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List of works by Emre Guney

A diseasome cluster-based drug repurposing of soluble guanylate cyclase activators from smooth muscle relaxation to direct neuroprotection

scientific article published on 5 February 2018

A systems biology approach to cGMP suggests a prominent role for sGC in stroke: Validation by mechanism-based activation of apo-sGC in non-steal dosing coveys neuroprotection and increased survival

scientific article

A transcriptome-proteome integrated network identifies endoplasmic reticulum thiol oxidoreductase (ERp57) as a hub that mediates bone metastasis

scientific article

Analysis of the robustness of network-based disease-gene prioritization methods reveals redundancy in the human interactome and functional diversity of disease-genes

scientific article

Architectures and functional coverage of protein-protein interfaces

scientific article published on 06 May 2008

Biana: a software framework for compiling biological interactions and analyzing networks

scientific article

Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis

scientific article published on 23 August 2016

Erratum: Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis

scientific article published on 10 October 2016

Exploiting Protein-Protein Interaction Networks for Genome-Wide Disease-Gene Prioritization ⬇️

scientific article published on September 21, 2012

Extending Signaling Pathways with Protein–Interaction Networks. Application to Apoptosis

scientific article published on 02 March 2012

FN14 and GRP94 expression are prognostic/predictive biomarkers of brain metastasis outcome that open up new therapeutic strategies

scientific article published on 19 October 2015

From single drug targets to synergistic network pharmacology in ischemic stroke

scientific article published on 20 March 2019

GUILDify: a web server for phenotypic characterization of genes through biological data integration and network-based prioritization algorithms

scientific article

Genetic and functional characterization of disease associations explains comorbidity

scientific article published on 24 July 2017

HotSprint: database of computational hot spots in protein interfaces

scientific article published on 24 October 2007

Integrating personalized gene expression profiles into predictive disease-associated gene pools

scientific article

Integrating structure to protein-protein interaction networks that drive metastasis to brain and lung in breast cancer

scientific article

NOX5-induced uncoupling of endothelial NO synthase is a causal mechanism and theragnostic target of an age-related hypertension endotype

scientific article published on 10 November 2020

Network-based in silico drug efficacy screening

scientific article

Networks of ProteinProtein Interactions: From Uncertainty to Molecular Details.

scientific article

REPRODUCIBLE DRUG REPURPOSING: WHEN SIMILARITY DOES NOT SUFFICE.

scientific article

Sex and gender differences and biases in artificial intelligence for biomedicine and healthcare

scientific article published on 01 June 2020

The ISCB Student Council Internship Program: Expanding computational biology capacity worldwide.

scientific article published on 18 January 2018

The human hepatocyte TXG-MAPr: gene co-expression network modules to support mechanism-based risk assessment

scientific article published on 09 October 2021

Thrombin stimulates insulin secretion via protease-activated receptor-3

scientific article published on 8 January 2016

Tissue Specificity of Human Disease Module

scientific article published on 17 October 2016

Toward PWAS: discovering pathways associated with human disorders.

scientific article published on 21 November 2011

Understanding Cancer Progression Using Protein Interaction Networks

iFrag: A Protein-Protein Interface Prediction Server Based on Sequence Fragments.

scientific article published on 9 December 2016

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