential gene expression with RNA-seq: challenges and strategies for data analysis

Measuring the diversity of the human microbiota with targeted next-generation sequencing

Mitochondrial DNA drives abscopal responses to radiation that are inhibited by autophagy

Molecular and pharmacological modulators of the tumor immune contexture revealed by deconvolution of RNA-seq data

Multi-Omics Profiling of the Tumor Microenvironment: Paving the Way to Precision Immuno-Oncology

NeoFuse: predicting fusion neoantigens from RNA sequencing data

Neoantigens Generated by Individual Mutations and Their Role in Cancer Immunity and Immunotherapy

New strategies for cancer immunotherapy: targeting regulatory T cells

Next-generation computational tools for interrogating cancer immunity

Optimizing PCR primers targeting the bacterial 16S ribosomal RNA gene

Pan-cancer Immunogenomic Analyses Reveal Genotype-Immunophenotype Relationships and Predictors of Response to Checkpoint Blockade.

Quantifying tumor-infiltrating immune cells from transcriptomics data

Reducing bias in RNA sequencing data: a novel approach to compute counts

Scirpy: A Scanpy extension for analyzing single-cell T-cell receptor sequencing data

Scirpy: A Scanpy extension for analyzing single-cell T-cell receptor sequencing data

TIminer: NGS data mining pipeline for cancer immunology and immunotherapy

Targeting immune checkpoints potentiates immunoediting and changes the dynamics of tumor evolution.