List of works by Valentina Boeva

Activated ALK signals through the ERK-ETV5-RET pathway to drive neuroblastoma oncogenesis.

scientific article published on 11 January 2018

Analysis of Genomic Sequence Motifs for Deciphering Transcription Factor Binding and Transcriptional Regulation in Eukaryotic Cells

scientific article

Breakpoint features of genomic rearrangements in neuroblastoma with unbalanced translocations and chromothripsis

scientific article

Changes in correlation between promoter methylation and gene expression in cancer

scientific article published on 28 October 2015

Characterization of rearrangements involving the ALK gene reveals a novel truncated form associated with tumor aggressiveness in neuroblastoma

scientific article

Chimeric EWSR1-FLI1 regulates the Ewing sarcoma susceptibility gene EGR2 via a GGAA microsatellite

scientific article

Comparative analyses of super-enhancers reveal conserved elements in vertebrate genomes.

scientific article published on 13 December 2016

Control-FREEC: a tool for assessing copy number and allelic content using next-generation sequencing data

scientific article

Control-free calling of copy number alterations in deep-sequencing data using GC-content normalization

scientific article

Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis

scientific article published on 23 August 2016

De novo motif identification improves the accuracy of predicting transcription factor binding sites in ChIP-Seq data analysis.

scientific article

Deep and wide digging for binding motifs in ChIP-Seq data.

scientific article

HMCan-diff: a method to detect changes in histone modifications in cells with different genetic characteristics

scientific article published on 3 January 2017

HMCan: a method for detecting chromatin modifications in cancer samples using ChIP-seq data.

scientific article

Heterogeneity of neuroblastoma cell identity defined by transcriptional circuitries.

scientific article

Jarid2 Is Implicated in the Initial Xist-Induced Targeting of PRC2 to the Inactive X Chromosome

scientific article published on 01 January 2014

Learning smoothing models of copy number profiles using breakpoint annotations

scientific article

Meta-mining of copy number profiles of high-risk neuroblastoma tumors

scientific article published on 30 October 2018

Multi-factor data normalization enables the detection of copy number aberrations in amplicon sequencing data

scientific article

Nebula--a web-server for advanced ChIP-seq data analysis

scientific article

Ovarian Cancers Harboring Inactivating Mutations in CDK12 Display a Distinct Genomic Instability Pattern Characterized by Large Tandem Duplications.

scientific article published on 19 January 2016

RNF: a general framework to evaluate NGS read mappers ⬇️

scientific article published on 9 September 2015

SV-Bay: structural variant detection in cancer genomes using a Bayesian approach with correction for GC-content and read mappability

scientific article published on 6 January 2016

SVDetect: a tool to identify genomic structural variations from paired-end and mate-pair sequencing data

scientific article

SegAnnDB: interactive Web-based genomic segmentation

scientific article

Spi-1/PU.1 activates transcription through clustered DNA occupancy in erythroleukemia

scientific article

TBX2 is a neuroblastoma core regulatory circuitry component enhancing MYCN/FOXM1 reactivation of DREAM targets

scientific article published in Nature Communications

Targeted therapy of <i>TERT</i>-rearranged neuroblastoma with BET bromodomain inhibitor and proteasome inhibitor combination therapy

scientific article published on 11 December 2020

The oncogenic EWS-FLI1 protein binds in vivo GGAA microsatellite sequences with potential transcriptional activation function

scientific article

[Relationship between micro- and minisatellites in the human genome]

scientific article published on 01 July 2006

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